{"id":"https://openalex.org/W2478970067","doi":"https://doi.org/10.1186/s12859-016-1130-6","title":"RefSelect: a reference sequence selection algorithm for planted (l, d) motif search","display_name":"RefSelect: a reference sequence selection algorithm for planted (l, d) motif search","publication_year":2016,"publication_date":"2016-07-01","ids":{"openalex":"https://openalex.org/W2478970067","doi":"https://doi.org/10.1186/s12859-016-1130-6","mag":"2478970067","pmid":"https://pubmed.ncbi.nlm.nih.gov/27454113"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1130-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1130-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1130-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1130-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100665870","display_name":"Qiang Yu","orcid":"https://orcid.org/0000-0002-8725-6687"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qiang Yu","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, 710071, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, 710071, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072102175","display_name":"Hongwei Huo","orcid":"https://orcid.org/0000-0002-5436-1851"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongwei Huo","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, 710071, China. hwhuo@mail.xidian.edu.cn","School of Computer Science and Technology, Xidian University, Xi'an, 710071, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, 710071, China. hwhuo@mail.xidian.edu.cn","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, 710071, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007433310","display_name":"Ruixing Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruixing Zhao","raw_affiliation_strings":["School of Computer Science and Technology, Xidian University, Xi'an, 710071, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University, Xi'an, 710071, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020544206","display_name":"Da\u2010Zheng Feng","orcid":"https://orcid.org/0000-0002-0168-8340"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dazheng Feng","raw_affiliation_strings":["School of Electronic Engineering, Xidian University, Xi'an, 710071, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronic Engineering, Xidian University, Xi'an, 710071, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003340402","display_name":"Jeffrey Scott Vitter","orcid":"https://orcid.org/0000-0001-7970-6118"},"institutions":[{"id":"https://openalex.org/I368840534","display_name":"University of Mississippi","ror":"https://ror.org/02teq1165","country_code":"US","type":"education","lineage":["https://openalex.org/I368840534","https://openalex.org/I4210141039"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey Scott Vitter","raw_affiliation_strings":["Department of Computer and Information Science, The University of Mississippi, Oxford, MS, 38677-1848, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Science, The University of Mississippi, Oxford, MS, 38677-1848, USA","institution_ids":["https://openalex.org/I368840534"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107809276","display_name":"Jun Huan","orcid":null},"institutions":[{"id":"https://openalex.org/I146416000","display_name":"University of Kansas","ror":"https://ror.org/001tmjg57","country_code":"US","type":"education","lineage":["https://openalex.org/I146416000"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jun Huan","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, the University of Kansas, Lawrence, KS, 66045, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, the University of Kansas, Lawrence, KS, 66045, USA","institution_ids":["https://openalex.org/I146416000"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100665870"],"corresponding_institution_ids":["https://openalex.org/I149594827"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.6963,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.74358753,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"17","issue":"S9","first_page":"266","last_page":"266"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.16279999911785126,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.16279999911785126,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.14259999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.1363999992609024,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6649258136749268},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.6317263245582581},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6090614795684814},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.519511342048645},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5086870789527893},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.4556257724761963},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18165838718414307},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11649495363235474},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.09700807929039001}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6649258136749268},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.6317263245582581},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6090614795684814},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.519511342048645},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5086870789527893},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.4556257724761963},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18165838718414307},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11649495363235474},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.09700807929039001},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-016-1130-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1130-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1130-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27454113","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27454113","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3931787","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4959363","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:kuscholarworks.ku.edu:1808/25596","is_oa":true,"landing_page_url":"http://hdl.handle.net/1808/25596","pdf_url":null,"source":{"id":"https://openalex.org/S4306400421","display_name":"KU ScholarWorks (The University of Kansas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I146416000","host_organization_name":"University of Kansas","host_organization_lineage":["https://openalex.org/I146416000"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1130-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1130-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1130-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2478970067.pdf","grobid_xml":"https://content.openalex.org/works/W2478970067.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W168830697","https://openalex.org/W601739477","https://openalex.org/W1580213736","https://openalex.org/W1583782919","https://openalex.org/W1592870802","https://openalex.org/W1774407693","https://openalex.org/W1783384641","https://openalex.org/W1966354073","https://openalex.org/W1977133097","https://openalex.org/W1985716977","https://openalex.org/W1988888548","https://openalex.org/W1998300401","https://openalex.org/W2018297222","https://openalex.org/W2023863508","https://openalex.org/W2028904582","https://openalex.org/W2038555630","https://openalex.org/W2041306584","https://openalex.org/W2062088872","https://openalex.org/W2065579185","https://openalex.org/W2073661767","https://openalex.org/W2073719763","https://openalex.org/W2074324848","https://openalex.org/W2075277509","https://openalex.org/W2101538917","https://openalex.org/W2110738405","https://openalex.org/W2121391914","https://openalex.org/W2121564430","https://openalex.org/W2141408320","https://openalex.org/W2145091349","https://openalex.org/W2157952888","https://openalex.org/W2163713628","https://openalex.org/W2163923149","https://openalex.org/W2164814636","https://openalex.org/W2221187113","https://openalex.org/W2538120373","https://openalex.org/W4251379442","https://openalex.org/W6675171846"],"related_works":["https://openalex.org/W2058965144","https://openalex.org/W2164382479","https://openalex.org/W2146343568","https://openalex.org/W98480971","https://openalex.org/W2150291671","https://openalex.org/W2013643406","https://openalex.org/W2027972911","https://openalex.org/W2157978810","https://openalex.org/W2597809628","https://openalex.org/W3046370962"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,178],"planted":[2],"(l,":[3,41],"d)":[4,42],"motif":[5],"search":[6],"(PMS)":[7],"is":[8,164,207,222],"an":[9,143],"important":[10],"yet":[11],"challenging":[12],"problem":[13,92,140,188],"in":[14,44,58,75,142],"computational":[15],"biology.":[16],"Pattern-driven":[17],"PMS":[18,125,139,192],"algorithms":[19,136,193],"usually":[20],"use":[21],"k":[22,56],"out":[23],"of":[24,50,107,121,153,203,209,220],"t":[25],"input":[26,46,60],"sequences":[27,30,57,63,212],"as":[28,61],"reference":[29,62,89,112,211],"to":[31,99,155,185],"generate":[32],"candidate":[33,108],"motifs,":[34],"and":[35,68,93,162,206,214],"they":[36,70],"can":[37,115,182],"find":[38],"all":[39],"the":[40,45,54,59,88,105,111,122,134,138,159,187,217],"motifs":[43,109],"sequences.":[47,113,176],"However,":[48],"most":[49],"them":[51,149],"simply":[52],"take":[53],"first":[55],"without":[64],"elaborate":[65],"selection":[66,91],"processes,":[67],"thus":[69],"may":[71],"exhibit":[72],"sharp":[73],"fluctuations":[74],"running":[76],"time,":[77],"especially":[78],"for":[79,110,167,224],"large":[80,168,226],"alphabets.":[81],"RESULTS:":[82],"In":[83],"this":[84],"paper,":[85],"we":[86],"build":[87],"sequence":[90],"propose":[94],"a":[95,117,151,200],"method":[96],"named":[97],"RefSelect":[98,114,131,181,198,221],"quickly":[100],"solve":[101,137,186],"it":[102],"by":[103],"evaluating":[104],"number":[106],"bring":[116],"practical":[118],"time":[119,196],"improvement":[120],"state-of-the-art":[123],"pattern-driven":[124,191],"algorithms.":[126],"Experimental":[127],"results":[128],"show":[129],"that":[130,189],"(1)":[132],"makes":[133,148],"tested":[135],"steadily":[141],"efficient":[144],"way,":[145],"(2)":[146],"particularly,":[147],"achieve":[150],"speedup":[152],"up":[154],"about":[156],"100\u00d7":[157],"on":[158],"protein":[160],"data,":[161],"(3)":[163],"also":[165],"suitable":[166],"data":[169,227],"sets":[170],"which":[171],"contain":[172],"hundreds":[173],"or":[174],"more":[175],"CONCLUSIONS:":[177],"proposed":[179],"algorithm":[180],"be":[183],"used":[184],"many":[190],"present":[194],"execution":[195],"instability.":[197],"requires":[199],"small":[201],"amount":[202],"storage":[204],"space":[205],"capable":[208],"selecting":[210],"efficiently":[213],"effectively.":[215],"Also,":[216],"parallel":[218],"version":[219],"provided":[223],"handling":[225],"sets.":[228]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
