{"id":"https://openalex.org/W2424876691","doi":"https://doi.org/10.1186/s12859-016-1106-6","title":"Gene expression prediction using low-rank matrix completion","display_name":"Gene expression prediction using low-rank matrix completion","publication_year":2016,"publication_date":"2016-06-17","ids":{"openalex":"https://openalex.org/W2424876691","doi":"https://doi.org/10.1186/s12859-016-1106-6","mag":"2424876691","pmid":"https://pubmed.ncbi.nlm.nih.gov/27317252"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1106-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1106-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1106-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1106-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057689846","display_name":"Arnav Kapur","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Arnav Kapur","raw_affiliation_strings":["Biomedical Cybernetics Laboratory, Harvard Medical School, Boston, 02115, MA, USA. arnavkapur@gmail.com","Biomedical Cybernetics Laboratory, Harvard Medical School, Boston, 02115, MA, USA"],"affiliations":[{"raw_affiliation_string":"Biomedical Cybernetics Laboratory, Harvard Medical School, Boston, 02115, MA, USA. arnavkapur@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Biomedical Cybernetics Laboratory, Harvard Medical School, Boston, 02115, MA, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058968994","display_name":"Kshitij Marwah","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kshitij Marwah","raw_affiliation_strings":["Biomedical Cybernetics Laboratory, Harvard Medical School, Boston, 02115, MA, USA"],"affiliations":[{"raw_affiliation_string":"Biomedical Cybernetics Laboratory, Harvard Medical School, Boston, 02115, MA, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076921758","display_name":"Gil Alterovitz","orcid":"https://orcid.org/0000-0002-0495-7059"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gil Alterovitz","raw_affiliation_strings":["Biomedical Cybernetics Laboratory, Harvard Medical School, Boston, 02115, MA, USA","Department of Health Science and Technology, Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, 02139, MA, USA"],"affiliations":[{"raw_affiliation_string":"Biomedical Cybernetics Laboratory, Harvard Medical School, Boston, 02115, MA, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Department of Health Science and Technology, Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, 02139, MA, USA","institution_ids":["https://openalex.org/I63966007"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5057689846"],"corresponding_institution_ids":["https://openalex.org/I136199984"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.0032,"has_fulltext":true,"cited_by_count":47,"citation_normalized_percentile":{"value":0.94001902,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"17","issue":"1","first_page":"243","last_page":"243"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10500","display_name":"Sparse and Compressive Sensing Techniques","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6311463713645935},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5330487489700317},{"id":"https://openalex.org/keywords/matrix-completion","display_name":"Matrix completion","score":0.5311718583106995},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5282220840454102},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4962976574897766},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.47227156162261963},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4423617124557495},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.4286530613899231},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3673090934753418},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3518626391887665},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3444554805755615},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3297063410282135},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.29337388277053833},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.15717348456382751},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09619906544685364},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.09604167938232422},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07714962959289551}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6311463713645935},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5330487489700317},{"id":"https://openalex.org/C2778459887","wikidata":"https://www.wikidata.org/wiki/Q6787865","display_name":"Matrix completion","level":3,"score":0.5311718583106995},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5282220840454102},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4962976574897766},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.47227156162261963},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4423617124557495},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.4286530613899231},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3673090934753418},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3518626391887665},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3444554805755615},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3297063410282135},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.29337388277053833},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.15717348456382751},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09619906544685364},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.09604167938232422},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07714962959289551},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C163716315","wikidata":"https://www.wikidata.org/wiki/Q901177","display_name":"Gaussian","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-016-1106-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1106-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1106-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27317252","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27317252","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:dash.harvard.edu:1/27662123","is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:27662123","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3878092","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4912738","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1106-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1106-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-016-1106-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2424876691.pdf","grobid_xml":"https://content.openalex.org/works/W2424876691.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W33208438","https://openalex.org/W141367381","https://openalex.org/W1019830208","https://openalex.org/W1417555467","https://openalex.org/W1484347389","https://openalex.org/W1511814458","https://openalex.org/W1574433403","https://openalex.org/W1964904043","https://openalex.org/W1970156673","https://openalex.org/W1979882109","https://openalex.org/W1981509058","https://openalex.org/W2010637767","https://openalex.org/W2012909940","https://openalex.org/W2020541351","https://openalex.org/W2025828346","https://openalex.org/W2027330774","https://openalex.org/W2031947549","https://openalex.org/W2045377163","https://openalex.org/W2045586512","https://openalex.org/W2046759180","https://openalex.org/W2048674295","https://openalex.org/W2064749568","https://openalex.org/W2072040767","https://openalex.org/W2080298091","https://openalex.org/W2085124703","https://openalex.org/W2098571225","https://openalex.org/W2098740506","https://openalex.org/W2101290767","https://openalex.org/W2103972604","https://openalex.org/W2112634639","https://openalex.org/W2114933215","https://openalex.org/W2114972221","https://openalex.org/W2115108153","https://openalex.org/W2117553655","https://openalex.org/W2118552280","https://openalex.org/W2119047401","https://openalex.org/W2119967924","https://openalex.org/W2122181892","https://openalex.org/W2125631472","https://openalex.org/W2127906599","https://openalex.org/W2128055045","https://openalex.org/W2129571249","https://openalex.org/W2132400238","https://openalex.org/W2143485490","https://openalex.org/W2145677448","https://openalex.org/W2162171343","https://openalex.org/W2165916500","https://openalex.org/W2166335548","https://openalex.org/W2166913844","https://openalex.org/W2167769381","https://openalex.org/W2167940954","https://openalex.org/W2168980979","https://openalex.org/W2171118759","https://openalex.org/W2181255501","https://openalex.org/W2316243772","https://openalex.org/W2341535507","https://openalex.org/W2408856290","https://openalex.org/W2611328865","https://openalex.org/W2611370172","https://openalex.org/W3138835833","https://openalex.org/W4294365760"],"related_works":["https://openalex.org/W3144354057","https://openalex.org/W4301205717","https://openalex.org/W4288107728","https://openalex.org/W2788210652","https://openalex.org/W2108753466","https://openalex.org/W2972830027","https://openalex.org/W2361403716","https://openalex.org/W2963858139","https://openalex.org/W3213035342","https://openalex.org/W3118793956"],"abstract_inverted_index":{"This":[0],"method":[1,41],"has":[2],"potentially":[3,30],"far-reaching":[4],"applications":[5],"including":[6],"how":[7],"bio-medical":[8],"data":[9,24],"is":[10],"sourced":[11],"and":[12,14],"generated,":[13],"transcriptomic":[15],"prediction":[16],"by":[17],"optimisation.":[18],"We":[19],"show":[20],"that":[21],"gene":[22,35],"expression":[23,36],"can":[25],"be":[26],"computationally":[27],"constructed,":[28],"thereby":[29],"reducing":[31],"the":[32],"costs":[33],"of":[34,45],"profiling.":[37],"In":[38],"conclusion,":[39],"this":[40],"shows":[42],"great":[43],"promise":[44],"opening":[46],"new":[47],"avenues":[48],"in":[49,55],"research":[50],"on":[51],"low-rank":[52],"matrix":[53],"completion":[54],"biological":[56],"sciences.":[57]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
