{"id":"https://openalex.org/W2410618134","doi":"https://doi.org/10.1186/s12859-016-1047-0","title":"Analysis tools for the interplay between genome layout and regulation","display_name":"Analysis tools for the interplay between genome layout and regulation","publication_year":2016,"publication_date":"2016-06-01","ids":{"openalex":"https://openalex.org/W2410618134","doi":"https://doi.org/10.1186/s12859-016-1047-0","mag":"2410618134","pmid":"https://pubmed.ncbi.nlm.nih.gov/27294345"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-1047-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1047-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1047-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1047-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023347965","display_name":"Costas Bouyioukos","orcid":"https://orcid.org/0000-0002-7443-3736"},"institutions":[{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210128926","display_name":"Genopole (France)","ror":"https://ror.org/0380k9k47","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210128926"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Costas Bouyioukos","raw_affiliation_strings":["institute of Systems and Synthetic Biology (iSSB), Genopole, CNRS, Universit\u00e9 d'\u00c9vry Val d'Essonne, \u00c9vry, France","institute of Systems and Synthetic Biology (iSSB), Genopole, CNRS, Universit\u00e9 d\u2019\u00c9vry Val d\u2019Essonne, \u00c9vry, France"],"affiliations":[{"raw_affiliation_string":"institute of Systems and Synthetic Biology (iSSB), Genopole, CNRS, Universit\u00e9 d'\u00c9vry Val d'Essonne, \u00c9vry, France","institution_ids":[]},{"raw_affiliation_string":"institute of Systems and Synthetic Biology (iSSB), Genopole, CNRS, Universit\u00e9 d\u2019\u00c9vry Val d\u2019Essonne, \u00c9vry, France","institution_ids":["https://openalex.org/I4210101231","https://openalex.org/I4210128926","https://openalex.org/I88467170","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091867750","display_name":"Mohamed Elati","orcid":"https://orcid.org/0000-0002-4440-2904"},"institutions":[{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4210101231","display_name":"Institut de Biologie syst\u00e9mique et synth\u00e9tique","ror":"https://ror.org/018r7pa17","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4210096427","https://openalex.org/I4210101231","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210128926","display_name":"Genopole (France)","ror":"https://ror.org/0380k9k47","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210128926"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mohamed Elati","raw_affiliation_strings":["institute of Systems and Synthetic Biology (iSSB), Genopole, CNRS, Universit\u00e9 d'\u00c9vry Val d'Essonne, \u00c9vry, France","institute of Systems and Synthetic Biology (iSSB), Genopole, CNRS, Universit\u00e9 d\u2019\u00c9vry Val d\u2019Essonne, \u00c9vry, France"],"affiliations":[{"raw_affiliation_string":"institute of Systems and Synthetic Biology (iSSB), Genopole, CNRS, Universit\u00e9 d'\u00c9vry Val d'Essonne, \u00c9vry, France","institution_ids":[]},{"raw_affiliation_string":"institute of Systems and Synthetic Biology (iSSB), Genopole, CNRS, Universit\u00e9 d\u2019\u00c9vry Val d\u2019Essonne, \u00c9vry, France","institution_ids":["https://openalex.org/I4210101231","https://openalex.org/I4210128926","https://openalex.org/I88467170","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052082741","display_name":"Fran\u00e7ois K\u00e9p\u00e8s","orcid":"https://orcid.org/0000-0001-5766-4957"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Fran\u00e7ois K\u00e9p\u00e8s","raw_affiliation_strings":["Department of BioEngineering, Imperial College London, London, United Kingdom. francois.kepes@issb.genopole.fr","institute of Systems and Synthetic Biology (iSSB), Genopole, CNRS, Universit\u00e9 d'\u00c9vry Val d'Essonne, \u00c9vry, France. francois.kepes@issb.genopole.fr","Department of BioEngineering, Imperial College London, London, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Department of BioEngineering, Imperial College London, London, United Kingdom. francois.kepes@issb.genopole.fr","institution_ids":[]},{"raw_affiliation_string":"institute of Systems and Synthetic Biology (iSSB), Genopole, CNRS, Universit\u00e9 d'\u00c9vry Val d'Essonne, \u00c9vry, France. francois.kepes@issb.genopole.fr","institution_ids":[]},{"raw_affiliation_string":"Department of BioEngineering, Imperial College London, London, United Kingdom","institution_ids":["https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5052082741"],"corresponding_institution_ids":["https://openalex.org/I47508984"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3387,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.67499684,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"17","issue":"S5","first_page":"191","last_page":"191"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8018993139266968},{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.7025943994522095},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6162810921669006},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.611310601234436},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5150308609008789},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.47634270787239075},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.46133100986480713},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.41763049364089966},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.2859926223754883},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.13509759306907654}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8018993139266968},{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.7025943994522095},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6162810921669006},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.611310601234436},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5150308609008789},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.47634270787239075},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.46133100986480713},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.41763049364089966},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2859926223754883},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.13509759306907654}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-016-1047-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1047-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1047-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:27294345","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27294345","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-01714839v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01714839","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2016, 17 (S5), &#x27E8;10.1186/s12859-016-1047-0&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:3872233","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4905612","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/38490","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/38490","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-1047-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-1047-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-1047-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2410618134.pdf","grobid_xml":"https://content.openalex.org/works/W2410618134.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1673310716","https://openalex.org/W1703533810","https://openalex.org/W1986974894","https://openalex.org/W1990014075","https://openalex.org/W1996283336","https://openalex.org/W1999622475","https://openalex.org/W2011079334","https://openalex.org/W2016160555","https://openalex.org/W2019130407","https://openalex.org/W2025341678","https://openalex.org/W2029266743","https://openalex.org/W2032210760","https://openalex.org/W2037451631","https://openalex.org/W2040544622","https://openalex.org/W2040945279","https://openalex.org/W2042686872","https://openalex.org/W2065577331","https://openalex.org/W2068315875","https://openalex.org/W2073722488","https://openalex.org/W2097396311","https://openalex.org/W2121365413","https://openalex.org/W2128355851","https://openalex.org/W2142017955","https://openalex.org/W2148728220","https://openalex.org/W2150888175","https://openalex.org/W2151456132","https://openalex.org/W2165015714","https://openalex.org/W2167708455","https://openalex.org/W2169507523","https://openalex.org/W2180334400","https://openalex.org/W2482280297","https://openalex.org/W2582743722","https://openalex.org/W2915607458","https://openalex.org/W4244952642"],"related_works":["https://openalex.org/W2131180151","https://openalex.org/W2037172645","https://openalex.org/W4243565069","https://openalex.org/W2336572770","https://openalex.org/W2106726141","https://openalex.org/W2119233950","https://openalex.org/W2063604741","https://openalex.org/W4311179095","https://openalex.org/W4375852817","https://openalex.org/W2991171606"],"abstract_inverted_index":{"We":[0],"demonstrate":[1,32],"the":[2,12,19,23,28,33,49],"capabilities":[3,34],"of":[4,15,22,46],"these":[5],"tools":[6],"by":[7,44],"studying":[8],"on":[9],"one":[10],"hand":[11],"regular":[13],"patterns":[14],"genome":[16],"layout":[17],"in":[18,39],"major":[20],"regulons":[21],"bacterium":[24],"Escherichia":[25],"coli.":[26],"On":[27],"other":[29],"hand,":[30],"we":[31,42],"to":[35],"improve":[36],"TFBS":[37],"prediction":[38],"microbes.":[40],"Finally,":[41],"highlight,":[43],"visualisation":[45],"multivariate":[47],"techniques,":[48],"interplay":[50],"between":[51],"position":[52],"and":[53],"sequence":[54],"information":[55],"for":[56],"effective":[57],"transcription":[58],"regulation.":[59]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-05T09:29:38.588285","created_date":"2025-10-10T00:00:00"}
