{"id":"https://openalex.org/W2295810158","doi":"https://doi.org/10.1186/s12859-016-0978-9","title":"From the desktop to the grid: scalable bioinformatics via workflow conversion","display_name":"From the desktop to the grid: scalable bioinformatics via workflow conversion","publication_year":2016,"publication_date":"2016-03-12","ids":{"openalex":"https://openalex.org/W2295810158","doi":"https://doi.org/10.1186/s12859-016-0978-9","mag":"2295810158","pmid":"https://pubmed.ncbi.nlm.nih.gov/26968893"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-0978-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-0978-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-0978-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-0978-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112047217","display_name":"Luis de la Garza","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Luis de la Garza","raw_affiliation_strings":["Center for Bioinformatics and Dept. of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, 72070, Germany. delagarza@informatik.uni-tuebingen.de","Center for Bioinformatics and Dept. of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, 72070, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Dept. of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, 72070, Germany. delagarza@informatik.uni-tuebingen.de","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"Center for Bioinformatics and Dept. of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, 72070, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111792691","display_name":"J. Veit","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johannes Veit","raw_affiliation_strings":["Center for Bioinformatics and Dept. of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, 72070, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Dept. of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, 72070, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059317639","display_name":"Andr\u00e1s Szolek","orcid":"https://orcid.org/0000-0003-4758-7817"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andras Szolek","raw_affiliation_strings":["Center for Bioinformatics and Dept. of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, 72070, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Dept. of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, 72070, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005703423","display_name":"Marc R\u00f6ttig","orcid":null},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marc R\u00f6ttig","raw_affiliation_strings":["Center for Bioinformatics and Dept. of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, 72070, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Dept. of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, 72070, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090426653","display_name":"Stephan Aiche","orcid":"https://orcid.org/0000-0001-9601-8229"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stephan Aiche","raw_affiliation_strings":["Algorithmic Bioinformatics, Computer Science Institute, Freie Universit\u00e4t Berlin, Takustr. 9, Berlin, 14195, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algorithmic Bioinformatics, Computer Science Institute, Freie Universit\u00e4t Berlin, Takustr. 9, Berlin, 14195, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091197632","display_name":"Sandra Gesing","orcid":"https://orcid.org/0000-0002-6051-0673"},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sandra Gesing","raw_affiliation_strings":["College of Engineering, University of Notre Dame, 257 Fitzpatrick Hall, Notre Dame, 46556, IN, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Engineering, University of Notre Dame, 257 Fitzpatrick Hall, Notre Dame, 46556, IN, United States","institution_ids":["https://openalex.org/I107639228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078948324","display_name":"Knut Reinert","orcid":"https://orcid.org/0000-0003-3078-8129"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Knut Reinert","raw_affiliation_strings":["Algorithmic Bioinformatics, Computer Science Institute, Freie Universit\u00e4t Berlin, Takustr. 9, Berlin, 14195, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algorithmic Bioinformatics, Computer Science Institute, Freie Universit\u00e4t Berlin, Takustr. 9, Berlin, 14195, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053621010","display_name":"Oliver Kohlbacher","orcid":"https://orcid.org/0000-0003-1739-4598"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver Kohlbacher","raw_affiliation_strings":["Center for Bioinformatics and Dept. of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, 72070, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Dept. of Computer Science, University of T\u00fcbingen, Sand 14, T\u00fcbingen, 72070, Germany","institution_ids":["https://openalex.org/I8087733"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5112047217"],"corresponding_institution_ids":["https://openalex.org/I8087733"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1661,"currency":"EUR","value_usd":1791},"fwci":8.5317,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.97062805,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"17","issue":"1","first_page":"127","last_page":"127"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9666000008583069,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9666000008583069,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.011099999770522118,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.004900000058114529,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8248752355575562},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6611052751541138},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6166409850120544},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.49650102853775024},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.48689165711402893},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4552139937877655},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39800307154655457},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.36602458357810974},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.331390380859375},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22841456532478333},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09350204467773438},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06673339009284973}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8248752355575562},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6611052751541138},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6166409850120544},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.49650102853775024},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.48689165711402893},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4552139937877655},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39800307154655457},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.36602458357810974},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.331390380859375},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22841456532478333},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09350204467773438},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06673339009284973},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008838","descriptor_name":"Microcomputers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008838","descriptor_name":"Microcomputers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008838","descriptor_name":"Microcomputers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-016-0978-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-0978-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-0978-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26968893","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26968893","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4788856","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4788856","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:refubium.fu-berlin.de:fub188/16854","is_oa":true,"landing_page_url":"https://refubium.fu-berlin.de/handle/fub188/16854","pdf_url":null,"source":{"id":"https://openalex.org/S4306402444","display_name":"Refubium (Universit\u00e4tsbibliothek der Freien Universit\u00e4t Berlin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I75951250","host_organization_name":"Freie Universit\u00e4t Berlin","host_organization_lineage":["https://openalex.org/I75951250"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Wissenschaftlicher Artikel"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-0978-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-0978-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-0978-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5199999809265137,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321112","display_name":"Eberhard Karls Universit\u00e4t T\u00fcbingen","ror":"https://ror.org/03a1kwz48"},{"id":"https://openalex.org/F4320330124","display_name":"German Network for Bioinformatics Infrastructure","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2295810158.pdf","grobid_xml":"https://content.openalex.org/works/W2295810158.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W34866348","https://openalex.org/W71547456","https://openalex.org/W1510008846","https://openalex.org/W1531160357","https://openalex.org/W1583240815","https://openalex.org/W1974949232","https://openalex.org/W1977812518","https://openalex.org/W1983872876","https://openalex.org/W1987892981","https://openalex.org/W1994188141","https://openalex.org/W2013978322","https://openalex.org/W2020675906","https://openalex.org/W2038733937","https://openalex.org/W2047275456","https://openalex.org/W2052388444","https://openalex.org/W2069450150","https://openalex.org/W2074746251","https://openalex.org/W2075996757","https://openalex.org/W2086689797","https://openalex.org/W2117327695","https://openalex.org/W2119381135","https://openalex.org/W2126297361","https://openalex.org/W2128226234","https://openalex.org/W2128548442","https://openalex.org/W2129466958","https://openalex.org/W2130706354","https://openalex.org/W2140157849","https://openalex.org/W2153606085","https://openalex.org/W2323071858","https://openalex.org/W2913513779","https://openalex.org/W4249665717","https://openalex.org/W6605826122","https://openalex.org/W6717736111"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2010229520"],"abstract_inverted_index":{"BACKGROUND:":[0],"Reproducibility":[1],"is":[2],"one":[3,117],"of":[4,7,19,26,35,42,60,77,85,111,127,141,151,169,173,192,315],"the":[5,8,33,39,57,75,82,96,142,155,186,190,202,217,296,313],"tenets":[6],"scientific":[9,143,156,269,301,317],"method.":[10],"Scientific":[11],"experiments":[12,37],"often":[13],"comprise":[14],"complex":[15,79],"data":[16],"flows,":[17],"selection":[18],"adequate":[20],"parameters,":[21,53,170],"and":[22,24,28,54,100,121,188,216,219,240,251],"analysis":[23],"visualization":[25],"intermediate":[27],"end":[29],"results.":[30,318],"Breaking":[31],"down":[32],"complexity":[34],"such":[36],"into":[38,81],"joint":[40,83],"collaboration":[41],"small,":[43],"repeatable,":[44],"well":[45,50],"defined":[46,51],"tasks,":[47],"each":[48,116],"with":[49,197,229],"inputs,":[52,171],"outputs,":[55],"offers":[56],"immediate":[58],"benefit":[59,67,159],"identifying":[61],"bottlenecks,":[62],"pinpoint":[63],"sections":[64],"which":[65,208],"could":[66,136],"from":[68,160],"parallelization,":[69],"among":[70],"others.":[71],"Workflows":[72],"rest":[73],"upon":[74],"notion":[76],"splitting":[78],"work":[80,260],"effort":[84],"several":[86,91,230],"manageable":[87],"tasks.":[88],"There":[89],"are":[90,131],"engines":[92,130,196],"that":[93,135,153,290],"give":[94],"users":[95],"ability":[97],"to":[98,107,158,227,244,283,299],"design":[99,245],"execute":[101,252],"workflows.":[102],"Each":[103],"engine":[104,207],"was":[105],"created":[106,237],"address":[108],"certain":[109],"problems":[110],"a":[112,149,165,198,212,223,238,248,306],"specific":[113],"community,":[114],"therefore":[115],"has":[118],"its":[119],"advantages":[120],"shortcomings.":[122],"Furthermore,":[123],"not":[124,262,293],"all":[125,128],"features":[126,191],"workflow":[129,161,195,214],"royalty-free":[132,194],"-an":[133],"aspect":[134],"potentially":[137],"drive":[138],"away":[139],"members":[140],"community.":[144],"RESULTS:":[145],"We":[146,163,182,234,287],"have":[147,183,235,305],"developed":[148,164],"set":[150],"tools":[152,175],"enables":[154],"community":[157],"interoperability.":[162],"platform-free":[166],"structured":[167],"representation":[168],"outputs":[172],"command-line":[174],"in":[176],"so-called":[177],"Common":[178],"Tool":[179],"Descriptor":[180],"documents.":[181],"also":[184,272,304],"overcome":[185],"shortcomings":[187],"combined":[189],"two":[193],"substantial":[199],"user":[200],"community:":[201],"Konstanz":[203],"Information":[204],"Miner,":[205],"an":[206],"we":[209],"see":[210],"as":[211],"formidable":[213],"editor,":[215],"Grid":[218],"User":[220],"Support":[221],"Environment,":[222],"web-based":[224],"framework":[225],"able":[226],"interact":[228],"high-performance":[231,255,278],"computing":[232,256,279],"resources.":[233,257],"thus":[236,311],"free":[239],"highly":[241],"accessible":[242,282],"way":[243],"workflows":[246,275],"on":[247,254,267,276,309],"desktop":[249],"computer":[250],"them":[253],"CONCLUSIONS:":[258],"Our":[259],"will":[261],"only":[263,294],"reduce":[264],"time":[265,298],"spent":[266],"designing":[268],"workflows,":[270],"but":[271,303],"make":[273],"executing":[274],"remote":[277],"resources":[280],"more":[281],"technically":[284],"inexperienced":[285],"users.":[286],"strongly":[288],"believe":[289],"our":[291],"efforts":[292],"decrease":[295],"turnaround":[297],"obtain":[300],"results":[302],"positive":[307],"impact":[308],"reproducibility,":[310],"elevating":[312],"quality":[314],"obtained":[316]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
