{"id":"https://openalex.org/W2272037513","doi":"https://doi.org/10.1186/s12859-016-0917-9","title":"Web-TCGA: an online platform for integrated analysis of molecular cancer data sets","display_name":"Web-TCGA: an online platform for integrated analysis of molecular cancer data sets","publication_year":2016,"publication_date":"2016-02-06","ids":{"openalex":"https://openalex.org/W2272037513","doi":"https://doi.org/10.1186/s12859-016-0917-9","mag":"2272037513","pmid":"https://pubmed.ncbi.nlm.nih.gov/26852330"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-0917-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-0917-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-0917-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-0917-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039675166","display_name":"Mario C. Deng","orcid":"https://orcid.org/0000-0002-5202-3816"},"institutions":[{"id":"https://openalex.org/I4210128097","display_name":"Research Center Borstel - Leibniz Lung Center","ror":"https://ror.org/036ragn25","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210128097"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Mario Deng","raw_affiliation_strings":["Leibniz Research Center Borstel, Borstel, Germany. mario.deng@uksh.de","Pathology of the University Hospital of Luebeck and Leibniz Research Center Borstel, Luebeck and Borstel, Germany. mario.deng@uksh.de","Pathology of the University Hospital of Luebeck and Leibniz Research Center Borstel, Luebeck and Borstel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Research Center Borstel, Borstel, Germany. mario.deng@uksh.de","institution_ids":["https://openalex.org/I4210128097"]},{"raw_affiliation_string":"Pathology of the University Hospital of Luebeck and Leibniz Research Center Borstel, Luebeck and Borstel, Germany. mario.deng@uksh.de","institution_ids":["https://openalex.org/I4210128097"]},{"raw_affiliation_string":"Pathology of the University Hospital of Luebeck and Leibniz Research Center Borstel, Luebeck and Borstel, Germany","institution_ids":["https://openalex.org/I4210128097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086985238","display_name":"Johannes Br\u00e4gelmann","orcid":"https://orcid.org/0000-0002-1306-2169"},"institutions":[{"id":"https://openalex.org/I2799391451","display_name":"University Hospital Bonn","ror":"https://ror.org/01xnwqx93","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799391451"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johannes Br\u00e4gelmann","raw_affiliation_strings":["Department of Internal Medicine III Section of Hematology/Oncology, University Hospital of Bonn, Sigmund-Freud-Str. 25, 53127, Bonn, Germany. j.braegelmann@gmx.de","Department of Internal Medicine III Section of Hematology/Oncology, University Hospital of Bonn, Sigmund-Freud-Str. 25, 53127, Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine III Section of Hematology/Oncology, University Hospital of Bonn, Sigmund-Freud-Str. 25, 53127, Bonn, Germany. j.braegelmann@gmx.de","institution_ids":["https://openalex.org/I2799391451"]},{"raw_affiliation_string":"Department of Internal Medicine III Section of Hematology/Oncology, University Hospital of Bonn, Sigmund-Freud-Str. 25, 53127, Bonn, Germany","institution_ids":["https://openalex.org/I2799391451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073445890","display_name":"Joachim L. Schultze","orcid":"https://orcid.org/0000-0003-2812-9853"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Joachim L. Schultze","raw_affiliation_strings":["Genomics and Immunoregulation, LIMES-Institute, University Bonn, Carl-Troll-Stra\u00dfe 31, 53115, Bonn, Germany. j.schultze@uni-bonn.de","Genomics and Immunoregulation, LIMES-Institute, University Bonn, Carl-Troll-Stra\u00dfe 31, 53115, Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics and Immunoregulation, LIMES-Institute, University Bonn, Carl-Troll-Stra\u00dfe 31, 53115, Bonn, Germany. j.schultze@uni-bonn.de","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Genomics and Immunoregulation, LIMES-Institute, University Bonn, Carl-Troll-Stra\u00dfe 31, 53115, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068738028","display_name":"Sven Perner","orcid":"https://orcid.org/0000-0002-0449-8462"},"institutions":[{"id":"https://openalex.org/I4210128097","display_name":"Research Center Borstel - Leibniz Lung Center","ror":"https://ror.org/036ragn25","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210128097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sven Perner","raw_affiliation_strings":["Leibniz Research Center Borstel, Borstel, Germany. sven.perner@uksh.de","Pathology of the University Hospital of Luebeck and Leibniz Research Center Borstel, Luebeck and Borstel, Germany. sven.perner@uksh.de","Leibniz Research Center Borstel, Borstel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Research Center Borstel, Borstel, Germany. sven.perner@uksh.de","institution_ids":["https://openalex.org/I4210128097"]},{"raw_affiliation_string":"Pathology of the University Hospital of Luebeck and Leibniz Research Center Borstel, Luebeck and Borstel, Germany. sven.perner@uksh.de","institution_ids":["https://openalex.org/I4210128097"]},{"raw_affiliation_string":"Leibniz Research Center Borstel, Borstel, Germany","institution_ids":["https://openalex.org/I4210128097"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5039675166"],"corresponding_institution_ids":["https://openalex.org/I4210128097"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":9.4021,"has_fulltext":true,"cited_by_count":215,"citation_normalized_percentile":{"value":0.98367193,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"17","issue":"1","first_page":"72","last_page":"72"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.19740000367164612,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.19740000367164612,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.13590000569820404,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.09709999710321426,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.625533938407898},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.47646093368530273},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35532015562057495},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33745595812797546},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3323986530303955}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.625533938407898},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.47646093368530273},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35532015562057495},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33745595812797546},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3323986530303955}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-016-0917-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-0917-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-0917-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26852330","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26852330","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4744375","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4744375","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-0917-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-0917-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-0917-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.5400000214576721,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2272037513.pdf","grobid_xml":"https://content.openalex.org/works/W2272037513.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1587026990","https://openalex.org/W1999574084","https://openalex.org/W2007347158","https://openalex.org/W2022495797","https://openalex.org/W2048005397","https://openalex.org/W2095463689","https://openalex.org/W2108643617","https://openalex.org/W2114843025","https://openalex.org/W2123830992","https://openalex.org/W2149441684","https://openalex.org/W2157852151","https://openalex.org/W2166186613","https://openalex.org/W4213257593","https://openalex.org/W4230096730"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,190],"Cancer":[2,145],"Genome":[3],"Atlas":[4],"(TCGA)":[5],"is":[6,29,40,150],"a":[7,51,64,131,205],"pool":[8],"of":[9,35,70,92],"molecular":[10,71,100,111,164],"data":[11,73,165],"sets":[12,74,166],"publicly":[13],"accessible":[14,55],"and":[15,37,90,118,127,184,200,211],"freely":[16,54],"available":[17,82,136,167],"to":[18,45,80,97,109,133],"cancer":[19,72,104,201,209],"researchers":[20],"anywhere":[21],"around":[22],"the":[23,169,178],"world.":[24],"However,":[25],"wide":[26],"spread":[27],"use":[28],"limited":[30],"since":[31],"an":[32,152],"advanced":[33],"knowledge":[34],"statistics":[36],"statistical":[38],"software":[39],"required.":[41],"RESULTS:":[42],"In":[43,78,107],"order":[44],"improve":[46],"accessibility":[47],"we":[48],"created":[49],"Web-TCGA,":[50],"web":[52],"based,":[53],"online":[56],"tool,":[57],"which":[58,155],"can":[59,192],"also":[60],"be":[61],"run":[62],"in":[63],"private":[65],"instance,":[66],"for":[67,88,163,180],"integrated":[68],"analysis":[69,89,122,153,207],"provided":[75],"by":[76,123,177],"TCGA.":[77,170],"contrast":[79],"already":[81,135],"tools,":[83,137],"Web-TCGA":[84,113,149],"utilizes":[85],"different":[86,103],"methods":[87],"visualization":[91],"TCGA":[93],"data,":[94],"allowing":[95],"users":[96],"generate":[98],"global":[99,110,206],"profiles":[101],"across":[102],"entities":[105,202,210],"simultaneously.":[106],"addition":[108],"profiles,":[112],"offers":[114],"highly":[115],"detailed":[116],"gene":[117],"tumor":[119],"entity":[120],"centric":[121],"providing":[124],"interactive":[125],"tables":[126],"views.":[128],"CONCLUSIONS:":[129],"As":[130],"supplement":[132],"other":[134],"such":[138],"as":[139],"cBioPortal":[140],"(Sci":[141],"Signal":[142],"6:pl1,":[143],"2013,":[144],"Discov":[146],"2:401-4,":[147],"2012),":[148],"offering":[151],"service,":[154],"does":[156],"not":[157],"require":[158],"any":[159],"installation":[160],"or":[161,203],"configuration,":[162],"at":[168],"Individual":[171],"processing":[172],"requests":[173],"(queries)":[174],"are":[175],"generated":[176],"user":[179,191],"mutation,":[181],"methylation,":[182],"expression":[183],"copy":[185],"number":[186],"variation":[187],"(CNV)":[188],"analyses.":[189],"focus":[193],"analyses":[194],"on":[195],"results":[196],"from":[197],"single":[198],"genes":[199,212],"perform":[204],"(multiple":[208],"simultaneously).":[213]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":36},{"year":2020,"cited_by_count":66},{"year":2019,"cited_by_count":22},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
