{"id":"https://openalex.org/W2273096596","doi":"https://doi.org/10.1186/s12859-016-0903-2","title":"Broadwick: a framework for computational epidemiology","display_name":"Broadwick: a framework for computational epidemiology","publication_year":2016,"publication_date":"2016-02-04","ids":{"openalex":"https://openalex.org/W2273096596","doi":"https://doi.org/10.1186/s12859-016-0903-2","mag":"2273096596","pmid":"https://pubmed.ncbi.nlm.nih.gov/26846686"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-0903-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-0903-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-0903-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-0903-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046830571","display_name":"Anthony O\u2019Hare","orcid":"https://orcid.org/0000-0003-2561-9582"},"institutions":[{"id":"https://openalex.org/I12093191","display_name":"University of Stirling","ror":"https://ror.org/045wgfr59","country_code":"GB","type":"education","lineage":["https://openalex.org/I12093191"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Anthony O\u2019Hare","raw_affiliation_strings":["Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK","School of Natural Sciences, University of Stirling, Stirling, UK"],"raw_orcid":"https://orcid.org/0000-0003-2561-9582","affiliations":[{"raw_affiliation_string":"Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"School of Natural Sciences, University of Stirling, Stirling, UK","institution_ids":["https://openalex.org/I12093191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059869899","display_name":"Samantha Lycett","orcid":"https://orcid.org/0000-0003-3159-596X"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Samantha J. Lycett","raw_affiliation_strings":["Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK. samantha.lycett@ed.ac.uk","The Roslin Institute, University of Edinburgh, Easter Bush, Midlothian. EH25 9RG, UK. samantha.lycett@ed.ac.uk","Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK. samantha.lycett@ed.ac.uk","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"The Roslin Institute, University of Edinburgh, Easter Bush, Midlothian. EH25 9RG, UK. samantha.lycett@ed.ac.uk","institution_ids":["https://openalex.org/I133960621"]},{"raw_affiliation_string":"Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021086501","display_name":"T. Doherty","orcid":"https://orcid.org/0000-0002-4183-5595"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas Doherty","raw_affiliation_strings":["Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK. Tom.doherty@glasgow.ac.uk","Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK. Tom.doherty@glasgow.ac.uk","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076071489","display_name":"Liliana C. M. Salvador","orcid":"https://orcid.org/0000-0001-8472-1179"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Liliana C. M. Salvador","raw_affiliation_strings":["Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK. liliana.salvador@glasgow.ac.uk","Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK. liliana.salvador@glasgow.ac.uk","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004828941","display_name":"Rowland R. Kao","orcid":"https://orcid.org/0000-0003-0919-6401"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rowland R. Kao","raw_affiliation_strings":["Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK. rowland.kao@glasgow.ac.uk","Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK. rowland.kao@glasgow.ac.uk","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Institute of Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow, UK","institution_ids":["https://openalex.org/I7882870"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5046830571"],"corresponding_institution_ids":["https://openalex.org/I12093191","https://openalex.org/I7882870"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":2.6925,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.90051074,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"17","issue":"1","first_page":"65","last_page":"65"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12056","display_name":"Markov Chains and Monte Carlo Methods","score":0.491100013256073,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12056","display_name":"Markov Chains and Monte Carlo Methods","score":0.491100013256073,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.20829999446868896,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11195","display_name":"Simulation Techniques and Applications","score":0.039000000804662704,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5705963373184204},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5324013829231262},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4449811577796936},{"id":"https://openalex.org/keywords/epidemiology","display_name":"Epidemiology","score":0.42255234718322754},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.42163392901420593},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32687026262283325},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32523313164711},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2364259958267212},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1672516167163849},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09527012705802917}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5705963373184204},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5324013829231262},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4449811577796936},{"id":"https://openalex.org/C107130276","wikidata":"https://www.wikidata.org/wiki/Q133805","display_name":"Epidemiology","level":2,"score":0.42255234718322754},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.42163392901420593},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32687026262283325},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32523313164711},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2364259958267212},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1672516167163849},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09527012705802917},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016021","descriptor_name":"Epidemiologic Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016021","descriptor_name":"Epidemiologic Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016021","descriptor_name":"Epidemiologic Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-016-0903-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-0903-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-0903-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26846686","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26846686","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:eprints.gla.ac.uk:114675","is_oa":false,"landing_page_url":"http://eprints.gla.ac.uk/view/author/14253.html>,","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":false,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Articles"},{"id":"pmh:oai:pure.ed.ac.uk:publications/3a70d9a2-4390-4a74-babd-3205161152ef","is_oa":true,"landing_page_url":"http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-0903-2","pdf_url":"http://epicscotland.github.io/broadwick.html","source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"O'Hare, A, Lycett, S, Doherty, T, Monteiro Salvador, L S & Kao, R 2016, 'Broadwick: A Framework for Computational Epidemiology', BMC Bioinformatics. https://doi.org/10.1186/s12859-016-0903-2","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:4743398","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4743398","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:dspace.stir.ac.uk:1893/22844","is_oa":true,"landing_page_url":"http://hdl.handle.net/1893/22844","pdf_url":null,"source":{"id":"https://openalex.org/S4306400268","display_name":"Stirling Online Research Repository (University of Stirling)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I12093191","host_organization_name":"University of Stirling","host_organization_lineage":["https://openalex.org/I12093191"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-0903-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-0903-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-016-0903-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320312695","display_name":"Rural and Environment Science and Analytical Services Division","ror":"https://ror.org/02hrqhj53"},{"id":"https://openalex.org/F4320313269","display_name":"Scottish Government","ror":"https://ror.org/04v2xmd71"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2273096596.pdf","grobid_xml":"https://content.openalex.org/works/W2273096596.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1649645444","https://openalex.org/W1977470776","https://openalex.org/W1984841045","https://openalex.org/W2029758788","https://openalex.org/W2043890595","https://openalex.org/W2045973738","https://openalex.org/W2059041686","https://openalex.org/W2065317389","https://openalex.org/W2072678733","https://openalex.org/W2091264144","https://openalex.org/W2101372412","https://openalex.org/W2105532502","https://openalex.org/W2133979592","https://openalex.org/W2140885215","https://openalex.org/W2149286296","https://openalex.org/W2168532088"],"related_works":["https://openalex.org/W599478544","https://openalex.org/W1576711507","https://openalex.org/W647896512","https://openalex.org/W3121757313","https://openalex.org/W4231462739","https://openalex.org/W562084794","https://openalex.org/W167390939","https://openalex.org/W4385505472","https://openalex.org/W2613570068","https://openalex.org/W188144400"],"abstract_inverted_index":{"BACKGROUND:":[0],"Modelling":[1],"disease":[2,74,203],"outbreaks":[3,16],"often":[4,34],"involves":[5],"integrating":[6],"the":[7,37,80,91,168,207],"wealth":[8],"of":[9,23,39,65,79,170],"data":[10,27,75],"that":[11,56,71,83,114,149],"are":[12,150],"gathered":[13],"during":[14],"modern":[15],"into":[17,28],"complex":[18,41,183],"mathematical":[19],"or":[20],"computational":[21,46],"models":[22,32,70,196],"transmission.":[24],"Incorporating":[25],"these":[26,87],"simple":[29,100],"compartmental":[30],"epidemiological":[31,69,112,118,162,216],"is":[33,143,160],"challenging,":[35],"requiring":[36],"use":[38],"more":[40,44,60],"but":[42],"also":[43],"efficient":[45],"models.":[47,88,184],"In":[48],"this":[49],"paper":[50],"we":[51],"introduce":[52,90],"a":[53,59,99,109,174,202],"new":[54],"framework":[55,92,113,164,176],"allows":[57,194],"for":[58,123,195],"systematic":[61],"and":[62,67,76,120,133,181,205],"user-friendly":[63],"way":[64],"building":[66],"running":[68],"efficiently":[72,115],"handles":[73,116],"reduces":[77],"much":[78],"boilerplate":[81],"code":[82],"usually":[84],"associated":[85],"to":[86,166,179,188,197,201,209],"We":[89,106],"by":[93,153,172],"developing":[94],"an":[95,103,161],"SIR":[96],"model":[97],"on":[98],"network":[101],"as":[102,156,192],"example.":[104],"RESULTS:":[105],"develop":[107,180],"Broadwick,":[108],"modular,":[110],"object-oriented":[111],"large":[117,211],"datasets":[119,212],"provides":[121],"packages":[122],"stochastic":[124],"simulations,":[125],"parameter":[126],"inference":[127],"using":[128],"Approximate":[129],"Bayesian":[130],"Computation":[131],"(ABC)":[132],"Markov":[134],"Chain":[135],"Monte":[136],"Carlo":[137],"(MCMC)":[138],"methods.":[139],"Each":[140],"algorithm":[141],"used":[142],"fully":[144],"customisable":[145],"with":[146,177],"sensible":[147],"defaults":[148],"easily":[151],"overridden":[152],"custom":[154],"algorithms":[155],"required.":[157],"CONCLUSION:":[158],"Broadwick":[159],"modelling":[163],"developed":[165],"increase":[167],"productivity":[169],"researchers":[171],"providing":[173],"common":[175],"which":[178],"share":[182],"It":[185],"will":[186],"appeal":[187],"research":[189],"team":[190],"leaders":[191],"it":[193],"be":[198],"created":[199],"prior":[200],"outbreak":[204],"has":[206],"ability":[208],"handle":[210],"commonly":[213],"found":[214],"in":[215],"modelling.":[217]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1}],"updated_date":"2026-09-05T08:02:43.246662","created_date":"2016-06-24T00:00:00"}
