{"id":"https://openalex.org/W2237287412","doi":"https://doi.org/10.1186/s12859-016-0877-0","title":"Molecular dynamics simulation and bioinformatics study on chloroplast stromal ridge complex from rice (Oryza sativa L.)","display_name":"Molecular dynamics simulation and bioinformatics study on chloroplast stromal ridge complex from rice (Oryza sativa L.)","publication_year":2016,"publication_date":"2016-01-12","ids":{"openalex":"https://openalex.org/W2237287412","doi":"https://doi.org/10.1186/s12859-016-0877-0","mag":"2237287412","pmid":"https://pubmed.ncbi.nlm.nih.gov/26753869"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-016-0877-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-0877-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-016-0877-0.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-016-0877-0.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100695909","display_name":"Yubo Zhang","orcid":"https://orcid.org/0000-0002-7762-0027"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yubo Zhang","raw_affiliation_strings":["State Key Laboratory of Hybrid Rice, Department of Genetics, College of Life Sciences, Wuhan University, Wuhan, 430072, People's Republic of China. zhyubo7@gmail.com","State Key Laboratory of Hybrid Rice, Department of Genetics, College of Life Sciences, Wuhan University, Wuhan, 430072, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Hybrid Rice, Department of Genetics, College of Life Sciences, Wuhan University, Wuhan, 430072, People's Republic of China. zhyubo7@gmail.com","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"State Key Laboratory of Hybrid Rice, Department of Genetics, College of Life Sciences, Wuhan University, Wuhan, 430072, People\u2019s Republic of China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044120877","display_name":"Yi Ding","orcid":"https://orcid.org/0000-0002-9941-411X"},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yi Ding","raw_affiliation_strings":["State Key Laboratory of Hybrid Rice, Department of Genetics, College of Life Sciences, Wuhan University, Wuhan, 430072, People's Republic of China. yiding@whu.edu.cn","State Key Laboratory of Hybrid Rice, Department of Genetics, College of Life Sciences, Wuhan University, Wuhan, 430072, People\u2019s Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Hybrid Rice, Department of Genetics, College of Life Sciences, Wuhan University, Wuhan, 430072, People's Republic of China. yiding@whu.edu.cn","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"State Key Laboratory of Hybrid Rice, Department of Genetics, College of Life Sciences, Wuhan University, Wuhan, 430072, People\u2019s Republic of China","institution_ids":["https://openalex.org/I37461747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5044120877"],"corresponding_institution_ids":["https://openalex.org/I37461747"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.8543,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.75124179,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"17","issue":"1","first_page":"28","last_page":"28"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11177","display_name":"Spectroscopy and Quantum Chemical Studies","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10014","display_name":"Plant Stress Responses and Tolerance","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/oryza-sativa","display_name":"Oryza sativa","score":0.8154600262641907},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.5628303289413452},{"id":"https://openalex.org/keywords/ridge","display_name":"Ridge","score":0.5191351771354675},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4982302188873291},{"id":"https://openalex.org/keywords/chloroplast","display_name":"Chloroplast","score":0.49676281213760376},{"id":"https://openalex.org/keywords/photosynthesis","display_name":"Photosynthesis","score":0.46873363852500916},{"id":"https://openalex.org/keywords/stromal-cell","display_name":"Stromal cell","score":0.4141961634159088},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.39821651577949524},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.39776933193206787},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3365352153778076},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.22632724046707153},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.1248597502708435},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0840313732624054}],"concepts":[{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.8154600262641907},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.5628303289413452},{"id":"https://openalex.org/C32277403","wikidata":"https://www.wikidata.org/wiki/Q740445","display_name":"Ridge","level":2,"score":0.5191351771354675},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4982302188873291},{"id":"https://openalex.org/C69305403","wikidata":"https://www.wikidata.org/wiki/Q47263","display_name":"Chloroplast","level":3,"score":0.49676281213760376},{"id":"https://openalex.org/C183688256","wikidata":"https://www.wikidata.org/wiki/Q11982","display_name":"Photosynthesis","level":2,"score":0.46873363852500916},{"id":"https://openalex.org/C16930146","wikidata":"https://www.wikidata.org/wiki/Q4381253","display_name":"Stromal cell","level":2,"score":0.4141961634159088},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.39821651577949524},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.39776933193206787},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3365352153778076},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.22632724046707153},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.1248597502708435},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0840313732624054},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020836","descriptor_name":"Protein Structure, Quaternary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045322","descriptor_name":"Photosynthetic Reaction Center Complex Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D045322","descriptor_name":"Photosynthetic Reaction Center Complex Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D045322","descriptor_name":"Photosynthetic Reaction Center Complex Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D045322","descriptor_name":"Photosynthetic Reaction Center Complex Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D045322","descriptor_name":"Photosynthetic Reaction Center Complex Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D045322","descriptor_name":"Photosynthetic Reaction Center Complex Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D045322","descriptor_name":"Photosynthetic Reaction Center Complex Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D045322","descriptor_name":"Photosynthetic Reaction Center Complex Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D045322","descriptor_name":"Photosynthetic Reaction Center Complex Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-016-0877-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-0877-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-016-0877-0.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26753869","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26753869","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4709881","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4709881","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-016-0877-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-016-0877-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-016-0877-0.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.5199999809265137}],"awards":[{"id":"https://openalex.org/G1972587944","display_name":null,"funder_award_id":"31471464","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2237287412.pdf","grobid_xml":"https://content.openalex.org/works/W2237287412.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W190738413","https://openalex.org/W1487781539","https://openalex.org/W1885817024","https://openalex.org/W1899503782","https://openalex.org/W1969701328","https://openalex.org/W1969710091","https://openalex.org/W1969753962","https://openalex.org/W1988357838","https://openalex.org/W1988965398","https://openalex.org/W2004803438","https://openalex.org/W2007176314","https://openalex.org/W2015642465","https://openalex.org/W2022647901","https://openalex.org/W2023579018","https://openalex.org/W2029582401","https://openalex.org/W2029667189","https://openalex.org/W2030966943","https://openalex.org/W2034076135","https://openalex.org/W2035266068","https://openalex.org/W2035687084","https://openalex.org/W2041834854","https://openalex.org/W2051381895","https://openalex.org/W2051864856","https://openalex.org/W2052299042","https://openalex.org/W2064747164","https://openalex.org/W2065283382","https://openalex.org/W2073438496","https://openalex.org/W2085561908","https://openalex.org/W2091409101","https://openalex.org/W2097706568","https://openalex.org/W2106695740","https://openalex.org/W2106882534","https://openalex.org/W2111270835","https://openalex.org/W2112743424","https://openalex.org/W2119267663","https://openalex.org/W2123422250","https://openalex.org/W2130479394","https://openalex.org/W2131288855","https://openalex.org/W2132926880","https://openalex.org/W2136763493","https://openalex.org/W2142532813","https://openalex.org/W2145597436","https://openalex.org/W2152207030","https://openalex.org/W2170421654","https://openalex.org/W2171249995","https://openalex.org/W2171268876","https://openalex.org/W2327799631","https://openalex.org/W2582743722","https://openalex.org/W4254275792"],"related_works":["https://openalex.org/W2782056425","https://openalex.org/W2392647464","https://openalex.org/W2019123680","https://openalex.org/W3001535132","https://openalex.org/W221762359","https://openalex.org/W2371241304","https://openalex.org/W2905111173","https://openalex.org/W2163511747","https://openalex.org/W1972698393","https://openalex.org/W1988240546"],"abstract_inverted_index":{"BACKGROUND:":[0],"Rice":[1],"(Oryza":[2],"sativa":[3],"L.)":[4],"is":[5,19,60],"one":[6],"of":[7,32,46,72,130,148,176,230],"the":[8,14,23,51,69,88,123,138,146,163,201,231],"most":[9],"important":[10,36,94],"cereal":[11],"crops":[12],"in":[13,38,58,87,99,167,171,189,205,235],"world":[15],"and":[16,56,74,80,107,117,142,185,195,211,222,228],"its":[17],"yield":[18],"closely":[20],"related":[21],"to":[22,121,136,225],"photosynthesis":[24],"efficiency.":[25],"The":[26],"chloroplast":[27],"stromal":[28,164,202,232],"ridge":[29,165,203,233],"complex":[30,90,166,204,234],"consisting":[31],"PsaC-PsaD-PsaE":[33],"plays":[34],"an":[35],"role":[37],"plant":[39],"photosynthesis,":[40],"which":[41],"has":[42],"been":[43],"a":[44,209],"subject":[45],"many":[47],"studies.":[48],"Till":[49],"now,":[50],"recognition":[52,213,227],"mechanism":[53],"between":[54],"PsaC":[55],"PsaD":[57],"rice":[59,168],"still":[61],"not":[62],"fully":[63],"understood.":[64],"RESULTS:":[65],"Here,":[66],"we":[67,83],"present":[68],"interaction":[70],"features":[71],"OsPsaC":[73],"OsPsaD":[75,131],"by":[76,153],"molecular":[77],"dynamics":[78,223],"simulations":[79],"bioinformatics.":[81],"Firstly,":[82],"identified":[84],"interacting":[85],"residues":[86],"OsPsaC-OsPsaD":[89,124],"during":[91],"simulations.":[92,158],"Significantly,":[93],"hydrogen":[95],"bonds":[96],"were":[97,119],"observed":[98],"residue":[100,139],"pairs":[101,140],"R19-E103,":[102],"D47-K62,":[103],"R53-E63,":[104],"Y81-R20,":[105],"Y81-R61":[106],"L26-V105.":[108],"Free":[109],"energy":[110],"calculations":[111],"suggested":[112,200],"two":[113,154,181],"salt":[114,182],"bridges":[115,183],"R19-E103":[116,141,184],"D47-K62":[118,186],"essential":[120],"maintain":[122],"interaction.":[125],"Supportively,":[126],"electrostatic":[127,133],"potentials":[128,193],"surfaces":[129,194],"exhibited":[132],"attraction":[134],"helped":[135],"stabilize":[137],"D47-K62.":[143],"In":[144],"particular,":[145],"importance":[147],"R19":[149],"was":[150],"further":[151],"verified":[152],"500":[155],"ns":[156],"CG-MD":[157],"Secondly,":[159],"this":[160],"study":[161],"compared":[162],"with":[169],"that":[170],"other":[172,190,206],"organisms.":[173,191],"Notably,":[174],"alignments":[175],"amino":[177],"acids":[178],"showed":[179],"these":[180],"also":[187],"existed":[188],"Electrostatic":[192],"X-ray":[196],"structural":[197],"analysis":[198],"strongly":[199],"organisms":[207],"adopted":[208],"similar":[210],"general":[212],"mechanism.":[214],"CONCLUSIONS:":[215],"These":[216],"results":[217],"together":[218],"provided":[219],"structure":[220],"basis":[221],"behavior":[224],"understand":[226],"assembly":[229],"rice.":[236]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}