{"id":"https://openalex.org/W2239231358","doi":"https://doi.org/10.1186/s12859-015-0871-y","title":"NOBLE \u2013 Flexible concept recognition for large-scale biomedical natural language processing","display_name":"NOBLE \u2013 Flexible concept recognition for large-scale biomedical natural language processing","publication_year":2016,"publication_date":"2016-01-14","ids":{"openalex":"https://openalex.org/W2239231358","doi":"https://doi.org/10.1186/s12859-015-0871-y","mag":"2239231358","pmid":"https://pubmed.ncbi.nlm.nih.gov/26763894"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0871-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0871-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0871-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0871-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012812619","display_name":"Eugene Tseytlin","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Eugene Tseytlin","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA. eugene.tseytlin@gmail.com","Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA. eugene.tseytlin@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082858330","display_name":"Kevin J. Mitchell","orcid":"https://orcid.org/0000-0002-3433-4530"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin Mitchell","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA. mitchellkj@upmc.edu","Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA. mitchellkj@upmc.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033354061","display_name":"Elizabeth Legowski","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elizabeth Legowski","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA. legowski@bsc.gwu.edu","Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA. legowski@bsc.gwu.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039538804","display_name":"Julia Corrigan","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julia Corrigan","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA. juc61@pitt.edu","Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA. juc61@pitt.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017905880","display_name":"Girish Chavan","orcid":null},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Girish Chavan","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA. chavang@upmc.edu","Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA. chavang@upmc.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081418305","display_name":"Rebecca S. Jacobson","orcid":"https://orcid.org/0000-0002-5719-8340"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rebecca S. Jacobson","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA. rebeccaj@pitt.edu","Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA. rebeccaj@pitt.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh School of Medicine, The Offices at Baum, 5607 Baum Boulevard, BAUM 423, Rm 523, Pittsburgh, PA, 15206-3701, USA","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5012812619"],"corresponding_institution_ids":["https://openalex.org/I170201317"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":12.8816,"has_fulltext":true,"cited_by_count":112,"citation_normalized_percentile":{"value":0.99035111,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"17","issue":"1","first_page":"32","last_page":"32"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.004900000058114529,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.002199999988079071,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5825079679489136},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.5751054286956787},{"id":"https://openalex.org/keywords/natural","display_name":"Natural (archaeology)","score":0.5376027822494507},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.43391963839530945},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3793730139732361},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36654147505760193},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3289320468902588},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22668984532356262},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.07985261082649231},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.07747182250022888}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5825079679489136},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.5751054286956787},{"id":"https://openalex.org/C2776608160","wikidata":"https://www.wikidata.org/wiki/Q4785462","display_name":"Natural (archaeology)","level":2,"score":0.5376027822494507},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.43391963839530945},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3793730139732361},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36654147505760193},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3289320468902588},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22668984532356262},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.07985261082649231},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.07747182250022888},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-015-0871-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0871-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0871-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26763894","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26763894","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:d-scholarship.pitt.edu:28913","is_oa":false,"landing_page_url":"https://d-scholarship.pitt.edu/28913/7/licence.txt","pdf_url":null,"source":{"id":"https://openalex.org/S4306402372","display_name":"D-Scholarship@Pitt (University of Pittsburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170201317","host_organization_name":"University of Pittsburgh","host_organization_lineage":["https://openalex.org/I170201317"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:4712516","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4712516","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0871-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0871-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0871-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3647296050","display_name":null,"funder_award_id":"R01 CA132672","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G3767252406","display_name":null,"funder_award_id":"U24 CA180921","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2239231358.pdf","grobid_xml":"https://content.openalex.org/works/W2239231358.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W70882719","https://openalex.org/W102787101","https://openalex.org/W106842490","https://openalex.org/W158143483","https://openalex.org/W161474860","https://openalex.org/W178134144","https://openalex.org/W1503670983","https://openalex.org/W1532325895","https://openalex.org/W1550258693","https://openalex.org/W1594995996","https://openalex.org/W1848780829","https://openalex.org/W1871067837","https://openalex.org/W2011628373","https://openalex.org/W2014849717","https://openalex.org/W2014959658","https://openalex.org/W2037625543","https://openalex.org/W2040298461","https://openalex.org/W2052525903","https://openalex.org/W2058490165","https://openalex.org/W2074640468","https://openalex.org/W2076624488","https://openalex.org/W2082673056","https://openalex.org/W2089697781","https://openalex.org/W2104655020","https://openalex.org/W2106797966","https://openalex.org/W2109005707","https://openalex.org/W2110978709","https://openalex.org/W2117479478","https://openalex.org/W2122402213","https://openalex.org/W2127008962","https://openalex.org/W2137079713","https://openalex.org/W2143902665","https://openalex.org/W2146089916","https://openalex.org/W2153393891","https://openalex.org/W2159151673","https://openalex.org/W2169818249","https://openalex.org/W2899495106","https://openalex.org/W4213009331","https://openalex.org/W4213016248","https://openalex.org/W6604181502","https://openalex.org/W6607259837","https://openalex.org/W6733168127"],"related_works":["https://openalex.org/W4283262748","https://openalex.org/W2415545834","https://openalex.org/W2069695727","https://openalex.org/W2150084125","https://openalex.org/W1802639773","https://openalex.org/W2118505788","https://openalex.org/W2502773048","https://openalex.org/W4252362398","https://openalex.org/W1972196578","https://openalex.org/W1490878237"],"abstract_inverted_index":{"BACKGROUND:":[0],"Natural":[1],"language":[2],"processing":[3],"(NLP)":[4],"applications":[5],"are":[6],"increasingly":[7],"important":[8,22],"in":[9,91,214,231,268],"biomedical":[10,269],"data":[11],"analysis,":[12],"knowledge":[13],"engineering,":[14],"and":[15,28,40,48,52,63,111,121,129,135,147,163,173,235,250,255],"decision":[16],"support.":[17],"Concept":[18,141],"recognition":[19,43,229,267],"is":[20,106,222],"an":[21,78],"component":[23,44],"task":[24],"for":[25,45,72,98,264],"NLP":[26,46,102,270],"pipelines,":[27,47],"can":[29,86],"be":[30,87],"either":[31],"general-purpose":[32,41],"or":[33,90,116],"domain-specific.":[34],"We":[35,118,154],"describe":[36,155],"a":[37,61,69,99,259],"novel,":[38],"flexible,":[39],"concept":[42,228,266],"compare":[49],"its":[50,167,242],"speed":[51,120],"accuracy":[53,122,234],"against":[54,126],"five":[55],"commonly":[56,198],"used":[57,199,227],"alternatives":[58],"on":[59],"both":[60],"biological":[62],"clinical":[64],"corpus.":[65],"NOBLE":[66,160,220,239,257],"Coder":[67,161,221,240],"implements":[68],"general":[70,265],"algorithm":[71],"matching":[73,84,171,261],"terms":[74,232],"to":[75,93,138,224,252],"concepts":[76],"from":[77],"arbitrary":[79],"vocabulary":[80],"set.":[81],"The":[82,104],"system's":[83],"options":[85],"configured":[88],"individually":[89],"combination":[92],"yield":[94],"specific":[95],"system":[96,125,162,262],"behavior":[97],"variety":[100],"of":[101,123,158,233,238,248],"tasks.":[103,256],"software":[105],"open":[107],"source,":[108],"freely":[109],"available,":[110],"easily":[112],"integrated":[113],"into":[114],"UIMA":[115],"GATE.":[117],"benchmarked":[119],"the":[124,127,159,206],"CRAFT":[128],"ShARe":[130],"corpora":[131],"as":[132,203,205],"reference":[133],"standards":[134],"compared":[136,184],"it":[137],"MMTx,":[139],"MGrep,":[140],"Mapper,":[142],"cTAKES":[143,148],"Dictionary":[144,150],"Lookup":[145,151],"Annotator,":[146],"Fast":[149],"Annotator.":[152],"RESULTS:":[153],"key":[156],"advantages":[157],"associated":[164],"tools,":[165],"including":[166,188],"greedy":[168],"algorithm,":[169],"configurable":[170],"strategies,":[172],"multiple":[174],"terminology":[175,244],"input":[176],"formats.":[177],"These":[178],"features":[179],"provide":[180],"unique":[181],"functionality":[182],"when":[183],"with":[185],"existing":[186],"alternatives,":[187,200],"state-of-the-art":[189],"systems.":[190,209,218],"On":[191],"two":[192],"benchmarking":[193],"tasks,":[194],"NOBLE's":[195],"performance":[196],"exceeded":[197],"performing":[201],"almost":[202],"well":[204],"most":[207],"advanced":[208],"Error":[210],"analysis":[211],"revealed":[212],"differences":[213],"error":[215],"profiles":[216],"among":[217],"CONCLUSION:":[219],"comparable":[223],"other":[225],"widely":[226],"systems":[230],"speed.":[236],"Advantages":[237],"include":[241],"interactive":[243],"builder":[245],"tool,":[246],"ease":[247],"configuration,":[249],"adaptability":[251],"various":[253],"domains":[254],"provides":[258],"term-to-concept":[260],"suitable":[263],"pipelines.":[271]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":14},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":23},{"year":2017,"cited_by_count":29},{"year":2016,"cited_by_count":6}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
