{"id":"https://openalex.org/W2189046024","doi":"https://doi.org/10.1186/s12859-015-0831-6","title":"Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies","display_name":"Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies","publication_year":2015,"publication_date":"2015-12-01","ids":{"openalex":"https://openalex.org/W2189046024","doi":"https://doi.org/10.1186/s12859-015-0831-6","mag":"2189046024","pmid":"https://pubmed.ncbi.nlm.nih.gov/26627175"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0831-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0831-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0831-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0831-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037383891","display_name":"Tahsin Kur\u00e7","orcid":"https://orcid.org/0000-0001-9237-4306"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tahsin Kurc","raw_affiliation_strings":["Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA. tahsin.kurc@stonybrook.edu","Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA. tahsin.kurc@stonybrook.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077619274","display_name":"Xin Qi","orcid":"https://orcid.org/0000-0003-4588-1238"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I2802203029","display_name":"Johnson University","ror":"https://ror.org/04dpnfr42","country_code":"US","type":"education","lineage":["https://openalex.org/I2802203029"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xin Qi","raw_affiliation_strings":["Department of Pathology & Laboratory Medicine, Rutgers -- Robert Wood Johnson Medical School, New Brunswick, USA. qixi@rutgers.edu","Rutgers Cancer Institute of New Jersey, New Brunswick, USA. qixi@rutgers.edu","Department of Pathology & Laboratory Medicine, Rutgers -- Robert Wood Johnson Medical School, New Brunswick, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology & Laboratory Medicine, Rutgers -- Robert Wood Johnson Medical School, New Brunswick, USA. qixi@rutgers.edu","institution_ids":[]},{"raw_affiliation_string":"Rutgers Cancer Institute of New Jersey, New Brunswick, USA. qixi@rutgers.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Pathology & Laboratory Medicine, Rutgers -- Robert Wood Johnson Medical School, New Brunswick, USA","institution_ids":["https://openalex.org/I2802203029","https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065936067","display_name":"Daihou Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daihou Wang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Rutgers University, New Brunswick, USA. daihou.wang@rutgers.edu","Department of Electrical and Computer Engineering, Rutgers University, New Brunswick, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Rutgers University, New Brunswick, USA. daihou.wang@rutgers.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Rutgers University, New Brunswick, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100704639","display_name":"Fusheng Wang","orcid":"https://orcid.org/0000-0002-9369-9361"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fusheng Wang","raw_affiliation_strings":["Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA. fusheng.wang@stonybrook.edu","Department of Computer Science, Stony Brook University, Stony Brook, USA. fusheng.wang@stonybrook.edu","Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA. fusheng.wang@stonybrook.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, Stony Brook University, Stony Brook, USA. fusheng.wang@stonybrook.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076465098","display_name":"George Teodoro","orcid":"https://orcid.org/0000-0001-6289-3914"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George Teodoro","raw_affiliation_strings":["Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA. teodoro@unb.br","Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil. teodoro@unb.br","Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA. teodoro@unb.br","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, University of Brasilia, Bras\u00edlia, Brazil. teodoro@unb.br","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034820084","display_name":"Lee Cooper","orcid":"https://orcid.org/0000-0002-3504-4965"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lee Cooper","raw_affiliation_strings":["Department of Biomedical Informatics, Emory University, Atlanta, USA. lee.cooper@emory.edu","Department of Biomedical Informatics, Emory University, Atlanta, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Emory University, Atlanta, USA. lee.cooper@emory.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Informatics, Emory University, Atlanta, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018258568","display_name":"Michael Nalisnik","orcid":null},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Nalisnik","raw_affiliation_strings":["Department of Biomedical Informatics, Emory University, Atlanta, USA. mnalisn@emory.edu","Department of Biomedical Informatics, Emory University, Atlanta, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Emory University, Atlanta, USA. mnalisn@emory.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Informatics, Emory University, Atlanta, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101725247","display_name":"Lin Yang","orcid":"https://orcid.org/0000-0002-7615-209X"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lin Yang","raw_affiliation_strings":["Department of Biomedical Engineering, University of Florida, Gainesville, USA. lin.yang@bme.ufl.edu","Department of Biomedical Engineering, University of Florida, Gainesville, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of Florida, Gainesville, USA. lin.yang@bme.ufl.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Engineering, University of Florida, Gainesville, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072946826","display_name":"Joel Saltz","orcid":"https://orcid.org/0000-0002-3451-2165"},"institutions":[{"id":"https://openalex.org/I59553526","display_name":"Stony Brook University","ror":"https://ror.org/05qghxh33","country_code":"US","type":"education","lineage":["https://openalex.org/I59553526"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel Saltz","raw_affiliation_strings":["Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA. joel.saltz@stonybrookmedicine.edu","Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA. joel.saltz@stonybrookmedicine.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Informatics, Stony Brook University, Stony Brook, USA","institution_ids":["https://openalex.org/I59553526"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089373018","display_name":"David J. Foran","orcid":"https://orcid.org/0000-0002-0090-0055"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I2802203029","display_name":"Johnson University","ror":"https://ror.org/04dpnfr42","country_code":"US","type":"education","lineage":["https://openalex.org/I2802203029"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David J. Foran","raw_affiliation_strings":["Department of Pathology & Laboratory Medicine, Rutgers -- Robert Wood Johnson Medical School, New Brunswick, USA. foran@cinj.rutgers.edu","Rutgers Cancer Institute of New Jersey, New Brunswick, USA. foran@cinj.rutgers.edu","Department of Pathology & Laboratory Medicine, Rutgers -- Robert Wood Johnson Medical School, New Brunswick, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology & Laboratory Medicine, Rutgers -- Robert Wood Johnson Medical School, New Brunswick, USA. foran@cinj.rutgers.edu","institution_ids":[]},{"raw_affiliation_string":"Rutgers Cancer Institute of New Jersey, New Brunswick, USA. foran@cinj.rutgers.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Pathology & Laboratory Medicine, Rutgers -- Robert Wood Johnson Medical School, New Brunswick, USA","institution_ids":["https://openalex.org/I2802203029","https://openalex.org/I102322142"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5037383891"],"corresponding_institution_ids":["https://openalex.org/I59553526"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":7.1218,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.97017916,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"16","issue":"1","first_page":"399","last_page":"399"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6865605115890503},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.6429858803749084},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6387065649032593},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.42617326974868774},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42334163188934326},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36058491468429565},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18505814671516418},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18104776740074158}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6865605115890503},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.6429858803749084},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6387065649032593},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.42617326974868774},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42334163188934326},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36058491468429565},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18505814671516418},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18104776740074158}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003952","descriptor_name":"Diagnostic Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D046888","descriptor_name":"Tissue Array Analysis","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D060787","descriptor_name":"Neoplasm Grading","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060787","descriptor_name":"Neoplasm Grading","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060787","descriptor_name":"Neoplasm Grading","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060787","descriptor_name":"Neoplasm Grading","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060787","descriptor_name":"Neoplasm Grading","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-015-0831-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0831-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0831-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26627175","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26627175","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3643514","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4667532","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0831-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0831-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0831-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G120275728","display_name":null,"funder_award_id":"Univer","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G2226093133","display_name":null,"funder_award_id":"ARRA-NSF-OCI-0906324","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3017721840","display_name":null,"funder_award_id":"R01LM009239","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G328536870","display_name":null,"funder_award_id":"0910735","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3694745470","display_name":null,"funder_award_id":"U24CA180924","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4836393554","display_name":null,"funder_award_id":"5R01LM011119-05","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5079005330","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5262810016","display_name":null,"funder_award_id":"HHSN261200800001E","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5364734556","display_name":null,"funder_award_id":"5R01LM009239-07","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5756171758","display_name":null,"funder_award_id":"HSN261200800001E","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5903005999","display_name":"NICS Remote Data Analysis and Visualization Center","funder_award_id":"0906324","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G590387015","display_name":"Collaborative Research: SHF: Small: Optimization of Memory Architectures: A Foundation Approach","funder_award_id":"2008000","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5918407747","display_name":null,"funder_award_id":"OCI-0906324","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6211647149","display_name":null,"funder_award_id":"HHSN261200800001","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7616262001","display_name":null,"funder_award_id":"U24CA18092","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7743313774","display_name":null,"funder_award_id":"1U24CA180924-01A1","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7780655954","display_name":"High-Resolution 3D Topology Optimization via Multi-Density Higher-Order Elements","funder_award_id":"1200800","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7836354676","display_name":null,"funder_award_id":"HHSN261200800","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8559299860","display_name":null,"funder_award_id":"5R01LM009239-07","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8576547492","display_name":null,"funder_award_id":"OCI-0910735","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8747812308","display_name":null,"funder_award_id":"00001","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309321","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2189046024.pdf","grobid_xml":"https://content.openalex.org/works/W2189046024.grobid-xml"},"referenced_works_count":117,"referenced_works":["https://openalex.org/W48206859","https://openalex.org/W60613460","https://openalex.org/W190927549","https://openalex.org/W191657459","https://openalex.org/W202643521","https://openalex.org/W1489608363","https://openalex.org/W1503812425","https://openalex.org/W1508935397","https://openalex.org/W1548779692","https://openalex.org/W1595858686","https://openalex.org/W1606996132","https://openalex.org/W1701711878","https://openalex.org/W1807639988","https://openalex.org/W1835259194","https://openalex.org/W1852780412","https://openalex.org/W1940737455","https://openalex.org/W1964929775","https://openalex.org/W1966178787","https://openalex.org/W1966899997","https://openalex.org/W1969617278","https://openalex.org/W1970480709","https://openalex.org/W1980531127","https://openalex.org/W1989792006","https://openalex.org/W1993456074","https://openalex.org/W2005816532","https://openalex.org/W2008198608","https://openalex.org/W2008297189","https://openalex.org/W2012617126","https://openalex.org/W2017237394","https://openalex.org/W2020223838","https://openalex.org/W2022024220","https://openalex.org/W2025065484","https://openalex.org/W2029075222","https://openalex.org/W2030700013","https://openalex.org/W2032039029","https://openalex.org/W2032613563","https://openalex.org/W2035731741","https://openalex.org/W2036987424","https://openalex.org/W2039310800","https://openalex.org/W2044213522","https://openalex.org/W2053803547","https://openalex.org/W2061975088","https://openalex.org/W2063186542","https://openalex.org/W2065392434","https://openalex.org/W2066032745","https://openalex.org/W2067073345","https://openalex.org/W2071319114","https://openalex.org/W2073423882","https://openalex.org/W2077284797","https://openalex.org/W2080743883","https://openalex.org/W2081454449","https://openalex.org/W2087121965","https://openalex.org/W2088658319","https://openalex.org/W2091503252","https://openalex.org/W2093256954","https://openalex.org/W2096313499","https://openalex.org/W2096994408","https://openalex.org/W2098371241","https://openalex.org/W2106918289","https://openalex.org/W2109426995","https://openalex.org/W2109868644","https://openalex.org/W2112340065","https://openalex.org/W2113180829","https://openalex.org/W2113364578","https://openalex.org/W2113933145","https://openalex.org/W2117815663","https://openalex.org/W2121508706","https://openalex.org/W2121893797","https://openalex.org/W2122769974","https://openalex.org/W2123602037","https://openalex.org/W2124752499","https://openalex.org/W2130389633","https://openalex.org/W2130446944","https://openalex.org/W2130660124","https://openalex.org/W2132201434","https://openalex.org/W2132204530","https://openalex.org/W2134044542","https://openalex.org/W2135098204","https://openalex.org/W2137086253","https://openalex.org/W2137190664","https://openalex.org/W2138776109","https://openalex.org/W2139484679","https://openalex.org/W2144407188","https://openalex.org/W2144679084","https://openalex.org/W2145494871","https://openalex.org/W2146492971","https://openalex.org/W2146606012","https://openalex.org/W2148615153","https://openalex.org/W2149995688","https://openalex.org/W2150476673","https://openalex.org/W2150593711","https://openalex.org/W2152478904","https://openalex.org/W2154429766","https://openalex.org/W2157640836","https://openalex.org/W2157840858","https://openalex.org/W2159132424","https://openalex.org/W2160066518","https://openalex.org/W2162322364","https://openalex.org/W2168183040","https://openalex.org/W2170634604","https://openalex.org/W2171941690","https://openalex.org/W2183593162","https://openalex.org/W2246690291","https://openalex.org/W2341163870","https://openalex.org/W2433053226","https://openalex.org/W2913066018","https://openalex.org/W2914861687","https://openalex.org/W3013976982","https://openalex.org/W3083695210","https://openalex.org/W4234552385","https://openalex.org/W4235762625","https://openalex.org/W4237418714","https://openalex.org/W4240107290","https://openalex.org/W4246298021","https://openalex.org/W4252521233","https://openalex.org/W4256084543","https://openalex.org/W4302395443"],"related_works":["https://openalex.org/W4322629366","https://openalex.org/W2808989540","https://openalex.org/W2397053934","https://openalex.org/W1039292361","https://openalex.org/W2551093110","https://openalex.org/W2148016376","https://openalex.org/W4237919137","https://openalex.org/W3184179822","https://openalex.org/W3095362084","https://openalex.org/W3003361536"],"abstract_inverted_index":{"Our":[0],"work":[1],"demonstrates":[2],"efficient":[3,14],"CBIR":[4],"algorithms":[5],"and":[6,34],"high":[7],"performance":[8],"computing":[9],"can":[10],"be":[11],"leveraged":[12],"for":[13],"analysis":[15],"of":[16,24,42],"large":[17],"microscopy":[18,50],"images":[19],"to":[20,37],"meet":[21],"the":[22,43],"challenges":[23],"clinically":[25],"salient":[26],"applications":[27],"in":[28],"pathology.":[29],"These":[30],"technologies":[31],"enable":[32],"researchers":[33],"clinical":[35],"investigators":[36],"make":[38],"more":[39],"effective":[40],"use":[41],"rich":[44],"informational":[45],"content":[46],"contained":[47],"within":[48],"digitized":[49],"specimens.":[51]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":7}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
