{"id":"https://openalex.org/W2173935179","doi":"https://doi.org/10.1186/s12859-015-0818-3","title":"misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads","display_name":"misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads","publication_year":2015,"publication_date":"2015-11-16","ids":{"openalex":"https://openalex.org/W2173935179","doi":"https://doi.org/10.1186/s12859-015-0818-3","mag":"2173935179","pmid":"https://pubmed.ncbi.nlm.nih.gov/26573684"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0818-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0818-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0818-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0818-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101966849","display_name":"Xiao Zhu","orcid":"https://orcid.org/0000-0001-9339-0033"},"institutions":[{"id":"https://openalex.org/I134052481","display_name":"Harbin Normal University","ror":"https://ror.org/0270y6950","country_code":"CN","type":"education","lineage":["https://openalex.org/I134052481"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiao Zhu","raw_affiliation_strings":["Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China. zhuxiao.hit@gmail.com","College of Computer Sciences and Information Engineering, Harbin Normal University, Harbin, Heilongjiang, China. zhuxiao.hit@gmail.com","College of Computer Sciences and Information Engineering, Harbin Normal University, Harbin, Heilongjiang, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China. zhuxiao.hit@gmail.com","institution_ids":[]},{"raw_affiliation_string":"College of Computer Sciences and Information Engineering, Harbin Normal University, Harbin, Heilongjiang, China. zhuxiao.hit@gmail.com","institution_ids":[]},{"raw_affiliation_string":"College of Computer Sciences and Information Engineering, Harbin Normal University, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I134052481"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103578758","display_name":"Henry C. M. Leung","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Henry C. M. Leung","raw_affiliation_strings":["Department of Computer Science, University of Hong Kong, Pokfulam Road, Hong Kong, China. cmleung2@cs.hku.hk","Department of Computer Science, University of Hong Kong, Pokfulam Road, Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Hong Kong, Pokfulam Road, Hong Kong, China. cmleung2@cs.hku.hk","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, University of Hong Kong, Pokfulam Road, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102004676","display_name":"Rongjie Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rongjie Wang","raw_affiliation_strings":["Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China. rjwang.hit@gmail.com","Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China. rjwang.hit@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112411983","display_name":"Francis Y. L. Chin","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Francis Y. L. Chin","raw_affiliation_strings":["Department of Computer Science, University of Hong Kong, Pokfulam Road, Hong Kong, China. chin@cs.hku.hk","Department of Computer Science, University of Hong Kong, Pokfulam Road, Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Hong Kong, Pokfulam Road, Hong Kong, China. chin@cs.hku.hk","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, University of Hong Kong, Pokfulam Road, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025130883","display_name":"Siu Ming Yiu","orcid":"https://orcid.org/0000-0002-3975-8500"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Siu Ming Yiu","raw_affiliation_strings":["Department of Computer Science, University of Hong Kong, Pokfulam Road, Hong Kong, China. smyiu@cs.hku.hk","Department of Computer Science, University of Hong Kong, Pokfulam Road, Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Hong Kong, Pokfulam Road, Hong Kong, China. smyiu@cs.hku.hk","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, University of Hong Kong, Pokfulam Road, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109302852","display_name":"Guangri Quan","orcid":null},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangri Quan","raw_affiliation_strings":["Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China. grquan@hit.edu.cn","Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China. grquan@hit.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100700738","display_name":"Yajie Li","orcid":"https://orcid.org/0000-0003-4800-5006"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I4210122309","display_name":"Fourth Affiliated Hospital of Harbin Medical University","ror":"https://ror.org/02s7c9e98","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210122309"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yajie Li","raw_affiliation_strings":["The Fourth Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China. 148077246@qq.com","The Fourth Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China"],"affiliations":[{"raw_affiliation_string":"The Fourth Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China. 148077246@qq.com","institution_ids":[]},{"raw_affiliation_string":"The Fourth Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210122309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100675481","display_name":"Rui Zhang","orcid":"https://orcid.org/0000-0001-9000-5021"},"institutions":[{"id":"https://openalex.org/I4210122309","display_name":"Fourth Affiliated Hospital of Harbin Medical University","ror":"https://ror.org/02s7c9e98","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210122309"]},{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui Zhang","raw_affiliation_strings":["The Fourth Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China. 282661708@qq.com","The Fourth Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China"],"affiliations":[{"raw_affiliation_string":"The Fourth Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China. 282661708@qq.com","institution_ids":[]},{"raw_affiliation_string":"The Fourth Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210122309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038875139","display_name":"Qinghua Jiang","orcid":"https://orcid.org/0000-0002-1827-0389"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qinghua Jiang","raw_affiliation_strings":["School of Life Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China. qhjiang@hit.edu.cn","School of Life Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China"],"affiliations":[{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China. qhjiang@hit.edu.cn","institution_ids":[]},{"raw_affiliation_string":"School of Life Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100461657","display_name":"Bo Liu","orcid":"https://orcid.org/0000-0002-4414-4001"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Liu","raw_affiliation_strings":["Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China. bo.liu@hit.edu.cn","Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China. bo.liu@hit.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062768118","display_name":"Yucui Dong","orcid":"https://orcid.org/0000-0001-5261-4125"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yucui Dong","raw_affiliation_strings":["Department of Immunology, Harbin Medical University, Harbin, Heilongjiang, China. dongyucui521@yeah.net","Department of Immunology, Harbin Medical University, Harbin, Heilongjiang, China"],"affiliations":[{"raw_affiliation_string":"Department of Immunology, Harbin Medical University, Harbin, Heilongjiang, China. dongyucui521@yeah.net","institution_ids":[]},{"raw_affiliation_string":"Department of Immunology, Harbin Medical University, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019994383","display_name":"Guohui Zhou","orcid":"https://orcid.org/0000-0002-4500-1002"},"institutions":[{"id":"https://openalex.org/I134052481","display_name":"Harbin Normal University","ror":"https://ror.org/0270y6950","country_code":"CN","type":"education","lineage":["https://openalex.org/I134052481"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guohui Zhou","raw_affiliation_strings":["College of Computer Sciences and Information Engineering, Harbin Normal University, Harbin, Heilongjiang, China. zhou_ghui@163.com","College of Computer Sciences and Information Engineering, Harbin Normal University, Harbin, Heilongjiang, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Sciences and Information Engineering, Harbin Normal University, Harbin, Heilongjiang, China. zhou_ghui@163.com","institution_ids":[]},{"raw_affiliation_string":"College of Computer Sciences and Information Engineering, Harbin Normal University, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I134052481"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100392447","display_name":"Yadong Wang","orcid":"https://orcid.org/0000-0001-6500-6217"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yadong Wang","raw_affiliation_strings":["Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China. ydwang@hit.edu.cn","Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China. ydwang@hit.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Center for Bioinformatics, School of Computer Sciences and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5101966849"],"corresponding_institution_ids":["https://openalex.org/I134052481"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7546,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.72431359,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"16","issue":"1","first_page":"386","last_page":"386"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11470","display_name":"Legume Nitrogen Fixing Symbiosis","score":0.9467999935150146,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.7892165184020996},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.6946939826011658},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6291544437408447},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6174089908599854},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.6173256635665894},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5470987558364868},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4816412031650543},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44553330540657043},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3252676725387573},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2546716630458832},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2168944776058197},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07450908422470093}],"concepts":[{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.7892165184020996},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.6946939826011658},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6291544437408447},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6174089908599854},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.6173256635665894},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5470987558364868},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4816412031650543},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44553330540657043},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3252676725387573},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2546716630458832},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2168944776058197},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07450908422470093},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012568","descriptor_name":"Schizosaccharomyces","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012568","descriptor_name":"Schizosaccharomyces","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012568","descriptor_name":"Schizosaccharomyces","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-015-0818-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0818-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0818-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26573684","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26573684","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4647709","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4647709","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0818-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0818-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0818-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1165225680","display_name":null,"funder_award_id":"61571152","funder_id":"https://openalex.org/F4320335773","funder_display_name":"National High-tech Research and Development Program"},{"id":"https://openalex.org/G1316849425","display_name":null,"funder_award_id":"6157115","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2082826544","display_name":null,"funder_award_id":"Postdoctoral","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2174799674","display_name":null,"funder_award_id":"2012AA020409","funder_id":"https://openalex.org/F4320335773","funder_display_name":"National High-tech Research and Development Program"},{"id":"https://openalex.org/G2476221792","display_name":null,"funder_award_id":"Heilongjiang","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2981938667","display_name":null,"funder_award_id":"Shenzhen","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3094467136","display_name":null,"funder_award_id":"2012AA02A601","funder_id":"https://openalex.org/F4320335773","funder_display_name":"National High-tech Research and Development Program"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3598598921","display_name":null,"funder_award_id":"2012AA02A601","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3686742459","display_name":null,"funder_award_id":"02054","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3757194791","display_name":null,"funder_award_id":"JCYJ20","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4002265710","display_name":null,"funder_award_id":"61571152","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4020255992","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5139084455","display_name":null,"funder_award_id":"41400298-9-15057","funder_id":"https://openalex.org/F4320323085","funder_display_name":"Natural Science Foundation of Heilongjiang Province"},{"id":"https://openalex.org/G5760752404","display_name":null,"funder_award_id":"Projects","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5875849453","display_name":null,"funder_award_id":"61173085","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994494637","display_name":null,"funder_award_id":"and 81","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6238126790","display_name":null,"funder_award_id":"81402054","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G678734243","display_name":null,"funder_award_id":"201206","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6965487604","display_name":null,"funder_award_id":"2012AA02A604","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G782616562","display_name":null,"funder_award_id":"F201214","funder_id":"https://openalex.org/F4320323085","funder_display_name":"Natural Science Foundation of Heilongjiang Province"},{"id":"https://openalex.org/G7860310511","display_name":null,"funder_award_id":"8143038","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G816061595","display_name":null,"funder_award_id":"2012AA020409","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323085","display_name":"Natural Science Foundation of Heilongjiang Province","ror":null},{"id":"https://openalex.org/F4320329791","display_name":"Shenzhen Fundamental Research Program","ror":null},{"id":"https://openalex.org/F4320335773","display_name":"National High-tech Research and Development Program","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2173935179.pdf","grobid_xml":"https://content.openalex.org/works/W2173935179.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1598134722","https://openalex.org/W1966822396","https://openalex.org/W1987847236","https://openalex.org/W1990601349","https://openalex.org/W2037953066","https://openalex.org/W2046137036","https://openalex.org/W2055043387","https://openalex.org/W2085985800","https://openalex.org/W2096634299","https://openalex.org/W2098531465","https://openalex.org/W2102610257","https://openalex.org/W2107772251","https://openalex.org/W2111350087","https://openalex.org/W2111829451","https://openalex.org/W2112749286","https://openalex.org/W2113287691","https://openalex.org/W2117131162","https://openalex.org/W2126948011","https://openalex.org/W2127768708","https://openalex.org/W2128114769","https://openalex.org/W2130530163","https://openalex.org/W2136145671","https://openalex.org/W2141920662","https://openalex.org/W2152073175","https://openalex.org/W2156273926","https://openalex.org/W2158804744","https://openalex.org/W2160969485","https://openalex.org/W2161454753","https://openalex.org/W2161546116","https://openalex.org/W2171970660"],"related_works":["https://openalex.org/W2213265806","https://openalex.org/W2166654698","https://openalex.org/W2079322808","https://openalex.org/W1975465622","https://openalex.org/W1977744696","https://openalex.org/W4211093350","https://openalex.org/W2061338306","https://openalex.org/W2779945812","https://openalex.org/W2123933193","https://openalex.org/W2178173465"],"abstract_inverted_index":{"We":[0],"tested":[1],"the":[2,57],"performance":[3],"of":[4],"misFinder":[5,15,29,34,67],"on":[6],"both":[7],"simulated":[8],"and":[9,14,32,37,51,54],"real":[10],"paired-end":[11],"reads":[12],"data,":[13],"gave":[16],"accurate":[17],"error":[18],"calls":[19],"with":[20,30,46],"only":[21],"very":[22,47],"few":[23,48],"miscalls.":[24],"And,":[25],"we":[26],"further":[27],"compared":[28],"QUAST":[31,36],"REAPR.":[33],"outperformed":[35],"REAPR":[38],"by":[39],"1)":[40],"identified":[41],"more":[42],"true":[43],"positive":[44],"mis-assemblies":[45],"false":[49,52],"positives":[50],"negatives,":[53],"2)":[55],"distinguished":[56],"correct":[58],"assemblies":[59],"corresponding":[60],"to":[61],"structural":[62],"variations":[63],"from":[64,72],"mis-assembled":[65],"sequence.":[66],"can":[68],"be":[69],"freely":[70],"downloaded":[71],"https://github.com/hitbio/misFinder.":[73]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
