{"id":"https://openalex.org/W2171971501","doi":"https://doi.org/10.1186/s12859-015-0810-y","title":"Estimation of evolutionary parameters using short, random and partial sequences from mixed samples of anonymous individuals","display_name":"Estimation of evolutionary parameters using short, random and partial sequences from mixed samples of anonymous individuals","publication_year":2015,"publication_date":"2015-11-04","ids":{"openalex":"https://openalex.org/W2171971501","doi":"https://doi.org/10.1186/s12859-015-0810-y","mag":"2171971501","pmid":"https://pubmed.ncbi.nlm.nih.gov/26536860"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0810-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0810-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0810-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0810-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025044285","display_name":"Steven Wu","orcid":"https://orcid.org/0000-0002-7685-8009"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Steven H. Wu","raw_affiliation_strings":["Biodesign Institute, Arizona State University, Tempe, AZ, 85287, USA. stevenwu@asu.edu","Department of Biology, Duke University, Box 90338, Durham, NC, 27708, USA. stevenwu@asu.edu","Biodesign Institute, Arizona State University, Tempe, AZ, 85287, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biodesign Institute, Arizona State University, Tempe, AZ, 85287, USA. stevenwu@asu.edu","institution_ids":["https://openalex.org/I55732556"]},{"raw_affiliation_string":"Department of Biology, Duke University, Box 90338, Durham, NC, 27708, USA. stevenwu@asu.edu","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Biodesign Institute, Arizona State University, Tempe, AZ, 85287, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015045944","display_name":"Allen G. Rodrigo","orcid":"https://orcid.org/0000-0002-8327-7317"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I6002401","display_name":"National Evolutionary Synthesis Center","ror":"https://ror.org/001ykb961","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I6002401"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Allen G. Rodrigo","raw_affiliation_strings":["Department of Biology, Duke University, Box 90338, Durham, NC, 27708, USA. a.rodrigo@nescent.org","The National Evolutionary Synthesis Center, Durham, NC, 27705, USA. a.rodrigo@nescent.org","Department of Biology, Duke University, Box 90338, Durham, NC, 27708, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Duke University, Box 90338, Durham, NC, 27708, USA. a.rodrigo@nescent.org","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"The National Evolutionary Synthesis Center, Durham, NC, 27705, USA. a.rodrigo@nescent.org","institution_ids":["https://openalex.org/I6002401"]},{"raw_affiliation_string":"Department of Biology, Duke University, Box 90338, Durham, NC, 27708, USA","institution_ids":["https://openalex.org/I170897317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5025044285"],"corresponding_institution_ids":["https://openalex.org/I170897317","https://openalex.org/I55732556"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06118889,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"16","issue":"1","first_page":"357","last_page":"357"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.4115999937057495,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.4115999937057495,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.179299995303154,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.09130000323057175,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/markov-chain-monte-carlo","display_name":"Markov chain Monte Carlo","score":0.8963484764099121},{"id":"https://openalex.org/keywords/approximate-bayesian-computation","display_name":"Approximate Bayesian computation","score":0.6152397990226746},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.6132231950759888},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5018525123596191},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.43917202949523926},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4390184283256531},{"id":"https://openalex.org/keywords/sample-size-determination","display_name":"Sample size determination","score":0.4371154308319092},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4125211536884308},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.41089871525764465},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3394259214401245},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.28867560625076294},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2519073188304901},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17655977606773376}],"concepts":[{"id":"https://openalex.org/C111350023","wikidata":"https://www.wikidata.org/wiki/Q1191869","display_name":"Markov chain Monte Carlo","level":3,"score":0.8963484764099121},{"id":"https://openalex.org/C2779377595","wikidata":"https://www.wikidata.org/wiki/Q21045424","display_name":"Approximate Bayesian computation","level":3,"score":0.6152397990226746},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.6132231950759888},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5018525123596191},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.43917202949523926},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4390184283256531},{"id":"https://openalex.org/C129848803","wikidata":"https://www.wikidata.org/wiki/Q2564360","display_name":"Sample size determination","level":2,"score":0.4371154308319092},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4125211536884308},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.41089871525764465},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3394259214401245},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.28867560625076294},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2519073188304901},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17655977606773376},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011156","descriptor_name":"Population Density","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011156","descriptor_name":"Population Density","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011156","descriptor_name":"Population Density","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016001","descriptor_name":"Confidence Intervals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016001","descriptor_name":"Confidence Intervals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016001","descriptor_name":"Confidence Intervals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016018","descriptor_name":"Least-Squares Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016018","descriptor_name":"Least-Squares Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016018","descriptor_name":"Least-Squares Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-015-0810-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0810-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0810-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26536860","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26536860","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:item:41582","is_oa":true,"landing_page_url":"http://hdl.handle.net/2286/R.I.41582","pdf_url":null,"source":{"id":"https://openalex.org/S4306400254","display_name":"Arizona State University Library Digital Repository (Arizona State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I55732556","host_organization_name":"Arizona State University","host_organization_lineage":["https://openalex.org/I55732556"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:openresearch-repository.anu.edu.au:1885/153021","is_oa":false,"landing_page_url":"http://hdl.handle.net/1885/153021","pdf_url":null,"source":{"id":"https://openalex.org/S4306402539","display_name":"ANU Open Research (Australian National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I118347636","host_organization_name":"Australian National University","host_organization_lineage":["https://openalex.org/I118347636"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4634753","is_oa":true,"landing_page_url":"http://doi.org/10.1186/s12859-015-0810-y","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0810-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0810-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0810-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2171971501.pdf","grobid_xml":"https://content.openalex.org/works/W2171971501.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1546828436","https://openalex.org/W1594863551","https://openalex.org/W1599074840","https://openalex.org/W1824173445","https://openalex.org/W1882169997","https://openalex.org/W1965175390","https://openalex.org/W1970809460","https://openalex.org/W1993577356","https://openalex.org/W2037809979","https://openalex.org/W2045973738","https://openalex.org/W2047516879","https://openalex.org/W2056760934","https://openalex.org/W2084821192","https://openalex.org/W2101517901","https://openalex.org/W2110835349","https://openalex.org/W2111207219","https://openalex.org/W2114200698","https://openalex.org/W2116416291","https://openalex.org/W2118526609","https://openalex.org/W2120571246","https://openalex.org/W2128945836","https://openalex.org/W2134007392","https://openalex.org/W2138309709","https://openalex.org/W2148698435","https://openalex.org/W2151265018","https://openalex.org/W2153737961","https://openalex.org/W2163326395","https://openalex.org/W2165038845","https://openalex.org/W2167030304","https://openalex.org/W3217097258","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2151689585","https://openalex.org/W2380816257","https://openalex.org/W3087071515","https://openalex.org/W1985846739","https://openalex.org/W2733224243","https://openalex.org/W2109606780","https://openalex.org/W1480082381","https://openalex.org/W4299976848","https://openalex.org/W308423894","https://openalex.org/W1436597729"],"abstract_inverted_index":{"BACKGROUND:":[0],"Over":[1],"the":[2,16,30,51,99,109,113,121,145,149,164,200,207,231,251,282,291,297,305],"last":[3],"decade,":[4],"next":[5],"generation":[6],"sequencing":[7,17],"(NGS)":[8],"has":[9],"become":[10],"widely":[11],"available,":[12],"and":[13,69,126,287],"is":[14,194,275,288,322],"now":[15],"technology":[18],"of":[19,44,53,87,95,101,123,148,186,197,202,233,273,284,290,293,313],"choice":[20],"for":[21,29,246,320],"most":[22],"researchers.":[23],"Nonetheless,":[24],"NGS":[25,308],"presents":[26],"a":[27,41,85,92,169,178,182,195,243],"challenge":[28],"evolutionary":[31,37,81,187,226,247],"biologists":[32],"who":[33],"wish":[34],"to":[35,79,119,141,173,224,260,303],"estimate":[36,225],"genetic":[38,82,227],"parameters":[39,83,188,228,254],"from":[40,84,91,161],"mixed":[42,93],"sample":[43,94],"unlabelled":[45],"or":[46,143],"untagged":[47],"individuals,":[48],"especially":[49],"when":[50],"reconstruction":[52],"full":[54],"length":[55],"haplotypes":[56],"can":[57],"be":[58,240],"unreliable.":[59],"We":[60,116,219],"propose":[61,220],"two":[62,221],"novel":[63,222],"approaches,":[64],"least":[65],"squares":[66],"estimation":[67,77,185],"(LS)":[68],"Approximate":[70],"Bayesian":[71,183],"Computation":[72],"Markov":[73],"chain":[74],"Monte":[75],"Carlo":[76],"(ABC-MCMC),":[78],"infer":[80],"collection":[86],"short-read":[88,285],"sequences":[89,295],"obtained":[90,175,215,262],"anonymous":[96],"DNA":[97],"using":[98,176,189,263],"frequencies":[100,205],"nucleotides":[102],"at":[103,324],"each":[104,234],"site":[105],"only":[106],"without":[107],"reconstructing":[108],"full-length":[110,190,294],"alignment":[111],"nor":[112],"phylogeny.":[114],"RESULTS:":[115],"used":[117],"simulations":[118],"evaluate":[120],"performance":[122],"these":[124],"algorithms,":[125],"our":[127],"results":[128],"demonstrate":[129],"that":[130,174,180,276],"LS":[131,237],"performs":[132],"poorly":[133],"because":[134],"bootstrap":[135],"95%":[136,154,209,268],"Confidence":[137],"Intervals":[138],"(CIs)":[139],"tend":[140],"under-":[142],"over-estimate":[144],"true":[146,165],"values":[147,167],"parameters.":[150],"In":[151],"contrast,":[152],"ABC-MCMC":[153,162,208,257,274,321],"Highest":[155],"Posterior":[156],"Density":[157],"(HPD)":[158],"intervals":[159],"recovered":[160,255],"enclosed":[163],"parameter":[166,248],"with":[168,199,266,281,310],"rate":[170],"approximately":[171],"equivalent":[172],"BEAST,":[177,264],"program":[179],"implements":[181],"MCMC":[184],"sequences.":[191],"Because":[192],"there":[193],"loss":[196],"information":[198],"use":[201],"sitewise":[203],"nucleotide":[204],"alone,":[206],"HPDs":[210],"are":[211,258],"larger":[212,267],"than":[213],"those":[214,261],"by":[216,256],"BEAST.":[217],"CONCLUSION:":[218],"algorithms":[223],"based":[229],"on":[230,307],"proportion":[232],"nucleotide.":[235],"The":[236,317],"method":[238,245],"cannot":[239],"recommended":[241],"as":[242],"standalone":[244],"estimation.":[249],"On":[250],"other":[252],"hand,":[253],"comparable":[259],"but":[265],"HPDs.":[269],"One":[270],"major":[271],"advantage":[272],"computational":[277],"time":[278],"scales":[279],"linearly":[280],"number":[283,292],"sequences,":[286],"independent":[289],"in":[296],"original":[298],"data.":[299],"This":[300],"allows":[301],"us":[302],"perform":[304],"analysis":[306],"datasets":[309],"large":[311],"numbers":[312],"short":[314],"read":[315],"fragments.":[316],"source":[318],"code":[319],"available":[323],"https://github.com/stevenhwu/SF-ABC.":[325]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
