{"id":"https://openalex.org/W1913523035","doi":"https://doi.org/10.1186/s12859-015-0782-y","title":"CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels","display_name":"CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels","publication_year":2015,"publication_date":"2015-10-26","ids":{"openalex":"https://openalex.org/W1913523035","doi":"https://doi.org/10.1186/s12859-015-0782-y","mag":"1913523035","pmid":"https://pubmed.ncbi.nlm.nih.gov/26503371"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0782-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0782-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0782-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0782-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069504905","display_name":"Kimmo Kartasalo","orcid":"https://orcid.org/0000-0002-9470-4783"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Kimmo Kartasalo","raw_affiliation_strings":["Department of Automation Science and Engineering, Tampere University of Technology, BioMediTech, Tampere, Finland. kimmo.kartasalo@uta.fi","Department of Automation Science and Engineering, Tampere University of Technology, BioMediTech, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Automation Science and Engineering, Tampere University of Technology, BioMediTech, Tampere, Finland. kimmo.kartasalo@uta.fi","institution_ids":[]},{"raw_affiliation_string":"Department of Automation Science and Engineering, Tampere University of Technology, BioMediTech, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021146622","display_name":"Risto-Pekka P\u00f6l\u00f6nen","orcid":"https://orcid.org/0000-0002-9656-0170"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Risto-Pekka P\u00f6l\u00f6nen","raw_affiliation_strings":["School of Medicine, University of Tampere, Tampere, Finland. risto-pekka.polonen@staff.uta.fi","University of Tampere, BioMediTech, Tampere, Finland. risto-pekka.polonen@staff.uta.fi","University of Tampere, BioMediTech, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"School of Medicine, University of Tampere, Tampere, Finland. risto-pekka.polonen@staff.uta.fi","institution_ids":[]},{"raw_affiliation_string":"University of Tampere, BioMediTech, Tampere, Finland. risto-pekka.polonen@staff.uta.fi","institution_ids":[]},{"raw_affiliation_string":"University of Tampere, BioMediTech, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035167915","display_name":"Marisa Ojala","orcid":"https://orcid.org/0000-0003-1796-2153"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Marisa Ojala","raw_affiliation_strings":["University of Tampere, BioMediTech, Tampere, Finland. marisa.ojala@uta.fi","University of Tampere, BioMediTech, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"University of Tampere, BioMediTech, Tampere, Finland. marisa.ojala@uta.fi","institution_ids":[]},{"raw_affiliation_string":"University of Tampere, BioMediTech, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031673195","display_name":"Jyrki Rasku","orcid":"https://orcid.org/0000-0001-6061-6868"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jyrki Rasku","raw_affiliation_strings":["School of Information Sciences, University of Tampere, Tampere, Finland. jyrki.rasku@uta.fi","School of Information Sciences, University of Tampere, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"School of Information Sciences, University of Tampere, Tampere, Finland. jyrki.rasku@uta.fi","institution_ids":[]},{"raw_affiliation_string":"School of Information Sciences, University of Tampere, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010105730","display_name":"Jukka Lekkala","orcid":"https://orcid.org/0000-0001-9293-2240"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jukka Lekkala","raw_affiliation_strings":["Department of Automation Science and Engineering, Tampere University of Technology, BioMediTech, Tampere, Finland. jukka.lekkala@tut.fi","Department of Automation Science and Engineering, Tampere University of Technology, BioMediTech, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Automation Science and Engineering, Tampere University of Technology, BioMediTech, Tampere, Finland. jukka.lekkala@tut.fi","institution_ids":[]},{"raw_affiliation_string":"Department of Automation Science and Engineering, Tampere University of Technology, BioMediTech, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027482380","display_name":"Katriina Aalto\u2010Set\u00e4l\u00e4","orcid":"https://orcid.org/0000-0003-0334-2172"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]},{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Katriina Aalto-Set\u00e4l\u00e4","raw_affiliation_strings":["Heart Hospital, Tampere University Hospital, Tampere, Finland. katriina.aalto-setala@uta.fi","School of Medicine, University of Tampere, Tampere, Finland. katriina.aalto-setala@uta.fi","University of Tampere, BioMediTech, Tampere, Finland. katriina.aalto-setala@uta.fi","University of Tampere, BioMediTech, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Heart Hospital, Tampere University Hospital, Tampere, Finland. katriina.aalto-setala@uta.fi","institution_ids":[]},{"raw_affiliation_string":"School of Medicine, University of Tampere, Tampere, Finland. katriina.aalto-setala@uta.fi","institution_ids":[]},{"raw_affiliation_string":"University of Tampere, BioMediTech, Tampere, Finland. katriina.aalto-setala@uta.fi","institution_ids":[]},{"raw_affiliation_string":"University of Tampere, BioMediTech, Tampere, Finland","institution_ids":["https://openalex.org/I166825849","https://openalex.org/I4210133110"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082951245","display_name":"Pasi Kallio","orcid":"https://orcid.org/0000-0002-2890-6782"},"institutions":[{"id":"https://openalex.org/I4210133110","display_name":"Tampere University","ror":null,"country_code":"FI","type":null,"lineage":["https://openalex.org/I4210133110"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Pasi Kallio","raw_affiliation_strings":["Department of Automation Science and Engineering, Tampere University of Technology, BioMediTech, Tampere, Finland. pasi.kallio@tut.fi","Department of Automation Science and Engineering, Tampere University of Technology, BioMediTech, Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Automation Science and Engineering, Tampere University of Technology, BioMediTech, Tampere, Finland. pasi.kallio@tut.fi","institution_ids":[]},{"raw_affiliation_string":"Department of Automation Science and Engineering, Tampere University of Technology, BioMediTech, Tampere, Finland","institution_ids":["https://openalex.org/I4210133110"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5069504905"],"corresponding_institution_ids":["https://openalex.org/I4210133110"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.8027,"has_fulltext":true,"cited_by_count":59,"citation_normalized_percentile":{"value":0.95291036,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"16","issue":"1","first_page":"344","last_page":"344"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11190","display_name":"3D Printing in Biomedical Research","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7060818076133728},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6506745219230652},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5498523712158203},{"id":"https://openalex.org/keywords/orientation","display_name":"Orientation (vector space)","score":0.5181849598884583},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.49081000685691833},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.459264874458313},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.42366573214530945},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.4128209352493286},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3636987507343292},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34973615407943726},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.2769891619682312},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16210252046585083},{"id":"https://openalex.org/keywords/power","display_name":"Power (physics)","score":0.15282398462295532}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7060818076133728},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6506745219230652},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5498523712158203},{"id":"https://openalex.org/C16345878","wikidata":"https://www.wikidata.org/wiki/Q107472979","display_name":"Orientation (vector space)","level":2,"score":0.5181849598884583},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.49081000685691833},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.459264874458313},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.42366573214530945},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.4128209352493286},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3636987507343292},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34973615407943726},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.2769891619682312},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16210252046585083},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.15282398462295532},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002454","descriptor_name":"Cell Differentiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003599","descriptor_name":"Cytoskeleton","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003599","descriptor_name":"Cytoskeleton","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003599","descriptor_name":"Cytoskeleton","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003599","descriptor_name":"Cytoskeleton","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D003599","descriptor_name":"Cytoskeleton","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D003599","descriptor_name":"Cytoskeleton","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005583","descriptor_name":"Fourier Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013314","descriptor_name":"Stress, Mechanical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013314","descriptor_name":"Stress, Mechanical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013314","descriptor_name":"Stress, Mechanical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018920","descriptor_name":"Coculture Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018920","descriptor_name":"Coculture Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018920","descriptor_name":"Coculture Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D032383","descriptor_name":"Myocytes, Cardiac","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D032383","descriptor_name":"Myocytes, Cardiac","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D032383","descriptor_name":"Myocytes, Cardiac","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D032383","descriptor_name":"Myocytes, Cardiac","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D032383","descriptor_name":"Myocytes, Cardiac","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D032383","descriptor_name":"Myocytes, Cardiac","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057026","descriptor_name":"Induced Pluripotent Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D057026","descriptor_name":"Induced Pluripotent Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D057026","descriptor_name":"Induced Pluripotent Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D057026","descriptor_name":"Induced Pluripotent Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057026","descriptor_name":"Induced Pluripotent Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057026","descriptor_name":"Induced Pluripotent Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-015-0782-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0782-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0782-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26503371","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26503371","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:tampub.uta.fi:10024/98133","is_oa":false,"landing_page_url":"http://tampub.uta.fi/handle/10024/98133","pdf_url":null,"source":{"id":"https://openalex.org/S4306401860","display_name":"Tampere University Institutional Repository (Tampere University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I150589677","host_organization_name":"Tampere University of Applied Sciences","host_organization_lineage":["https://openalex.org/I150589677"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:4624586","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4624586","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:trepo.tuni.fi:10024/212573","is_oa":true,"landing_page_url":"https://trepo.tuni.fi/handle/10024/212573","pdf_url":null,"source":{"id":"https://openalex.org/S7407055260","display_name":"Trepo - Institutional Repository of Tampere University","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:trepo.tuni.fi:10024/98133","is_oa":false,"landing_page_url":"https://trepo.tuni.fi/handle/10024/98133","pdf_url":null,"source":{"id":"https://openalex.org/S7407055260","display_name":"Trepo - Institutional Repository of Tampere University","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0782-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0782-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0782-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309883","display_name":"Foundation for Cardiovascular Research","ror":null},{"id":"https://openalex.org/F4320320929","display_name":"Universiteit Leiden","ror":"https://ror.org/027bh9e22"},{"id":"https://openalex.org/F4320321855","display_name":"Tekes","ror":"https://ror.org/02ag8cq23"},{"id":"https://openalex.org/F4320323080","display_name":"Leids Universitair Medisch Centrum","ror":"https://ror.org/05xvt9f17"},{"id":"https://openalex.org/F4320323333","display_name":"Syd\u00e4ntutkimuss\u00e4\u00e4ti\u00f6","ror":"https://ror.org/020apt798"},{"id":"https://openalex.org/F4320326147","display_name":"Pirkanmaan Sairaanhoitopiiri","ror":"https://ror.org/01vf7he45"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1913523035.pdf","grobid_xml":"https://content.openalex.org/works/W1913523035.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W121885701","https://openalex.org/W1602568023","https://openalex.org/W1897507705","https://openalex.org/W1936727810","https://openalex.org/W1979955583","https://openalex.org/W1981653251","https://openalex.org/W2013657823","https://openalex.org/W2013926604","https://openalex.org/W2025187846","https://openalex.org/W2033765226","https://openalex.org/W2035004541","https://openalex.org/W2036240459","https://openalex.org/W2039031140","https://openalex.org/W2039865631","https://openalex.org/W2046536479","https://openalex.org/W2066234723","https://openalex.org/W2070674844","https://openalex.org/W2073599119","https://openalex.org/W2074295439","https://openalex.org/W2082682623","https://openalex.org/W2088182171","https://openalex.org/W2088686740","https://openalex.org/W2092753756","https://openalex.org/W2099540110","https://openalex.org/W2102883338","https://openalex.org/W2106822551","https://openalex.org/W2121469024","https://openalex.org/W2122060214","https://openalex.org/W2125987139","https://openalex.org/W2127722806","https://openalex.org/W2132088961","https://openalex.org/W2133338187","https://openalex.org/W2138977668","https://openalex.org/W2141118238","https://openalex.org/W2148646485","https://openalex.org/W2151958789","https://openalex.org/W2153958709","https://openalex.org/W2168687312","https://openalex.org/W2324601400","https://openalex.org/W2336250459","https://openalex.org/W2413954485","https://openalex.org/W4246928383"],"related_works":["https://openalex.org/W2012531322","https://openalex.org/W2785900585","https://openalex.org/W2353730437","https://openalex.org/W2490303674","https://openalex.org/W2609066826","https://openalex.org/W2810752900","https://openalex.org/W3186538219","https://openalex.org/W2365677836","https://openalex.org/W2531295127","https://openalex.org/W2355063696"],"abstract_inverted_index":{"CytoSpectre,":[0],"a":[1],"versatile,":[2],"easy-to-use":[3],"software":[4,60],"tool":[5,15,35],"for":[6,55],"spectral":[7],"analysis":[8],"of":[9,51],"microscopy":[10],"images":[11,21],"was":[12],"developed.":[13],"The":[14],"is":[16],"compatible":[17],"with":[18,43],"most":[19],"2D":[20],"and":[22,47],"can":[23],"be":[24,37,63],"used":[25],"to":[26,36],"analyze":[27],"targets":[28],"at":[29],"different":[30],"scales.":[31],"We":[32],"expect":[33],"the":[34,56,59],"useful":[38,64],"in":[39,65],"diverse":[40],"applications":[41],"dealing":[42],"structures":[44],"whose":[45],"orientation":[46],"size":[48],"distributions":[49],"are":[50],"interest.":[52],"While":[53],"designed":[54],"biological":[57],"field,":[58],"could":[61],"also":[62],"non-biological":[66],"applications.":[67]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}