{"id":"https://openalex.org/W2138364546","doi":"https://doi.org/10.1186/s12859-015-0762-2","title":"Survey statistics of automated segmentations applied to optical imaging of mammalian cells","display_name":"Survey statistics of automated segmentations applied to optical imaging of mammalian cells","publication_year":2015,"publication_date":"2015-10-15","ids":{"openalex":"https://openalex.org/W2138364546","doi":"https://doi.org/10.1186/s12859-015-0762-2","mag":"2138364546","pmid":"https://pubmed.ncbi.nlm.nih.gov/26472075"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0762-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0762-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0762-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0762-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015678162","display_name":"Peter Bajcsy","orcid":"https://orcid.org/0000-0002-6968-2615"},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"government","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Peter Bajcsy","raw_affiliation_strings":["Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. peter.bajcsy@nist.gov"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. peter.bajcsy@nist.gov","institution_ids":["https://openalex.org/I1321296531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033513737","display_name":"Antonio Cardone","orcid":"https://orcid.org/0000-0001-6865-3524"},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"government","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Antonio Cardone","raw_affiliation_strings":["Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. antonio.cardone@nist.gov"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. antonio.cardone@nist.gov","institution_ids":["https://openalex.org/I1321296531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058861710","display_name":"Joe Chalfoun","orcid":"https://orcid.org/0000-0001-8901-7076"},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"government","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joe Chalfoun","raw_affiliation_strings":["Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. joe.chalfoun@nist.gov"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. joe.chalfoun@nist.gov","institution_ids":["https://openalex.org/I1321296531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025865534","display_name":"Michael Halter","orcid":"https://orcid.org/0000-0002-1628-324X"},"institutions":[{"id":"https://openalex.org/I4210147263","display_name":"Material Measurement Laboratory","ror":"https://ror.org/04a0y3b96","country_code":"US","type":"government","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065","https://openalex.org/I4210147263"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Halter","raw_affiliation_strings":["Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. michael.halter@nist.gov"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. michael.halter@nist.gov","institution_ids":["https://openalex.org/I4210147263"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027650126","display_name":"Derek Juba","orcid":null},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"government","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Derek Juba","raw_affiliation_strings":["Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. derek.juba@nist.gov"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. derek.juba@nist.gov","institution_ids":["https://openalex.org/I1321296531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040536435","display_name":"Marcin Kocio\u0142ek","orcid":"https://orcid.org/0000-0002-4359-1539"},"institutions":[{"id":"https://openalex.org/I188884621","display_name":"Lodz University of Technology","ror":"https://ror.org/00s8fpf52","country_code":"PL","type":"education","lineage":["https://openalex.org/I188884621"]},{"id":"https://openalex.org/I34250744","display_name":"University of \u0141\u00f3d\u017a","ror":"https://ror.org/05cq64r17","country_code":"PL","type":"education","lineage":["https://openalex.org/I34250744"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Marcin Kociolek","raw_affiliation_strings":["Lodz University of Technology, Lodz, Poland. marcin.kociolek@gmail.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lodz University of Technology, Lodz, Poland. marcin.kociolek@gmail.com","institution_ids":["https://openalex.org/I188884621","https://openalex.org/I34250744"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056299590","display_name":"Michael Majurski","orcid":null},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"government","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Majurski","raw_affiliation_strings":["Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. michael.majurski@nist.gov"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. michael.majurski@nist.gov","institution_ids":["https://openalex.org/I1321296531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059901229","display_name":"Adele P. Peskin","orcid":"https://orcid.org/0000-0003-4913-5566"},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"government","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adele Peskin","raw_affiliation_strings":["Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. adele.peskin@nist.gov"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. adele.peskin@nist.gov","institution_ids":["https://openalex.org/I1321296531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012934002","display_name":"Carl G. Simon","orcid":"https://orcid.org/0000-0001-5209-3577"},"institutions":[{"id":"https://openalex.org/I4210109969","display_name":"Physical Measurement Laboratory","ror":"https://ror.org/016s8vs02","country_code":"US","type":"government","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065","https://openalex.org/I4210109969"]},{"id":"https://openalex.org/I4210147263","display_name":"Material Measurement Laboratory","ror":"https://ror.org/04a0y3b96","country_code":"US","type":"government","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065","https://openalex.org/I4210147263"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carl Simon","raw_affiliation_strings":["Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. carl.simon@nist.gov"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. carl.simon@nist.gov","institution_ids":["https://openalex.org/I4210109969","https://openalex.org/I4210147263"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040050737","display_name":"Mylene Simon","orcid":null},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"government","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mylene Simon","raw_affiliation_strings":["Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. mylene.simon@nist.gov"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. mylene.simon@nist.gov","institution_ids":["https://openalex.org/I1321296531"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065393523","display_name":"Antoine Vandecreme","orcid":null},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"government","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Antoine Vandecreme","raw_affiliation_strings":["Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. antoine.vandecreme@nist.gov"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. antoine.vandecreme@nist.gov","institution_ids":["https://openalex.org/I1321296531"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003799889","display_name":"Mary Brady","orcid":null},"institutions":[{"id":"https://openalex.org/I1321296531","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416","country_code":"US","type":"government","lineage":["https://openalex.org/I1321296531","https://openalex.org/I1343035065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary Brady","raw_affiliation_strings":["Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. mary.brady@nist.gov"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, USA. mary.brady@nist.gov","institution_ids":["https://openalex.org/I1321296531"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5015678162"],"corresponding_institution_ids":["https://openalex.org/I1321296531"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":6.4707,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.9599615,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"16","issue":"1","first_page":"330","last_page":"330"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.7009999752044678,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.7009999752044678,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.07159999758005142,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.03889999911189079,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4997999668121338},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45878130197525024},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4111612141132355},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32170698046684265},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31934088468551636},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13762027025222778},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12202084064483643},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09184154868125916}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4997999668121338},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45878130197525024},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4111612141132355},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32170698046684265},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31934088468551636},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13762027025222778},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12202084064483643},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09184154868125916}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D061848","descriptor_name":"Optical Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D061848","descriptor_name":"Optical Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D061848","descriptor_name":"Optical Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-015-0762-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0762-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0762-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26472075","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26472075","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4608288","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4608288","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0762-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0762-2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0762-2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6206189057","display_name":null,"funder_award_id":"0000-0002-6968-2615","funder_id":"https://openalex.org/F4320332178","funder_display_name":"National Institute of Standards and Technology"}],"funders":[{"id":"https://openalex.org/F4320332178","display_name":"National Institute of Standards and Technology","ror":"https://ror.org/05xpvk416"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138364546.pdf","grobid_xml":"https://content.openalex.org/works/W2138364546.grobid-xml"},"referenced_works_count":167,"referenced_works":["https://openalex.org/W202223315","https://openalex.org/W635996316","https://openalex.org/W1501433591","https://openalex.org/W1506393112","https://openalex.org/W1512223935","https://openalex.org/W1533713273","https://openalex.org/W1540070193","https://openalex.org/W1543724815","https://openalex.org/W1553863556","https://openalex.org/W1554755602","https://openalex.org/W1558633536","https://openalex.org/W1563397979","https://openalex.org/W1592522063","https://openalex.org/W1599250775","https://openalex.org/W1601798363","https://openalex.org/W1606010310","https://openalex.org/W1629174936","https://openalex.org/W1651609297","https://openalex.org/W1665027466","https://openalex.org/W1731215281","https://openalex.org/W1747769665","https://openalex.org/W1824361694","https://openalex.org/W1835740130","https://openalex.org/W1887326156","https://openalex.org/W1907574857","https://openalex.org/W1912497050","https://openalex.org/W1913718246","https://openalex.org/W1931699776","https://openalex.org/W1967188390","https://openalex.org/W1967574983","https://openalex.org/W1970464197","https://openalex.org/W1970480709","https://openalex.org/W1974519458","https://openalex.org/W1974694769","https://openalex.org/W1975128832","https://openalex.org/W1978372216","https://openalex.org/W1979432452","https://openalex.org/W1980181946","https://openalex.org/W1980774547","https://openalex.org/W1982902545","https://openalex.org/W1985700335","https://openalex.org/W1987195912","https://openalex.org/W1987777080","https://openalex.org/W1988754065","https://openalex.org/W1988856432","https://openalex.org/W1989012045","https://openalex.org/W1989493360","https://openalex.org/W1995899361","https://openalex.org/W2000259686","https://openalex.org/W2000467496","https://openalex.org/W2003238068","https://openalex.org/W2003345727","https://openalex.org/W2003382153","https://openalex.org/W2003927787","https://openalex.org/W2004369799","https://openalex.org/W2005325710","https://openalex.org/W2005542405","https://openalex.org/W2006327073","https://openalex.org/W2006525216","https://openalex.org/W2008043556","https://openalex.org/W2009023062","https://openalex.org/W2010030599","https://openalex.org/W2011287359","https://openalex.org/W2011603373","https://openalex.org/W2012163573","https://openalex.org/W2015540146","https://openalex.org/W2018227909","https://openalex.org/W2019150383","https://openalex.org/W2019637351","https://openalex.org/W2023701980","https://openalex.org/W2025213417","https://openalex.org/W2026632078","https://openalex.org/W2029430860","https://openalex.org/W2032159743","https://openalex.org/W2033585891","https://openalex.org/W2033943598","https://openalex.org/W2035993805","https://openalex.org/W2038976779","https://openalex.org/W2039808072","https://openalex.org/W2043057180","https://openalex.org/W2044688110","https://openalex.org/W2047936282","https://openalex.org/W2051864066","https://openalex.org/W2052093305","https://openalex.org/W2059229129","https://openalex.org/W2063781919","https://openalex.org/W2068751516","https://openalex.org/W2070118110","https://openalex.org/W2070441922","https://openalex.org/W2072561351","https://openalex.org/W2073057651","https://openalex.org/W2074075770","https://openalex.org/W2076927398","https://openalex.org/W2077181878","https://openalex.org/W2077688032","https://openalex.org/W2080008633","https://openalex.org/W2080805673","https://openalex.org/W2080823694","https://openalex.org/W2082793166","https://openalex.org/W2083111957","https://openalex.org/W2084534442","https://openalex.org/W2089748508","https://openalex.org/W2091655993","https://openalex.org/W2093950836","https://openalex.org/W2094538577","https://openalex.org/W2100138660","https://openalex.org/W2100334298","https://openalex.org/W2100834389","https://openalex.org/W2104580621","https://openalex.org/W2105909667","https://openalex.org/W2106114981","https://openalex.org/W2106515997","https://openalex.org/W2107294643","https://openalex.org/W2107554012","https://openalex.org/W2107804262","https://openalex.org/W2115283652","https://openalex.org/W2116973125","https://openalex.org/W2118601769","https://openalex.org/W2120601853","https://openalex.org/W2123813246","https://openalex.org/W2124020707","https://openalex.org/W2124167150","https://openalex.org/W2124426078","https://openalex.org/W2125173890","https://openalex.org/W2125493690","https://openalex.org/W2128013681","https://openalex.org/W2128350437","https://openalex.org/W2128728655","https://openalex.org/W2129140439","https://openalex.org/W2131976674","https://openalex.org/W2132649118","https://openalex.org/W2133003941","https://openalex.org/W2133059825","https://openalex.org/W2133338688","https://openalex.org/W2133487501","https://openalex.org/W2139791807","https://openalex.org/W2140099710","https://openalex.org/W2140286515","https://openalex.org/W2141273399","https://openalex.org/W2142002818","https://openalex.org/W2144272400","https://openalex.org/W2147385427","https://openalex.org/W2149404019","https://openalex.org/W2149482407","https://openalex.org/W2153208791","https://openalex.org/W2153755031","https://openalex.org/W2153870943","https://openalex.org/W2158453778","https://openalex.org/W2158787692","https://openalex.org/W2159960204","https://openalex.org/W2159982756","https://openalex.org/W2160041854","https://openalex.org/W2167279371","https://openalex.org/W2167728924","https://openalex.org/W2168166653","https://openalex.org/W2168221215","https://openalex.org/W2320839648","https://openalex.org/W2331980992","https://openalex.org/W2413895804","https://openalex.org/W2744239947","https://openalex.org/W3044583775","https://openalex.org/W4211095184","https://openalex.org/W4230506867","https://openalex.org/W4240422451","https://openalex.org/W4242732001","https://openalex.org/W4245578500","https://openalex.org/W6676356924"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,21,191,261],"goal":[2],"of":[3,24,47,112,135,178,187,202,213,219,225,246,264,273,275,296],"this":[4,88,90,113,265],"survey":[5,91,114,192,266],"paper":[6,92,193,267],"is":[7,93],"to":[8,103,129,139,195,209,258,293],"overview":[9,201],"cellular":[10,22,54,105,236,276],"measurements":[11,23,55,277],"using":[12],"optical":[13,210,227],"microscopy":[14,211],"imaging":[15,143,212],"followed":[16],"by":[17],"automated":[18,96,206,279],"image":[19,45],"segmentation.":[20],"primary":[25],"interest":[26],"are":[27,36,56,126,172],"taken":[28],"from":[29],"mammalian":[30,214],"cells":[31],"and":[32,115,123,163,184,231,243,253,278,287],"their":[33],"components.":[34],"They":[35],"denoted":[37],"as":[38,63,76,78,98],"two-":[39],"or":[40,43,72],"three-dimensional":[41],"(2D":[42],"3D)":[44],"objects":[46,134,138],"biological":[48],"interest.":[49],"In":[50,87],"our":[51],"applications,":[52],"such":[53,62],"important":[57],"for":[58,79,83,160,249],"understanding":[59],"cell":[60,64,68,73,85,226],"phenomena,":[61],"counts,":[65],"cell-scaffold":[66],"interactions,":[67],"colony":[69],"growth":[70],"rates,":[71],"pluripotency":[74],"stability,":[75],"well":[77],"establishing":[80],"quality":[81],"metrics":[82],"stem":[84],"therapies.":[86],"context,":[89],"focused":[94],"on":[95],"segmentation":[97,150,153,161,207,220,241,251],"a":[99,116,176,196,217,270,289],"software-based":[100],"measurement":[101],"leading":[102],"quantitative":[104],"measurements.":[106,167],"METHODS:":[107],"We":[108],"define":[109],"the":[110,130,199,223,244,284,297],"scope":[111],"classification":[117,218,274,294],"schema":[118],"first.":[119],"Next,":[120],"all":[121,169],"found":[122],"manually":[124],"filteredpublications":[125],"classified":[127,170],"according":[128],"main":[131],"categories:":[132],"(1)":[133,269],"interests":[136],"(or":[137],"be":[140],"segmented),":[141],"(2)":[142,281],"modalities,":[144],"(3)":[145,288],"digital":[146],"data":[147],"axes,":[148],"(4)":[149],"algorithms,":[151],"(5)":[152],"evaluations,":[154,242],"(6)":[155],"computational":[156,247],"hardware":[157],"platforms":[158,248],"used":[159],"acceleration,":[162],"(7)":[164],"object":[165],"(cellular)":[166],"Finally,":[168],"papers":[171,204,299],"converted":[173],"programmatically":[174],"into":[175],"set":[177],"hyperlinked":[179,291],"web":[180,290],"pages":[181],"with":[182],"occurrence":[183],"co-occurrence":[185,232],"statistics":[186,234,282,295],"assigned":[188],"categories.":[189],"RESULTS:":[190],"presents":[194],"reader:":[197],"(a)":[198],"state-of-the-art":[200],"published":[203,285],"about":[205,235,283],"applied":[208],"cells,":[215],"(b)":[216],"aspects":[221],"in":[222],"context":[224],"imaging,":[228],"(c)":[229],"histogram":[230],"summary":[233],"measurements,":[237],"segmentations,":[238],"segmented":[239],"objects,":[240],"use":[245],"accelerating":[250],"execution,":[252],"(d)":[254],"open":[255],"research":[256],"problems":[257],"pursue.":[259],"CONCLUSIONS:":[260],"novel":[262],"contributions":[263],"are:":[268],"new":[271],"type":[272],"segmentation,":[280],"literature,":[286],"interface":[292],"surveyed":[298],"at":[300],"https://isg.nist.gov/deepzoomweb/resources/survey/index.html.":[301]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
