{"id":"https://openalex.org/W2128263817","doi":"https://doi.org/10.1186/s12859-015-0705-y","title":"WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data","display_name":"WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data","publication_year":2015,"publication_date":"2015-09-02","ids":{"openalex":"https://openalex.org/W2128263817","doi":"https://doi.org/10.1186/s12859-015-0705-y","mag":"2128263817","pmid":"https://pubmed.ncbi.nlm.nih.gov/26335184"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0705-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0705-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0705-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0705-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008491141","display_name":"Gregory K. Farrant","orcid":"https://orcid.org/0000-0002-3774-3743"},"institutions":[{"id":"https://openalex.org/I2802436875","display_name":"Station Biologique de Roscoff","ror":"https://ror.org/03s0pzj56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210107625"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210117160","display_name":"Adaptation et Diversit\u00e9 en Milieu Marin","ror":"https://ror.org/0293jn610","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210107625","https://openalex.org/I4210117160"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Gregory K. Farrant","raw_affiliation_strings":["CNRS, UMR 7144 Adaptation and Diversity in the Marine Environment, Oceanic Plankton Group, Marine Phototrophic Prokaryotes team, Place Georges Teissier, CS 90074, 29688, Roscoff cedex, France","Sorbonne Universit\u00e9s, UPMC Univ. Paris 06, UMR 7144, Station Biologique, CS 90074, 29688, Roscoff cedex, France","MAPP - Procaryotes Phototrophes Marins = MArine Phototrophic Prokaryotes (France)","AD2M - Adaptation et diversit\u00e9 en milieu marin (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"CNRS, UMR 7144 Adaptation and Diversity in the Marine Environment, Oceanic Plankton Group, Marine Phototrophic Prokaryotes team, Place Georges Teissier, CS 90074, 29688, Roscoff cedex, France","institution_ids":["https://openalex.org/I4210117160","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Sorbonne Universit\u00e9s, UPMC Univ. Paris 06, UMR 7144, Station Biologique, CS 90074, 29688, Roscoff cedex, France","institution_ids":["https://openalex.org/I2802436875","https://openalex.org/I39804081"]},{"raw_affiliation_string":"MAPP - Procaryotes Phototrophes Marins = MArine Phototrophic Prokaryotes (France)","institution_ids":[]},{"raw_affiliation_string":"AD2M - Adaptation et diversit\u00e9 en milieu marin (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I4210117160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084366252","display_name":"Mark Hoebeke","orcid":"https://orcid.org/0000-0001-6311-9752"},"institutions":[{"id":"https://openalex.org/I2802436875","display_name":"Station Biologique de Roscoff","ror":"https://ror.org/03s0pzj56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210107625"]},{"id":"https://openalex.org/I4210117160","display_name":"Adaptation et Diversit\u00e9 en Milieu Marin","ror":"https://ror.org/0293jn610","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210107625","https://openalex.org/I4210117160"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mark Hoebeke","raw_affiliation_strings":["CNRS, FR 2424, ABiMS Platform, Station Biologique, Place Georges Teissier, CS 90074, 29688, Roscoff cedex, France","SBR - Station biologique de Roscoff [Roscoff] (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","AD2M - Adaptation et diversit\u00e9 en milieu marin (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"CNRS, FR 2424, ABiMS Platform, Station Biologique, Place Georges Teissier, CS 90074, 29688, Roscoff cedex, France","institution_ids":["https://openalex.org/I2802436875","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"SBR - Station biologique de Roscoff [Roscoff] (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I2802436875"]},{"raw_affiliation_string":"AD2M - Adaptation et diversit\u00e9 en milieu marin (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I4210117160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055622504","display_name":"Fr\u00e9d\u00e9ric Partensky","orcid":"https://orcid.org/0000-0003-1274-4050"},"institutions":[{"id":"https://openalex.org/I4210117160","display_name":"Adaptation et Diversit\u00e9 en Milieu Marin","ror":"https://ror.org/0293jn610","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210107625","https://openalex.org/I4210117160"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802436875","display_name":"Station Biologique de Roscoff","ror":"https://ror.org/03s0pzj56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210107625"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9ric Partensky","raw_affiliation_strings":["CNRS, UMR 7144 Adaptation and Diversity in the Marine Environment, Oceanic Plankton Group, Marine Phototrophic Prokaryotes team, Place Georges Teissier, CS 90074, 29688, Roscoff cedex, France","Sorbonne Universit\u00e9s, UPMC Univ. Paris 06, UMR 7144, Station Biologique, CS 90074, 29688, Roscoff cedex, France","MAPP - Procaryotes Phototrophes Marins = MArine Phototrophic Prokaryotes (France)","AD2M - Adaptation et diversit\u00e9 en milieu marin (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"CNRS, UMR 7144 Adaptation and Diversity in the Marine Environment, Oceanic Plankton Group, Marine Phototrophic Prokaryotes team, Place Georges Teissier, CS 90074, 29688, Roscoff cedex, France","institution_ids":["https://openalex.org/I4210117160","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Sorbonne Universit\u00e9s, UPMC Univ. Paris 06, UMR 7144, Station Biologique, CS 90074, 29688, Roscoff cedex, France","institution_ids":["https://openalex.org/I2802436875","https://openalex.org/I39804081"]},{"raw_affiliation_string":"MAPP - Procaryotes Phototrophes Marins = MArine Phototrophic Prokaryotes (France)","institution_ids":[]},{"raw_affiliation_string":"AD2M - Adaptation et diversit\u00e9 en milieu marin (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I4210117160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033352043","display_name":"Gwendoline Andres","orcid":null},"institutions":[{"id":"https://openalex.org/I4210117160","display_name":"Adaptation et Diversit\u00e9 en Milieu Marin","ror":"https://ror.org/0293jn610","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210107625","https://openalex.org/I4210117160"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802436875","display_name":"Station Biologique de Roscoff","ror":"https://ror.org/03s0pzj56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210107625"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gwendoline Andres","raw_affiliation_strings":["CNRS, FR 2424, ABiMS Platform, Station Biologique, Place Georges Teissier, CS 90074, 29688, Roscoff cedex, France","SBR - Station biologique de Roscoff [Roscoff] (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","AD2M - Adaptation et diversit\u00e9 en milieu marin (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"CNRS, FR 2424, ABiMS Platform, Station Biologique, Place Georges Teissier, CS 90074, 29688, Roscoff cedex, France","institution_ids":["https://openalex.org/I2802436875","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"SBR - Station biologique de Roscoff [Roscoff] (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I2802436875"]},{"raw_affiliation_string":"AD2M - Adaptation et diversit\u00e9 en milieu marin (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I4210117160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040685674","display_name":"Erwan Corre","orcid":"https://orcid.org/0000-0001-6354-2278"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210117160","display_name":"Adaptation et Diversit\u00e9 en Milieu Marin","ror":"https://ror.org/0293jn610","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210107625","https://openalex.org/I4210117160"]},{"id":"https://openalex.org/I2802436875","display_name":"Station Biologique de Roscoff","ror":"https://ror.org/03s0pzj56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210107625"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Erwan Corre","raw_affiliation_strings":["CNRS, FR 2424, ABiMS Platform, Station Biologique, Place Georges Teissier, CS 90074, 29688, Roscoff cedex, France","AD2M - Adaptation et diversit\u00e9 en milieu marin (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","SBR - Station biologique de Roscoff [Roscoff] (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"CNRS, FR 2424, ABiMS Platform, Station Biologique, Place Georges Teissier, CS 90074, 29688, Roscoff cedex, France","institution_ids":["https://openalex.org/I2802436875","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"AD2M - Adaptation et diversit\u00e9 en milieu marin (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I4210117160"]},{"raw_affiliation_string":"SBR - Station biologique de Roscoff [Roscoff] (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I2802436875"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047531033","display_name":"Laurence Garczarek","orcid":"https://orcid.org/0000-0002-8191-8395"},"institutions":[{"id":"https://openalex.org/I4210117160","display_name":"Adaptation et Diversit\u00e9 en Milieu Marin","ror":"https://ror.org/0293jn610","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210107625","https://openalex.org/I4210117160"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurence Garczarek","raw_affiliation_strings":["CNRS, UMR 7144 Adaptation and Diversity in the Marine Environment, Oceanic Plankton Group, Marine Phototrophic Prokaryotes team, Place Georges Teissier, CS 90074, 29688, Roscoff cedex, France. laurence.garczarek@sb-roscoff.fr","Sorbonne Universit\u00e9s, UPMC Univ. Paris 06, UMR 7144, Station Biologique, CS 90074, 29688, Roscoff cedex, France. laurence.garczarek@sb-roscoff.fr","MAPP - Procaryotes Phototrophes Marins = MArine Phototrophic Prokaryotes (France)","AD2M - Adaptation et diversit\u00e9 en milieu marin (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"CNRS, UMR 7144 Adaptation and Diversity in the Marine Environment, Oceanic Plankton Group, Marine Phototrophic Prokaryotes team, Place Georges Teissier, CS 90074, 29688, Roscoff cedex, France. laurence.garczarek@sb-roscoff.fr","institution_ids":[]},{"raw_affiliation_string":"Sorbonne Universit\u00e9s, UPMC Univ. Paris 06, UMR 7144, Station Biologique, CS 90074, 29688, Roscoff cedex, France. laurence.garczarek@sb-roscoff.fr","institution_ids":[]},{"raw_affiliation_string":"MAPP - Procaryotes Phototrophes Marins = MArine Phototrophic Prokaryotes (France)","institution_ids":[]},{"raw_affiliation_string":"AD2M - Adaptation et diversit\u00e9 en milieu marin (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I4210117160"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5008491141"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210117160"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1745,"currency":"EUR","value_usd":1881},"fwci":0.4448,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.65585141,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"16","issue":"1","first_page":"281","last_page":"281"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.756880521774292},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.6678311228752136},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.6331249475479126},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.6123589873313904},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5236082673072815},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5194065570831299},{"id":"https://openalex.org/keywords/minion","display_name":"Minion","score":0.5169193744659424},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.43994706869125366},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4116392433643341},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.3807126581668854},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30253657698631287},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18266046047210693}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.756880521774292},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.6678311228752136},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.6331249475479126},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.6123589873313904},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5236082673072815},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5194065570831299},{"id":"https://openalex.org/C2779927696","wikidata":"https://www.wikidata.org/wiki/Q6865654","display_name":"Minion","level":5,"score":0.5169193744659424},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.43994706869125366},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4116392433643341},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.3807126581668854},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30253657698631287},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18266046047210693},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D046940","descriptor_name":"Synechococcus","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-015-0705-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0705-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0705-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26335184","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26335184","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-01193001v1","is_oa":true,"landing_page_url":"https://hal.sorbonne-universite.fr/hal-01193001","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2015, 16 pp.281. ⟨10.1186/s12859-015-0705-y⟩","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:4559175","is_oa":true,"landing_page_url":"http://doi.org/10.1186/s12859-015-0705-y","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0705-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0705-y","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0705-y","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.8600000143051147,"display_name":"Life below water"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128263817.pdf","grobid_xml":"https://content.openalex.org/works/W2128263817.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1506603736","https://openalex.org/W1810384854","https://openalex.org/W1970995855","https://openalex.org/W1979006961","https://openalex.org/W1982827785","https://openalex.org/W1988324454","https://openalex.org/W2014286596","https://openalex.org/W2034225042","https://openalex.org/W2036815970","https://openalex.org/W2053217422","https://openalex.org/W2063892792","https://openalex.org/W2077210509","https://openalex.org/W2096634299","https://openalex.org/W2099333915","https://openalex.org/W2103148772","https://openalex.org/W2104910205","https://openalex.org/W2107772251","https://openalex.org/W2108234281","https://openalex.org/W2114795390","https://openalex.org/W2127768708","https://openalex.org/W2128398228","https://openalex.org/W2129744420","https://openalex.org/W2131047697","https://openalex.org/W2140059069","https://openalex.org/W2142027180","https://openalex.org/W2147623421","https://openalex.org/W2151671981","https://openalex.org/W2159625083","https://openalex.org/W2160969485","https://openalex.org/W2165795500","https://openalex.org/W2168200296","https://openalex.org/W2170551349","https://openalex.org/W2171467729","https://openalex.org/W2171531867"],"related_works":["https://openalex.org/W3021840362","https://openalex.org/W3009176350","https://openalex.org/W2952788979","https://openalex.org/W2951195494","https://openalex.org/W2580258113","https://openalex.org/W2951397007","https://openalex.org/W2521004200","https://openalex.org/W3167837387","https://openalex.org/W2949198880","https://openalex.org/W2607669908"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}