{"id":"https://openalex.org/W1834458707","doi":"https://doi.org/10.1186/s12859-015-0696-8","title":"MultiSETTER: web server for multiple RNA structure comparison","display_name":"MultiSETTER: web server for multiple RNA structure comparison","publication_year":2015,"publication_date":"2015-08-11","ids":{"openalex":"https://openalex.org/W1834458707","doi":"https://doi.org/10.1186/s12859-015-0696-8","mag":"1834458707","pmid":"https://pubmed.ncbi.nlm.nih.gov/26264783"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0696-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0696-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0696-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0696-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019968585","display_name":"Petr \u010cech","orcid":"https://orcid.org/0000-0003-4605-6029"},"institutions":[{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Petr \u010cech","raw_affiliation_strings":["Laboratory of Informatics and Chemistry, Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, CZ-166 28, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Informatics and Chemistry, Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, CZ-166 28, Prague, Czech Republic","institution_ids":["https://openalex.org/I9073902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049617942","display_name":"David Hoksza","orcid":"https://orcid.org/0000-0003-4679-0557"},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]},{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"David Hoksza","raw_affiliation_strings":["Department of Software Engineering, Faculty of Mathematics and Physics, Charles University in Prague, Malostransk\u00e9 n\u00e1m. 25, CZ-118 00, Prague, Czech Republic. hoksza@ksi.mff.cuni.cz","Laboratory of Informatics and Chemistry, Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, CZ-166 28, Prague, Czech Republic. hoksza@ksi.mff.cuni.cz"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Faculty of Mathematics and Physics, Charles University in Prague, Malostransk\u00e9 n\u00e1m. 25, CZ-118 00, Prague, Czech Republic. hoksza@ksi.mff.cuni.cz","institution_ids":["https://openalex.org/I21250087"]},{"raw_affiliation_string":"Laboratory of Informatics and Chemistry, Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, CZ-166 28, Prague, Czech Republic. hoksza@ksi.mff.cuni.cz","institution_ids":["https://openalex.org/I9073902"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082393460","display_name":"Daniel Svozil","orcid":"https://orcid.org/0000-0003-2577-5163"},"institutions":[{"id":"https://openalex.org/I9073902","display_name":"University of Chemistry and Technology, Prague","ror":"https://ror.org/05ggn0a85","country_code":"CZ","type":"education","lineage":["https://openalex.org/I9073902"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Daniel Svozil","raw_affiliation_strings":["Laboratory of Informatics and Chemistry, Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, CZ-166 28, Prague, Czech Republic. svozild@vscht.cz"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Informatics and Chemistry, Faculty of Chemical Technology, University of Chemistry and Technology Prague, Technick\u00e1 5, CZ-166 28, Prague, Czech Republic. svozild@vscht.cz","institution_ids":["https://openalex.org/I9073902"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5049617942","https://openalex.org/A5082393460"],"corresponding_institution_ids":["https://openalex.org/I21250087","https://openalex.org/I9073902"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1957,"currency":"EUR","value_usd":2110},"fwci":0.7531,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.71248492,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"16","issue":"1","first_page":"253","last_page":"253"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9606000185012817,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9606000185012817,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.010099999606609344,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.007899999618530273,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7285205125808716},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7251895070075989},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6770544052124023},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.6013686060905457},{"id":"https://openalex.org/keywords/superposition-principle","display_name":"Superposition principle","score":0.5583232045173645},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.47569024562835693},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.4682387411594391},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4583953619003296},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.44981908798217773},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.36929643154144287},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3410531282424927},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.31262776255607605},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27707549929618835},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18528205156326294},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1401166021823883},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.12378939986228943},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1125650405883789},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08718159794807434},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.07560732960700989}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7285205125808716},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7251895070075989},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6770544052124023},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.6013686060905457},{"id":"https://openalex.org/C27753989","wikidata":"https://www.wikidata.org/wiki/Q284885","display_name":"Superposition principle","level":2,"score":0.5583232045173645},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.47569024562835693},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.4682387411594391},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4583953619003296},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.44981908798217773},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.36929643154144287},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3410531282424927},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.31262776255607605},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27707549929618835},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18528205156326294},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1401166021823883},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.12378939986228943},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1125650405883789},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08718159794807434},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.07560732960700989},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-015-0696-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0696-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0696-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26264783","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26264783","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4531852","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4531852","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0696-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0696-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0696-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309755","display_name":"Univerzita Karlova v Praze","ror":"https://ror.org/024d6js02"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1834458707.pdf","grobid_xml":"https://content.openalex.org/works/W1834458707.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W166206240","https://openalex.org/W1971399377","https://openalex.org/W1985118227","https://openalex.org/W1988884185","https://openalex.org/W1996681309","https://openalex.org/W2040220669","https://openalex.org/W2040447892","https://openalex.org/W2049811404","https://openalex.org/W2052841473","https://openalex.org/W2054697783","https://openalex.org/W2060419010","https://openalex.org/W2067800200","https://openalex.org/W2073149987","https://openalex.org/W2074718022","https://openalex.org/W2084961071","https://openalex.org/W2086561953","https://openalex.org/W2087679230","https://openalex.org/W2093189018","https://openalex.org/W2094031081","https://openalex.org/W2097706568","https://openalex.org/W2100630309","https://openalex.org/W2103937512","https://openalex.org/W2106595865","https://openalex.org/W2108230379","https://openalex.org/W2109872885","https://openalex.org/W2116687527","https://openalex.org/W2119916585","https://openalex.org/W2120418017","https://openalex.org/W2122558818","https://openalex.org/W2130350435","https://openalex.org/W2130479394","https://openalex.org/W2133296358","https://openalex.org/W2134874046","https://openalex.org/W2137001143","https://openalex.org/W2142722597","https://openalex.org/W2144366714","https://openalex.org/W2156400868","https://openalex.org/W2166967514","https://openalex.org/W2167040380","https://openalex.org/W2167338363","https://openalex.org/W2170441710","https://openalex.org/W2407551106","https://openalex.org/W2422129218","https://openalex.org/W6717544727"],"related_works":["https://openalex.org/W2029514038","https://openalex.org/W2105364679","https://openalex.org/W1989090710","https://openalex.org/W2168926448","https://openalex.org/W3210186669","https://openalex.org/W2776264363","https://openalex.org/W2055553856","https://openalex.org/W2117699649","https://openalex.org/W2161370818","https://openalex.org/W1801992990"],"abstract_inverted_index":{"BACKGROUND:":[0],"Understanding":[1],"the":[2,58,91,95,103,112,116,127,137,148,166,171,176,191],"architecture":[3],"and":[4,13,17,44,54,101,157,160,204],"function":[5],"of":[6,23,97,115,139,168,194],"RNA":[7,48,99,133,184],"molecules":[8],"requires":[9],"methods":[10,213],"for":[11,47,181],"comparing":[12],"analyzing":[14],"their":[15],"tertiary":[16],"quaternary":[18],"structures.":[19],"While":[20],"structural":[21,203],"superposition":[22,51,149],"short":[24],"RNAs":[25],"is":[26,150,175],"achievable":[27],"in":[28,57,155,197],"a":[29,42,70,84,122,182,217],"reasonable":[30],"time,":[31],"large":[32],"structures":[33,100,134,152],"represent":[34],"much":[35],"bigger":[36],"challenge.":[37],"Therefore,":[38],"we":[39,89,110],"have":[40],"developed":[41,102],"fast":[43],"accurate":[45],"algorithm":[46,93],"pairwise":[49,71],"structure":[50,72,86,185,222],"called":[52],"SETTER":[53,59,92,117],"implemented":[55],"it":[56],"web":[60,118,173],"server.":[61],"However,":[62],"though":[63],"biological":[64],"relationships":[65,206],"can":[66,79],"be":[67,80],"inferred":[68],"by":[69,77,209],"alignment,":[73],"key":[74],"features":[75],"preserved":[76],"evolution":[78],"identified":[81],"only":[82],"from":[83],"multiple":[85,98,183,211],"alignment.":[87,186],"Thus,":[88],"extended":[90],"to":[94,126],"alignment":[96,196,212],"MultiSETTER":[104,128,172,188],"algorithm.":[105,129],"RESULTS:":[106],"In":[107],"this":[108],"paper,":[109],"present":[111],"updated":[113],"version":[114],"server":[119,131,174,189],"that":[120],"implements":[121],"user":[123],"friendly":[124],"interface":[125],"The":[130,187],"accepts":[132],"either":[135,215],"as":[136,143],"list":[138],"PDB":[140,145],"IDs":[141],"or":[142,219],"user-defined":[144],"files.":[146],"After":[147],"computed,":[151],"are":[153,162],"visualized":[154],"3D":[156,198],"several":[158],"reports":[159],"statistics":[161],"generated.":[163],"CONCLUSION:":[164],"To":[165],"best":[167],"our":[169],"knowledge,":[170],"first":[177],"publicly":[178],"available":[179],"tool":[180],"offers":[190],"visual":[192],"inspection":[193],"an":[195],"space":[199],"which":[200],"may":[201],"reveal":[202],"functional":[205],"not":[207],"captured":[208],"other":[210],"based":[214],"on":[216,220],"sequence":[218],"secondary":[221],"motifs.":[223]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}
