{"id":"https://openalex.org/W1793987388","doi":"https://doi.org/10.1186/s12859-015-0663-4","title":"Sealer: a scalable gap-closing application for finishing draft genomes","display_name":"Sealer: a scalable gap-closing application for finishing draft genomes","publication_year":2015,"publication_date":"2015-07-24","ids":{"openalex":"https://openalex.org/W1793987388","doi":"https://doi.org/10.1186/s12859-015-0663-4","mag":"1793987388","pmid":"https://pubmed.ncbi.nlm.nih.gov/26209068"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0663-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0663-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0663-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0663-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001748367","display_name":"Daniel Paulino","orcid":null},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210133112"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Daniel Paulino","raw_affiliation_strings":["Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada. dpaulino@bcgsc.ca","Canada's Michael Smith Genome Sciences Centre; British Columbia Cancer Agency; Vancouver Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada. dpaulino@bcgsc.ca","institution_ids":["https://openalex.org/I4210133112"]},{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre; British Columbia Cancer Agency; Vancouver Canada","institution_ids":["https://openalex.org/I1289530486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102829017","display_name":"Ren\u00e9 L. Warren","orcid":"https://orcid.org/0000-0002-9890-2293"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210133112"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ren\u00e9 L. Warren","raw_affiliation_strings":["Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada. rwarren@bcgsc.ca","Canada's Michael Smith Genome Sciences Centre; British Columbia Cancer Agency; Vancouver Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada. rwarren@bcgsc.ca","institution_ids":["https://openalex.org/I4210133112"]},{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre; British Columbia Cancer Agency; Vancouver Canada","institution_ids":["https://openalex.org/I1289530486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077505259","display_name":"Benjamin P. Vandervalk","orcid":"https://orcid.org/0000-0002-3082-3476"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210133112"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Benjamin P. Vandervalk","raw_affiliation_strings":["Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada. benv@bcgsc.ca","Canada's Michael Smith Genome Sciences Centre; British Columbia Cancer Agency; Vancouver Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada. benv@bcgsc.ca","institution_ids":["https://openalex.org/I4210133112"]},{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre; British Columbia Cancer Agency; Vancouver Canada","institution_ids":["https://openalex.org/I1289530486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075329098","display_name":"Anthony Raymond","orcid":null},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210133112"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anthony Raymond","raw_affiliation_strings":["Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada. traymond@bcgsc.ca","Canada's Michael Smith Genome Sciences Centre; British Columbia Cancer Agency; Vancouver Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada. traymond@bcgsc.ca","institution_ids":["https://openalex.org/I4210133112"]},{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre; British Columbia Cancer Agency; Vancouver Canada","institution_ids":["https://openalex.org/I1289530486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028264773","display_name":"Shaun D. Jackman","orcid":"https://orcid.org/0000-0002-9275-5966"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210133112"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Shaun D. Jackman","raw_affiliation_strings":["Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada. sjackman@bcgsc.ca","Canada's Michael Smith Genome Sciences Centre; British Columbia Cancer Agency; Vancouver Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada. sjackman@bcgsc.ca","institution_ids":["https://openalex.org/I4210133112"]},{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre; British Columbia Cancer Agency; Vancouver Canada","institution_ids":["https://openalex.org/I1289530486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017539699","display_name":"\u0130nan\u00e7 Birol","orcid":"https://orcid.org/0000-0003-0950-7839"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210133112","display_name":"Canada's Michael Smith Genome Sciences Centre","ror":"https://ror.org/0333j0897","country_code":"CA","type":"other","lineage":["https://openalex.org/I4210133112"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Inan\u00e7 Birol","raw_affiliation_strings":["Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada. ibirol@bcgsc.ca","Department of Medical Genetics, University of British Columbia, Vancouver, BC, V6H 3N1, Canada. ibirol@bcgsc.ca","Canada\u2019s Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, Canada;","Department of Medical Genetics, University of British Columbia, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Canada's Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, BC, V5Z 4S6, Canada. ibirol@bcgsc.ca","institution_ids":["https://openalex.org/I4210133112"]},{"raw_affiliation_string":"Department of Medical Genetics, University of British Columbia, Vancouver, BC, V6H 3N1, Canada. ibirol@bcgsc.ca","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Canada\u2019s Michael Smith Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, Canada;","institution_ids":["https://openalex.org/I4210133112"]},{"raw_affiliation_string":"Department of Medical Genetics, University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5017539699"],"corresponding_institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210133112"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":6.3481,"has_fulltext":true,"cited_by_count":156,"citation_normalized_percentile":{"value":0.97353119,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"16","issue":"1","first_page":"230","last_page":"230"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8784000277519226,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8784000277519226,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.049400001764297485,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.016200000420212746,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/closing","display_name":"Closing (real estate)","score":0.8952242732048035},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5551566481590271},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4692867696285248},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4596841037273407},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4495101571083069},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3553278148174286},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33296945691108704},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19743114709854126},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12461507320404053},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.12397250533103943},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07550284266471863}],"concepts":[{"id":"https://openalex.org/C2778775528","wikidata":"https://www.wikidata.org/wiki/Q5135432","display_name":"Closing (real estate)","level":2,"score":0.8952242732048035},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5551566481590271},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4692867696285248},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4596841037273407},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4495101571083069},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3553278148174286},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33296945691108704},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19743114709854126},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12461507320404053},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.12397250533103943},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07550284266471863},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D028201","descriptor_name":"Pinaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D028201","descriptor_name":"Pinaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D028201","descriptor_name":"Pinaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-015-0663-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0663-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0663-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26209068","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26209068","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3490022","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4515008","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0663-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0663-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0663-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G1708593072","display_name":null,"funder_award_id":"R01HG007182","funder_id":"https://openalex.org/F4320319973","funder_display_name":"Genome British Columbia"},{"id":"https://openalex.org/G3761971259","display_name":null,"funder_award_id":"R01HG007182","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G7026723909","display_name":null,"funder_award_id":"R01HG007182","funder_id":"https://openalex.org/F4320310787","funder_display_name":"Genome Canada"},{"id":"https://openalex.org/G8408460853","display_name":"De Novo Assembly Tools: Research with Unbiased Engines - Renewal (DNA-TRUER)","funder_award_id":"5r01hg007182-08","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320319973","display_name":"Genome British Columbia","ror":"https://ror.org/03gne5057"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1793987388.pdf","grobid_xml":"https://content.openalex.org/works/W1793987388.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W274934192","https://openalex.org/W1255676896","https://openalex.org/W1767772592","https://openalex.org/W1966822396","https://openalex.org/W1971403296","https://openalex.org/W1978173716","https://openalex.org/W1994568187","https://openalex.org/W2014286596","https://openalex.org/W2021630037","https://openalex.org/W2039408705","https://openalex.org/W2049656505","https://openalex.org/W2065783627","https://openalex.org/W2079089319","https://openalex.org/W2105656684","https://openalex.org/W2107772251","https://openalex.org/W2112491476","https://openalex.org/W2129933858","https://openalex.org/W2132546867","https://openalex.org/W2143008582","https://openalex.org/W2157460239","https://openalex.org/W2165795500","https://openalex.org/W2171467729","https://openalex.org/W2171777347","https://openalex.org/W2885727518","https://openalex.org/W6608097372"],"related_works":["https://openalex.org/W2116422677","https://openalex.org/W2517007886","https://openalex.org/W2383994331","https://openalex.org/W1522019333","https://openalex.org/W278047738","https://openalex.org/W2076369646","https://openalex.org/W2373884197","https://openalex.org/W4244817184","https://openalex.org/W2961923709","https://openalex.org/W2516969888"],"abstract_inverted_index":{"BACKGROUND:":[0],"While":[1],"next-generation":[2],"sequencing":[3,7],"technologies":[4],"have":[5,210],"made":[6],"genomes":[8,215,223,227],"faster":[9],"and":[10,35,133,141,151,228],"more":[11],"affordable,":[12],"deciphering":[13],"the":[14,74,167,184,217],"complete":[15],"genome":[16,42],"sequence":[17,31,48],"of":[18,57,63,135,169,189,202,219],"an":[19,178],"organism":[20],"remains":[21],"a":[22,103,156,190],"significant":[23],"bioinformatics":[24],"challenge,":[25],"especially":[26],"for":[27,83,213,233],"large":[28,204,225],"genomes.":[29,97,205],"Low":[30],"coverage,":[32],"repetitive":[33],"elements":[34],"short":[36],"read":[37],"length":[38],"make":[39],"de":[40,114,191],"novo":[41],"assembly":[43,110],"difficult,":[44],"often":[45],"resulting":[46],"in":[47,73,137,148,172,197],"and/or":[49],"fragment":[50],"\"gaps\"":[51],"-":[52,155],"uncharacterized":[53],"nucleotide":[54],"(N)":[55],"stretches":[56],"unknown":[58],"or":[59],"estimated":[60],"lengths.":[61],"Some":[62],"these":[64],"gaps":[65,108,136,196],"can":[66],"be":[67],"closed":[68],"by":[69,112,118],"re-processing":[70],"latent":[71],"information":[72],"raw":[75],"reads.":[76],"Even":[77],"though":[78],"there":[79],"are":[80],"several":[81],"tools":[82,165],"closing":[84],"gaps,":[85],"they":[86],"do":[87],"not":[88,160],"easily":[89],"scale":[90],"up":[91],"to":[92,106,129,194,209,224],"processing":[93],"billion":[94],"base":[95],"pair":[96],"RESULTS:":[98],"Here":[99],"we":[100],"describe":[101],"Sealer,":[102],"tool":[104],"designed":[105],"close":[107,131,195],"within":[109],"scaffolds":[111],"navigating":[113],"Bruijn":[115,192],"graphs":[116],"represented":[117],"space-efficient":[119],"Bloom":[120,186],"filter":[121,187],"data":[122,170],"structures.":[123],"We":[124,206],"demonstrate":[125],"how":[126],"it":[127],"scales":[128],"successfully":[130],"50.8%":[132],"13.8%":[134],"human":[138],"(3":[139],"Gbp)":[140,145],"white":[142],"spruce":[143],"(20":[144],"draft":[146,198],"assemblies":[147],"under":[149],"30":[150],"27":[152],"h,":[153],"respectively":[154],"feat":[157],"that":[158,182,201],"is":[159,177,231],"possible":[161],"with":[162,166],"other":[163],"leading":[164],"breadth":[168],"used":[171],"our":[173],"study.":[174],"CONCLUSION:":[175],"Sealer":[176,208,230],"automated":[179],"finishing":[180,214],"application":[181],"uses":[183],"succinct":[185],"representation":[188],"graph":[193],"assemblies,":[199],"including":[200],"very":[203],"expect":[207],"broad":[211],"utility":[212],"across":[216],"tree":[218],"life,":[220],"from":[221],"bacterial":[222],"plant":[226],"beyond.":[229],"available":[232],"download":[234],"at":[235],"https://github.com/bcgsc/abyss/tree/sealer-release.":[236]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":22},{"year":2021,"cited_by_count":27},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":22},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":5}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
