{"id":"https://openalex.org/W1837722206","doi":"https://doi.org/10.1186/s12859-015-0648-3","title":"Capturing coevolutionary signals inrepeat proteins","display_name":"Capturing coevolutionary signals inrepeat proteins","publication_year":2015,"publication_date":"2015-07-01","ids":{"openalex":"https://openalex.org/W1837722206","doi":"https://doi.org/10.1186/s12859-015-0648-3","mag":"1837722206","pmid":"https://pubmed.ncbi.nlm.nih.gov/26134293"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0648-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0648-3","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-015-0648-3.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-015-0648-3.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054139274","display_name":"Roc\u00edo Espada","orcid":"https://orcid.org/0000-0003-3829-473X"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I24354313","display_name":"Universidad de Buenos Aires","ror":"https://ror.org/0081fs513","country_code":"AR","type":"education","lineage":["https://openalex.org/I24354313"]},{"id":"https://openalex.org/I53241121","display_name":"Fundaci\u00f3n Ciencias Exactas y Naturales","ror":"https://ror.org/05rxmkq09","country_code":"AR","type":"nonprofit","lineage":["https://openalex.org/I53241121"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Roc\u00edo Espada","raw_affiliation_strings":["Departamento de F\u00edsica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina","Protein Physiology Lab, Dep de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, UBA-CONICET-IQUIBICEN, Buenos Aires, Argentina","Departamento de F\u00edsica (Argentina)","IQUIBICEN - Instituto de Qu\u00edmica Biol\u00f3gica Ciencias Exactas y Naturales (Ciudad Universitaria, Pabell\u00f3n II 4\u00ba Piso CP: C1428EGA. - Ciudad Aut\u00f3noma de Buenos Aires - Argentina)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de F\u00edsica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I53241121","https://openalex.org/I24354313"]},{"raw_affiliation_string":"Protein Physiology Lab, Dep de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, UBA-CONICET-IQUIBICEN, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I53241121","https://openalex.org/I151201029"]},{"raw_affiliation_string":"Departamento de F\u00edsica (Argentina)","institution_ids":[]},{"raw_affiliation_string":"IQUIBICEN - Instituto de Qu\u00edmica Biol\u00f3gica Ciencias Exactas y Naturales (Ciudad Universitaria, Pabell\u00f3n II 4\u00ba Piso CP: C1428EGA. - Ciudad Aut\u00f3noma de Buenos Aires - Argentina)","institution_ids":["https://openalex.org/I53241121"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019958241","display_name":"R. Gonzalo Parra","orcid":"https://orcid.org/0000-0003-2446-016X"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I53241121","display_name":"Fundaci\u00f3n Ciencias Exactas y Naturales","ror":"https://ror.org/05rxmkq09","country_code":"AR","type":"nonprofit","lineage":["https://openalex.org/I53241121"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"R Gonzalo Parra","raw_affiliation_strings":["Protein Physiology Lab, Dep de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, UBA-CONICET-IQUIBICEN, Buenos Aires, Argentina","IQUIBICEN - Instituto de Qu\u00edmica Biol\u00f3gica Ciencias Exactas y Naturales (Ciudad Universitaria, Pabell\u00f3n II 4\u00ba Piso CP: C1428EGA. - Ciudad Aut\u00f3noma de Buenos Aires - Argentina)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Protein Physiology Lab, Dep de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, UBA-CONICET-IQUIBICEN, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I53241121","https://openalex.org/I151201029"]},{"raw_affiliation_string":"IQUIBICEN - Instituto de Qu\u00edmica Biol\u00f3gica Ciencias Exactas y Naturales (Ciudad Universitaria, Pabell\u00f3n II 4\u00ba Piso CP: C1428EGA. - Ciudad Aut\u00f3noma de Buenos Aires - Argentina)","institution_ids":["https://openalex.org/I53241121"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064369206","display_name":"Thierry Mora","orcid":"https://orcid.org/0000-0002-5456-9361"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I29607241","display_name":"\u00c9cole Normale Sup\u00e9rieure - PSL","ror":"https://ror.org/05a0dhs15","country_code":"FR","type":"other","lineage":["https://openalex.org/I2746051580","https://openalex.org/I29607241"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210103330","display_name":"\u00c9cole Normale Sup\u00e9rieure","ror":"https://ror.org/01dp7jr64","country_code":"BI","type":"education","lineage":["https://openalex.org/I4210103330"]},{"id":"https://openalex.org/I4210129651","display_name":"Laboratoire de Physique de l'Ecole Normale Sup\u00e9rieure","ror":"https://ror.org/03a26mh11","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I2800004676","https://openalex.org/I29607241","https://openalex.org/I39804081","https://openalex.org/I4210129651"]}],"countries":["BI","FR"],"is_corresponding":false,"raw_author_name":"Thierry Mora","raw_affiliation_strings":["Laboratoire de physique statistique, CNRS, UPMC and \u00c9cole normale sup\u00e9rieure, 24 rue Lhomond, Paris, 75005, France","LPS - Laboratoire de Physique Statistique de l'ENS (24 rue Lhomond 75231 PARIS Cedex 05 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de physique statistique, CNRS, UPMC and \u00c9cole normale sup\u00e9rieure, 24 rue Lhomond, Paris, 75005, France","institution_ids":["https://openalex.org/I4210103330","https://openalex.org/I1294671590","https://openalex.org/I29607241","https://openalex.org/I39804081","https://openalex.org/I4210129651"]},{"raw_affiliation_string":"LPS - Laboratoire de Physique Statistique de l'ENS (24 rue Lhomond 75231 PARIS Cedex 05 - France)","institution_ids":["https://openalex.org/I4210129651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016850339","display_name":"Aleksandra M. Walczak","orcid":"https://orcid.org/0000-0002-2686-5702"},"institutions":[{"id":"https://openalex.org/I4210129651","display_name":"Laboratoire de Physique de l'Ecole Normale Sup\u00e9rieure","ror":"https://ror.org/03a26mh11","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I2746051580","https://openalex.org/I2746051580","https://openalex.org/I2800004676","https://openalex.org/I29607241","https://openalex.org/I39804081","https://openalex.org/I4210129651"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Aleksandra M Walczak","raw_affiliation_strings":[", 24 rue Lhomond, Paris, 75005, France","LPS - Laboratoire de Physique Statistique de l'ENS (24 rue Lhomond 75231 PARIS Cedex 05 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":", 24 rue Lhomond, Paris, 75005, France","institution_ids":["https://openalex.org/I4210129651"]},{"raw_affiliation_string":"LPS - Laboratoire de Physique Statistique de l'ENS (24 rue Lhomond 75231 PARIS Cedex 05 - France)","institution_ids":["https://openalex.org/I4210129651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026249041","display_name":"Diego U. Ferreiro","orcid":"https://orcid.org/0000-0002-7869-4247"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I53241121","display_name":"Fundaci\u00f3n Ciencias Exactas y Naturales","ror":"https://ror.org/05rxmkq09","country_code":"AR","type":"nonprofit","lineage":["https://openalex.org/I53241121"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Diego U Ferreiro","raw_affiliation_strings":["Protein Physiology Lab, Dep de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, UBA-CONICET-IQUIBICEN, Buenos Aires, Argentina","IQUIBICEN - Instituto de Qu\u00edmica Biol\u00f3gica Ciencias Exactas y Naturales (Ciudad Universitaria, Pabell\u00f3n II 4\u00ba Piso CP: C1428EGA. - Ciudad Aut\u00f3noma de Buenos Aires - Argentina)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Protein Physiology Lab, Dep de Qu\u00edmica Biol\u00f3gica, Facultad de Ciencias Exactas y Naturales, UBA-CONICET-IQUIBICEN, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I53241121","https://openalex.org/I151201029"]},{"raw_affiliation_string":"IQUIBICEN - Instituto de Qu\u00edmica Biol\u00f3gica Ciencias Exactas y Naturales (Ciudad Universitaria, Pabell\u00f3n II 4\u00ba Piso CP: C1428EGA. - Ciudad Aut\u00f3noma de Buenos Aires - Argentina)","institution_ids":["https://openalex.org/I53241121"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.8617,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.90977241,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"16","issue":"1","first_page":"207","last_page":"207"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7501999735832214,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7501999735832214,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.09380000084638596,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.02630000002682209,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6429640054702759},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5557067394256592},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5267103314399719},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.44221046566963196},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.4321581721305847},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.42451590299606323},{"id":"https://openalex.org/keywords/protein-evolution","display_name":"Protein evolution","score":0.41951417922973633},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3251182436943054},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27798205614089966},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14380809664726257}],"concepts":[{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6429640054702759},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5557067394256592},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5267103314399719},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.44221046566963196},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.4321581721305847},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.42451590299606323},{"id":"https://openalex.org/C2992240565","wikidata":"https://www.wikidata.org/wiki/Q856529","display_name":"Protein evolution","level":3,"score":0.41951417922973633},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3251182436943054},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27798205614089966},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14380809664726257},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055503","descriptor_name":"Protein Multimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055503","descriptor_name":"Protein Multimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055503","descriptor_name":"Protein Multimerization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-015-0648-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0648-3","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-015-0648-3.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26134293","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26134293","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-01211646v1","is_oa":true,"landing_page_url":"https://hal.sorbonne-universite.fr/hal-01211646","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2015, pp.207. &#x27E8;10.1186/s12859-015-0648-3&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:americanae.aecid.es:3124182","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=3124182","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:CONICET Digital (CONICET)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3455382","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4489039","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:ri.conicet.gov.ar:11336/48743","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/48743","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:CONICET Digital (CONICET)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0648-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0648-3","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-015-0648-3.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7378882120","display_name":null,"funder_award_id":"CONICET","funder_id":"https://openalex.org/F4320334832","funder_display_name":"Agencia Nacional de Promoci\u00f3n Cient\u00edfica y Tecnol\u00f3gica"}],"funders":[{"id":"https://openalex.org/F4320321594","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59"},{"id":"https://openalex.org/F4320334832","display_name":"Agencia Nacional de Promoci\u00f3n Cient\u00edfica y Tecnol\u00f3gica","ror":"https://ror.org/03stxzb56"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1837722206.pdf","grobid_xml":"https://content.openalex.org/works/W1837722206.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W56901349","https://openalex.org/W66352343","https://openalex.org/W1965839094","https://openalex.org/W1966816931","https://openalex.org/W1967292572","https://openalex.org/W1970999032","https://openalex.org/W1972464683","https://openalex.org/W1979762151","https://openalex.org/W1991194470","https://openalex.org/W1992827895","https://openalex.org/W2008238932","https://openalex.org/W2008545402","https://openalex.org/W2016685368","https://openalex.org/W2021769301","https://openalex.org/W2051545676","https://openalex.org/W2054681398","https://openalex.org/W2055118532","https://openalex.org/W2055382743","https://openalex.org/W2061042699","https://openalex.org/W2065127848","https://openalex.org/W2085036090","https://openalex.org/W2085211779","https://openalex.org/W2091142825","https://openalex.org/W2130479394","https://openalex.org/W2135621733","https://openalex.org/W2136799255","https://openalex.org/W2137566700","https://openalex.org/W2139754669","https://openalex.org/W2141885858","https://openalex.org/W2143370123","https://openalex.org/W2147526198","https://openalex.org/W2147683236","https://openalex.org/W2148779882","https://openalex.org/W2149243426","https://openalex.org/W2149647521","https://openalex.org/W2156247618","https://openalex.org/W2158476854","https://openalex.org/W2164148522","https://openalex.org/W2166701319","https://openalex.org/W2169478909","https://openalex.org/W2170869273","https://openalex.org/W2395745621","https://openalex.org/W3101056534","https://openalex.org/W4210400672","https://openalex.org/W4248016841"],"related_works":["https://openalex.org/W2260493136","https://openalex.org/W2113188411","https://openalex.org/W4210423528","https://openalex.org/W2976965029","https://openalex.org/W2939859775","https://openalex.org/W2055827177","https://openalex.org/W2023600921","https://openalex.org/W2382178265","https://openalex.org/W2072666835","https://openalex.org/W4248706500"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,155],"analysis":[2,45],"of":[3,5,17,27,56,69,86,128,142,173],"correlations":[4,80],"amino":[6],"acid":[7],"occurrences":[8],"in":[9,35,77,93,149,177],"globular":[10],"domains":[11,58],"has":[12],"led":[13],"to":[14,32,135,145,161,184],"the":[15,28,54,65,78,83,87,122,126,129,136,139,163,171,174],"development":[16],"statistical":[18],"tools":[19],"that":[20,30,64,187],"can":[21,106,158,181],"identify":[22],"native":[23,104],"contacts":[24,105],"-":[25,49],"portions":[26],"chains":[29],"come":[31],"close":[33],"distance":[34],"folded":[36],"structural":[37],"ensembles.":[38],"Here":[39],"we":[40],"introduce":[41],"a":[42,74],"direct":[43],"coupling":[44],"for":[46,52,90,113],"repeat":[47,70,151],"proteins":[48],"natural":[50],"systems":[51],"which":[53,102],"identification":[55],"folding":[57],"remains":[59],"challenging.":[60],"RESULTS:":[61],"We":[62,124],"show":[63],"inherent":[66],"translational":[67],"symmetry":[68],"protein":[71,152],"sequences":[72,143],"introduces":[73],"strong":[75],"bias":[76,92],"pair":[79],"at":[81,165],"precisely":[82],"length":[84],"scale":[85],"repeat-unit.":[88],"Equalizing":[89],"this":[91],"an":[94],"objective":[95],"way":[96],"reveals":[97],"true":[98],"co-evolutionary":[99],"signals":[100],"from":[101],"local":[103],"be":[107,159,182],"identified.":[108],"Importantly,":[109],"parameter":[110],"values":[111],"obtained":[112],"all":[114],"other":[115],"interactions":[116,164],"are":[117],"not":[118],"significantly":[119],"affected":[120],"by":[121],"equalization.":[123],"quantify":[125],"robustness":[127],"procedure":[130,157],"and":[131,180],"assign":[132],"confidence":[133],"levels":[134],"interactions,":[137],"identifying":[138,170],"minimum":[140],"number":[141],"needed":[144],"extract":[146],"evolutionary":[147],"information":[148],"several":[150],"families.":[153],"CONCLUSIONS:":[154],"overall":[156],"used":[160],"reconstruct":[162],"distances":[166],"larger":[167],"than":[168],"repeat-pairs,":[169],"characteristics":[172],"strongest":[175],"couplings":[176],"each":[178],"family,":[179],"applied":[183],"any":[185],"system":[186],"appears":[188],"translationally":[189],"symmetric.":[190]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":3}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
