{"id":"https://openalex.org/W1882572081","doi":"https://doi.org/10.1186/s12859-015-0644-7","title":"SuRankCo: supervised ranking of contigs in de novo assemblies","display_name":"SuRankCo: supervised ranking of contigs in de novo assemblies","publication_year":2015,"publication_date":"2015-07-29","ids":{"openalex":"https://openalex.org/W1882572081","doi":"https://doi.org/10.1186/s12859-015-0644-7","mag":"1882572081","pmid":"https://pubmed.ncbi.nlm.nih.gov/26224355"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0644-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0644-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0644-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0644-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048890564","display_name":"Mathias Kuhring","orcid":"https://orcid.org/0000-0002-3287-0313"},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mathias Kuhring","raw_affiliation_strings":["Central Administration 4 (IT), Robert Koch Institute, Berlin, Germany. KuhringK@rki.de","Centre for Biological Threats and Special Pathogens (ZBS 1), Robert Koch Institute, Berlin, Germany. KuhringK@rki.de","Research Group Bioinformatics (NG4), Robert Koch Institute, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central Administration 4 (IT), Robert Koch Institute, Berlin, Germany. KuhringK@rki.de","institution_ids":["https://openalex.org/I24359323"]},{"raw_affiliation_string":"Centre for Biological Threats and Special Pathogens (ZBS 1), Robert Koch Institute, Berlin, Germany. KuhringK@rki.de","institution_ids":["https://openalex.org/I24359323"]},{"raw_affiliation_string":"Research Group Bioinformatics (NG4), Robert Koch Institute, Berlin, Germany","institution_ids":["https://openalex.org/I24359323"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012588229","display_name":"Piotr Wojciech D\u0105browski","orcid":"https://orcid.org/0000-0003-4893-805X"},"institutions":[{"id":"https://openalex.org/I1293487690","display_name":"Ministry of Education","ror":"https://ror.org/04d0xx942","country_code":"BR","type":"government","lineage":["https://openalex.org/I1293487690","https://openalex.org/I2801200668"]},{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["BR","DE"],"is_corresponding":false,"raw_author_name":"Piotr Wojtek Dabrowski","raw_affiliation_strings":["CAPES Foundation, Ministry of Education of Brazil, Bras\u00edlia - DF, 70040-020, Brazil. DabrowskiW@rki.de","Research Group Bioinformatics (NG4), Robert Koch Institute, Berlin, Germany. DabrowskiW@rki.de","Central Administration 4 (IT), Robert Koch Institute, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CAPES Foundation, Ministry of Education of Brazil, Bras\u00edlia - DF, 70040-020, Brazil. DabrowskiW@rki.de","institution_ids":["https://openalex.org/I1293487690"]},{"raw_affiliation_string":"Research Group Bioinformatics (NG4), Robert Koch Institute, Berlin, Germany. DabrowskiW@rki.de","institution_ids":["https://openalex.org/I24359323"]},{"raw_affiliation_string":"Central Administration 4 (IT), Robert Koch Institute, Berlin, Germany","institution_ids":["https://openalex.org/I24359323"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030335109","display_name":"Vitor C. Piro","orcid":"https://orcid.org/0000-0003-1330-1286"},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Vitor C. Piro","raw_affiliation_strings":["Centre for Biological Threats and Special Pathogens (ZBS 1), Robert Koch Institute, Berlin, Germany. PiroV@rki.de","Research Group Bioinformatics (NG4), Robert Koch Institute, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Biological Threats and Special Pathogens (ZBS 1), Robert Koch Institute, Berlin, Germany. PiroV@rki.de","institution_ids":["https://openalex.org/I24359323"]},{"raw_affiliation_string":"Research Group Bioinformatics (NG4), Robert Koch Institute, Berlin, Germany","institution_ids":["https://openalex.org/I24359323"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007303691","display_name":"Andreas Nitsche","orcid":"https://orcid.org/0000-0001-8185-3176"},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Nitsche","raw_affiliation_strings":["Research Group Bioinformatics (NG4), Robert Koch Institute, Berlin, Germany. NitscheA@rki.de","Centre for Biological Threats and Special Pathogens (ZBS 1), Robert Koch Institute, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Group Bioinformatics (NG4), Robert Koch Institute, Berlin, Germany. NitscheA@rki.de","institution_ids":["https://openalex.org/I24359323"]},{"raw_affiliation_string":"Centre for Biological Threats and Special Pathogens (ZBS 1), Robert Koch Institute, Berlin, Germany","institution_ids":["https://openalex.org/I24359323"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005996110","display_name":"Bernhard Y. Renard","orcid":"https://orcid.org/0000-0003-4589-9809"},"institutions":[{"id":"https://openalex.org/I24359323","display_name":"Robert Koch Institute","ror":"https://ror.org/01k5qnb77","country_code":"DE","type":"government","lineage":["https://openalex.org/I24359323"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Bernhard Y. Renard","raw_affiliation_strings":["Research Group Bioinformatics (NG4), Robert Koch Institute, Berlin, Germany. RenardB@rki.de","Research Group Bioinformatics (NG4), Robert Koch Institute, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Group Bioinformatics (NG4), Robert Koch Institute, Berlin, Germany. RenardB@rki.de","institution_ids":["https://openalex.org/I24359323"]},{"raw_affiliation_string":"Research Group Bioinformatics (NG4), Robert Koch Institute, Berlin, Germany","institution_ids":["https://openalex.org/I24359323"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5005996110"],"corresponding_institution_ids":["https://openalex.org/I24359323"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7022,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.66900831,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"16","issue":"1","first_page":"240","last_page":"240"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.5663999915122986,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.5663999915122986,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11159","display_name":"Manufacturing Process and Optimization","score":0.05429999902844429,"subfield":{"id":"https://openalex.org/subfields/2209","display_name":"Industrial and Manufacturing Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.03099999949336052,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.8622387647628784},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.7229520082473755},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.7013087272644043},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6230319738388062},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5641425848007202},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.5539992451667786},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5208797454833984},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4727688133716583},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.36960968375205994},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35886549949645996},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32298731803894043},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21739575266838074},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13233155012130737}],"concepts":[{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.8622387647628784},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.7229520082473755},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.7013087272644043},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6230319738388062},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5641425848007202},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.5539992451667786},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5208797454833984},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4727688133716583},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.36960968375205994},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35886549949645996},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32298731803894043},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21739575266838074},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13233155012130737},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020451","descriptor_name":"Contig Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-015-0644-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0644-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0644-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26224355","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26224355","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:RKI.de:3921","is_oa":false,"landing_page_url":"http://edoc.rki.de/docviews/abstract.php?id=3921","pdf_url":null,"source":{"id":"https://openalex.org/S4306400512","display_name":"Publication server of the Robert Koch Institute (Robert Kock Institute)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I24359323","host_organization_name":"Robert Koch Institute","host_organization_lineage":["https://openalex.org/I24359323"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:europepmc.org:3495336","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4520199","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0644-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0644-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0644-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3251340762","display_name":null,"funder_award_id":"BEX 13472/13-5","funder_id":"https://openalex.org/F4320336557","funder_display_name":"Ci\u00eancia sem Fronteiras"},{"id":"https://openalex.org/G4936574122","display_name":null,"funder_award_id":"BEX 13472/13-5","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"},{"id":"https://openalex.org/G7640177989","display_name":null,"funder_award_id":"IIA5-2512-FSB-725","funder_id":"https://openalex.org/F4320321721","funder_display_name":"Bundesministerium f\u00fcr Gesundheit"}],"funders":[{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320321721","display_name":"Bundesministerium f\u00fcr Gesundheit","ror":"https://ror.org/05vp4ka74"},{"id":"https://openalex.org/F4320336557","display_name":"Ci\u00eancia sem Fronteiras","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1882572081.pdf","grobid_xml":"https://content.openalex.org/works/W1882572081.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W45443282","https://openalex.org/W1969149930","https://openalex.org/W2033083661","https://openalex.org/W2044540291","https://openalex.org/W2098531465","https://openalex.org/W2100896078","https://openalex.org/W2102532874","https://openalex.org/W2104046507","https://openalex.org/W2104775949","https://openalex.org/W2107772251","https://openalex.org/W2111829451","https://openalex.org/W2112439337","https://openalex.org/W2112749286","https://openalex.org/W2114765236","https://openalex.org/W2118722022","https://openalex.org/W2127768708","https://openalex.org/W2129933858","https://openalex.org/W2131186249","https://openalex.org/W2133956160","https://openalex.org/W2134153749","https://openalex.org/W2136145671","https://openalex.org/W2159428741","https://openalex.org/W2160969485","https://openalex.org/W2911964244"],"related_works":["https://openalex.org/W4238897586","https://openalex.org/W435179959","https://openalex.org/W2619091065","https://openalex.org/W2059640416","https://openalex.org/W1490753184","https://openalex.org/W2284465472","https://openalex.org/W2291782699","https://openalex.org/W1993948687","https://openalex.org/W2011676020","https://openalex.org/W2000169967"],"abstract_inverted_index":{"BACKGROUND:":[0],"Evaluating":[1],"the":[2,71,114,121],"quality":[3,44,64,127],"and":[4,11,28,68,103,105,124,129,135],"reliability":[5,115],"of":[6,12,46,73,116],"a":[7,21,42,58,81],"de":[8,117],"novo":[9,118],"assembly":[10,38],"single":[13],"contigs":[14,47,67,74],"in":[15,90],"particular":[16],"is":[17,24,80],"challenging":[18],"since":[19],"commonly":[20],"ground":[22,98],"truth":[23,99],"not":[25],"readily":[26],"available":[27,35],"numerous":[29],"factors":[30],"may":[31],"influence":[32],"results.":[33],"Currently":[34],"procedures":[36],"provide":[37],"scores":[39,65],"but":[40],"lack":[41],"comparative":[43],"ranking":[45,72,130],"within":[48,75],"an":[49,76],"assembly.":[50,77],"RESULTS:":[51],"We":[52],"present":[53],"SuRankCo,":[54],"which":[55,85],"relies":[56],"on":[57,94,120],"machine":[59],"learning":[60],"approach":[61],"to":[62,69,108,132],"predict":[63],"for":[66],"enable":[70],"The":[78],"result":[79],"sorted":[82],"contig":[83,88,122],"set":[84],"allows":[86,126],"selective":[87],"usage":[89],"downstream":[91,134],"analysis.":[92],"Benchmarking":[93],"datasets":[95],"with":[96],"known":[97],"shows":[100],"promising":[101],"sensitivity":[102],"specificity":[104],"favorable":[106],"comparison":[107],"existing":[109],"methodology.":[110],"CONCLUSIONS:":[111],"SuRankCo":[112],"analyzes":[113],"assemblies":[119],"level":[123],"thereby":[125],"control":[128],"prior":[131],"further":[133],"validation":[136],"experiments.":[137]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
