{"id":"https://openalex.org/W1514555144","doi":"https://doi.org/10.1186/s12859-015-0639-4","title":"GPCRtm: An amino acid substitution matrix for the transmembrane region of class A G Protein-Coupled Receptors","display_name":"GPCRtm: An amino acid substitution matrix for the transmembrane region of class A G Protein-Coupled Receptors","publication_year":2015,"publication_date":"2015-07-01","ids":{"openalex":"https://openalex.org/W1514555144","doi":"https://doi.org/10.1186/s12859-015-0639-4","mag":"1514555144","pmid":"https://pubmed.ncbi.nlm.nih.gov/26134144"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0639-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0639-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0639-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0639-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040927028","display_name":"Santiago R\u00edos","orcid":"https://orcid.org/0000-0003-2492-9247"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Santiago Rios","raw_affiliation_strings":["Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona, 08193, Bellaterra, Barcelona, Spain","Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona Barcelona Spain"],"affiliations":[{"raw_affiliation_string":"Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona, 08193, Bellaterra, Barcelona, Spain","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona Barcelona Spain","institution_ids":["https://openalex.org/I123044942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103515861","display_name":"Marta Fern\u00e1ndez","orcid":null},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Marta F. Fernandez","raw_affiliation_strings":["Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona, 08193, Bellaterra, Barcelona, Spain","Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona Barcelona Spain"],"affiliations":[{"raw_affiliation_string":"Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona, 08193, Bellaterra, Barcelona, Spain","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona Barcelona Spain","institution_ids":["https://openalex.org/I123044942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031417888","display_name":"Gianluigi Caltabiano","orcid":"https://orcid.org/0000-0002-2929-7069"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gianluigi Caltabiano","raw_affiliation_strings":["Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona, 08193, Bellaterra, Barcelona, Spain","Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona Barcelona Spain"],"affiliations":[{"raw_affiliation_string":"Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona, 08193, Bellaterra, Barcelona, Spain","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona Barcelona Spain","institution_ids":["https://openalex.org/I123044942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053521024","display_name":"Mercedes Campillo","orcid":"https://orcid.org/0000-0002-6315-0212"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mercedes Campillo","raw_affiliation_strings":["Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona, 08193, Bellaterra, Barcelona, Spain","Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona Barcelona Spain"],"affiliations":[{"raw_affiliation_string":"Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona, 08193, Bellaterra, Barcelona, Spain","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona Barcelona Spain","institution_ids":["https://openalex.org/I123044942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046444163","display_name":"Leonardo Pardo","orcid":"https://orcid.org/0000-0003-1778-7420"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Leonardo Pardo","raw_affiliation_strings":["Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona, 08193, Bellaterra, Barcelona, Spain","Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona Barcelona Spain"],"affiliations":[{"raw_affiliation_string":"Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona, 08193, Bellaterra, Barcelona, Spain","institution_ids":["https://openalex.org/I123044942"]},{"raw_affiliation_string":"Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona Barcelona Spain","institution_ids":["https://openalex.org/I123044942"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058251799","display_name":"\u00c1ngel Gonz\u00e1lez","orcid":"https://orcid.org/0000-0002-2284-8307"},"institutions":[{"id":"https://openalex.org/I123044942","display_name":"Universitat Aut\u00f2noma de Barcelona","ror":"https://ror.org/052g8jq94","country_code":"ES","type":"education","lineage":["https://openalex.org/I123044942"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Angel Gonzalez","raw_affiliation_strings":["Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona, 08193, Bellaterra, Barcelona, Spain. Angel.Gonzalez@uab.es","Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona Barcelona Spain"],"affiliations":[{"raw_affiliation_string":"Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona, 08193, Bellaterra, Barcelona, Spain. Angel.Gonzalez@uab.es","institution_ids":[]},{"raw_affiliation_string":"Laboratori de Medicina Computacional, Unitat de Bioestad\u00edstica, Facultat de Medicina, Universitat Aut\u00f2noma de Barcelona Barcelona Spain","institution_ids":["https://openalex.org/I123044942"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5040927028"],"corresponding_institution_ids":["https://openalex.org/I123044942"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.358,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.79929148,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"16","issue":"1","first_page":"206","last_page":"206"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10814","display_name":"Neuropeptides and Animal Physiology","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10077","display_name":"Neuroscience and Neuropharmacology Research","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transmembrane-protein","display_name":"Transmembrane protein","score":0.7153311371803284},{"id":"https://openalex.org/keywords/transmembrane-domain","display_name":"Transmembrane domain","score":0.712145209312439},{"id":"https://openalex.org/keywords/rhodopsin","display_name":"Rhodopsin","score":0.6710296869277954},{"id":"https://openalex.org/keywords/g-protein-coupled-receptor","display_name":"G protein-coupled receptor","score":0.6403473019599915},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.6077991127967834},{"id":"https://openalex.org/keywords/membrane-protein","display_name":"Membrane protein","score":0.5406057834625244},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.47336241602897644},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.39730751514434814},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36167624592781067},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.28795063495635986},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.272507905960083},{"id":"https://openalex.org/keywords/membrane","display_name":"Membrane","score":0.26089340448379517}],"concepts":[{"id":"https://openalex.org/C24530287","wikidata":"https://www.wikidata.org/wiki/Q424204","display_name":"Transmembrane protein","level":3,"score":0.7153311371803284},{"id":"https://openalex.org/C118892022","wikidata":"https://www.wikidata.org/wiki/Q7834587","display_name":"Transmembrane domain","level":3,"score":0.712145209312439},{"id":"https://openalex.org/C202033177","wikidata":"https://www.wikidata.org/wiki/Q423107","display_name":"Rhodopsin","level":3,"score":0.6710296869277954},{"id":"https://openalex.org/C135285700","wikidata":"https://www.wikidata.org/wiki/Q38173","display_name":"G protein-coupled receptor","level":3,"score":0.6403473019599915},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.6077991127967834},{"id":"https://openalex.org/C144647389","wikidata":"https://www.wikidata.org/wiki/Q423042","display_name":"Membrane protein","level":3,"score":0.5406057834625244},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.47336241602897644},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.39730751514434814},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36167624592781067},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.28795063495635986},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.272507905960083},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.26089340448379517},{"id":"https://openalex.org/C2780827179","wikidata":"https://www.wikidata.org/wiki/Q422001","display_name":"Retinal","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012243","descriptor_name":"Rhodopsin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012243","descriptor_name":"Rhodopsin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012243","descriptor_name":"Rhodopsin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019943","descriptor_name":"Amino Acid Substitution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-015-0639-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0639-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0639-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26134144","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26134144","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:ddd.uab.cat:185367","is_oa":true,"landing_page_url":"https://ddd.uab.cat/record/185367","pdf_url":"https://ddd.uab.cat/record/185367","source":{"id":"https://openalex.org/S4306400380","display_name":"Dip\u00f2sit Digital de Documents de la UAB (Universitat Aut\u00f2noma de Barcelona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I123044942","host_organization_name":"Universitat Aut\u00f2noma de Barcelona","host_organization_lineage":["https://openalex.org/I123044942"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:europepmc.org:3455421","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4489126","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:urv.cat:imarina:9267167","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11797/imarina9267167","pdf_url":null,"source":{"id":"https://openalex.org/S4306401279","display_name":"Repositori institucional URV (Universitat Rovira i Virgili)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I55952717","host_organization_name":"Universitat Rovira i Virgili","host_organization_lineage":["https://openalex.org/I55952717"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bmc Bioinformatics","raw_type":"Journal Publications"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0639-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0639-4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0639-4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323737","display_name":"Ministerio de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/034900433"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1514555144.pdf","grobid_xml":"https://content.openalex.org/works/W1514555144.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W36589880","https://openalex.org/W51161921","https://openalex.org/W1479720172","https://openalex.org/W1603274157","https://openalex.org/W1833104430","https://openalex.org/W1966041739","https://openalex.org/W1970613671","https://openalex.org/W1973578915","https://openalex.org/W1974063549","https://openalex.org/W1975264148","https://openalex.org/W1975740938","https://openalex.org/W1979686694","https://openalex.org/W1987391103","https://openalex.org/W2004575181","https://openalex.org/W2010508157","https://openalex.org/W2017565147","https://openalex.org/W2022368654","https://openalex.org/W2022632237","https://openalex.org/W2033388874","https://openalex.org/W2034395399","https://openalex.org/W2053053243","https://openalex.org/W2055875197","https://openalex.org/W2062355909","https://openalex.org/W2062391718","https://openalex.org/W2069819633","https://openalex.org/W2073110681","https://openalex.org/W2107427637","https://openalex.org/W2107460409","https://openalex.org/W2109014958","https://openalex.org/W2115399262","https://openalex.org/W2117003397","https://openalex.org/W2118581189","https://openalex.org/W2122987904","https://openalex.org/W2127774996","https://openalex.org/W2137015675","https://openalex.org/W2140222009","https://openalex.org/W2143210482","https://openalex.org/W2147241078","https://openalex.org/W2148498717","https://openalex.org/W2158109323","https://openalex.org/W2160378127","https://openalex.org/W2166015573","https://openalex.org/W2316003229","https://openalex.org/W2601913882","https://openalex.org/W2605068739","https://openalex.org/W4230049581"],"related_works":["https://openalex.org/W1540599686","https://openalex.org/W1997080721","https://openalex.org/W1988328173","https://openalex.org/W2014901451","https://openalex.org/W2035100851","https://openalex.org/W2188283061","https://openalex.org/W1971026764","https://openalex.org/W1998210420","https://openalex.org/W1514555144","https://openalex.org/W1814961890"],"abstract_inverted_index":{"Analysis":[0],"of":[1,14,28,65,72,97,102],"amino":[2,30,56],"acid":[3],"frequencies":[4],"and":[5,45,80,93],"values":[6],"obtained":[7],"from":[8,18],"the":[9,25,29,36,63,66,70,95],"GPCRtm":[10],"matrix":[11,86],"reveals":[12],"patterns":[13],"residue":[15],"replacements":[16],"different":[17,52],"other":[19,55],"standard":[20],"substitution":[21],"matrices.":[22],"GPCRs":[23],"prioritize":[24],"reactivity":[26],"properties":[27],"acids":[31],"over":[32],"their":[33],"bulkiness":[34],"in":[35,69,75,90],"transmembrane":[37,67],"regions.":[38],"A":[39],"distinctive":[40],"role":[41,64],"is":[42,60],"that":[43,74],"charged":[44],"polar":[46],"residues":[47],"seem":[48],"to":[49,62],"evolve":[50],"at":[51],"rates":[53],"than":[54],"acids.":[57],"This":[58,84],"observation":[59],"related":[61],"bundle":[68],"binding":[71],"ligands,":[73],"many":[76],"cases":[77],"involve":[78],"electrostatic":[79],"hydrogen":[81],"bond":[82],"interactions.":[83],"new":[85],"can":[87],"be":[88],"useful":[89],"database":[91],"search":[92],"for":[94],"construction":[96],"more":[98],"accurate":[99],"sequence":[100],"alignments":[101],"GPCRs.":[103]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
