{"id":"https://openalex.org/W1548134937","doi":"https://doi.org/10.1186/s12859-015-0628-7","title":"Light-weight reference-based compression of FASTQ data","display_name":"Light-weight reference-based compression of FASTQ data","publication_year":2015,"publication_date":"2015-06-09","ids":{"openalex":"https://openalex.org/W1548134937","doi":"https://doi.org/10.1186/s12859-015-0628-7","mag":"1548134937","pmid":"https://pubmed.ncbi.nlm.nih.gov/26051252"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0628-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0628-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0628-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0628-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101414442","display_name":"Yongpeng Zhang","orcid":"https://orcid.org/0000-0001-7955-5524"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongpeng Zhang","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China. 2120230303@email.szu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China. 2120230303@email.szu.edu.cn","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101766975","display_name":"Linsen Li","orcid":"https://orcid.org/0000-0001-6586-9581"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Linsen Li","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China. li5linsen@163.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China. li5linsen@163.com","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030659829","display_name":"Yanli Yang","orcid":"https://orcid.org/0000-0003-1919-8857"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanli Yang","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China. yylszu@163.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China. yylszu@163.com","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007055094","display_name":"Xiao Yang","orcid":"https://orcid.org/0000-0002-1353-4170"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiao Yang","raw_affiliation_strings":["The Broad Institute, Cambridge, MA, 02142, USA. xiaoyang@broadinstitute.org"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Broad Institute, Cambridge, MA, 02142, USA. xiaoyang@broadinstitute.org","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011186506","display_name":"Shan He","orcid":"https://orcid.org/0000-0003-1694-1465"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Shan He","raw_affiliation_strings":["School of Computer Science, University of Birmingham, Birmingham, B15 2TT, UK. S.He@cs.bham.ac.uk"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Birmingham, Birmingham, B15 2TT, UK. S.He@cs.bham.ac.uk","institution_ids":["https://openalex.org/I79619799"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052762681","display_name":"Zexuan Zhu","orcid":"https://orcid.org/0000-0001-8479-6904"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zexuan Zhu","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China. zhuzx@szu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China. zhuzx@szu.edu.cn","institution_ids":["https://openalex.org/I180726961"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5052762681"],"corresponding_institution_ids":["https://openalex.org/I180726961"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":8.2941,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.97420187,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"16","issue":"1","first_page":"188","last_page":"188"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9404000043869019,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9404000043869019,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.024900000542402267,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.004999999888241291,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lossless-compression","display_name":"Lossless compression","score":0.8484320640563965},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7735631465911865},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.6681079864501953},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6170295476913452},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.541155219078064},{"id":"https://openalex.org/keywords/lossy-compression","display_name":"Lossy compression","score":0.5342062711715698},{"id":"https://openalex.org/keywords/compression-ratio","display_name":"Compression ratio","score":0.5311915874481201},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.44665712118148804},{"id":"https://openalex.org/keywords/data-stream-mining","display_name":"Data stream mining","score":0.43866166472435},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.434466689825058},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3700748682022095},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15695732831954956}],"concepts":[{"id":"https://openalex.org/C81081738","wikidata":"https://www.wikidata.org/wiki/Q55542","display_name":"Lossless compression","level":3,"score":0.8484320640563965},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7735631465911865},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.6681079864501953},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6170295476913452},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.541155219078064},{"id":"https://openalex.org/C165021410","wikidata":"https://www.wikidata.org/wiki/Q55564","display_name":"Lossy compression","level":2,"score":0.5342062711715698},{"id":"https://openalex.org/C25797200","wikidata":"https://www.wikidata.org/wiki/Q828137","display_name":"Compression ratio","level":3,"score":0.5311915874481201},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.44665712118148804},{"id":"https://openalex.org/C89198739","wikidata":"https://www.wikidata.org/wiki/Q3079880","display_name":"Data stream mining","level":2,"score":0.43866166472435},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.434466689825058},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3700748682022095},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15695732831954956},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C171146098","wikidata":"https://www.wikidata.org/wiki/Q124192","display_name":"Automotive engineering","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C511840579","wikidata":"https://www.wikidata.org/wiki/Q12757","display_name":"Internal combustion engine","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-015-0628-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0628-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0628-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26051252","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26051252","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4459677","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4459677","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/517cd003-bb6b-4e9a-893f-157337155dbf","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/517cd003-bb6b-4e9a-893f-157337155dbf","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Zhang, Y, Li, L, Yang, Y, Yang, X, He, S & Zhu, Z 2015, 'Light-weight reference-based compression of FASTQ data', BMC Bioinformatics, vol. 16, no. 1, 188. https://doi.org/10.1186/s12859-015-0628-7","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0628-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0628-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0628-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1499457473","display_name":null,"funder_award_id":"61205092","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5801539079","display_name":null,"funder_award_id":"S2012010009545","funder_id":"https://openalex.org/F4320321921","funder_display_name":"Natural Science Foundation of Guangdong Province"},{"id":"https://openalex.org/G8413540691","display_name":"\u57fa\u4e8e\u9ad8\u901a\u91cfRNA-Seq\u548c\u591a\u76ee\u6807\u534f\u540c\u6f14\u5316\u6a21\u56e0\u8ba1\u7b97\u7684\u75be\u75c5\u6a21\u5757\u8bc6\u522b\u7814\u7a76","funder_award_id":"61471246","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321921","display_name":"Natural Science Foundation of Guangdong Province","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1548134937.pdf","grobid_xml":"https://content.openalex.org/works/W1548134937.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W61452564","https://openalex.org/W1513515886","https://openalex.org/W2003730300","https://openalex.org/W2006088692","https://openalex.org/W2010928148","https://openalex.org/W2020255088","https://openalex.org/W2024143985","https://openalex.org/W2034337154","https://openalex.org/W2051929999","https://openalex.org/W2084821192","https://openalex.org/W2085522429","https://openalex.org/W2092880969","https://openalex.org/W2097341408","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2110800670","https://openalex.org/W2111044311","https://openalex.org/W2112509895","https://openalex.org/W2114792961","https://openalex.org/W2116041602","https://openalex.org/W2124985265","https://openalex.org/W2126332033","https://openalex.org/W2126353995","https://openalex.org/W2136651963","https://openalex.org/W2138196010","https://openalex.org/W2142434250","https://openalex.org/W2143423077","https://openalex.org/W2159084616","https://openalex.org/W2159683766","https://openalex.org/W2166588423","https://openalex.org/W2171057071","https://openalex.org/W3085899260","https://openalex.org/W6701658381"],"related_works":["https://openalex.org/W2978432024","https://openalex.org/W1995805316","https://openalex.org/W3180760233","https://openalex.org/W1568381040","https://openalex.org/W1970394887","https://openalex.org/W2276828234","https://openalex.org/W2148203918","https://openalex.org/W4205915047","https://openalex.org/W1529601338","https://openalex.org/W3080614128"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,63,140],"exponential":[2],"growth":[3],"of":[4,24,66,173,205],"next":[5],"generation":[6],"sequencing":[7],"(NGS)":[8],"data":[9,15,83,143,164,185,198,210],"has":[10],"posed":[11],"big":[12],"challenges":[13],"to":[14,39,59,104,125,180,202],"storage,":[16],"management":[17],"and":[18,74,92,98,108,133,166,212],"archive.":[19],"Data":[20],"compression":[21,30,36,55,153,168,186],"is":[22,176,190,215],"one":[23],"the":[25,40,87,106,115,171,203],"effective":[26],"solutions,":[27],"where":[28],"reference-based":[29,54],"strategies":[31],"can":[32],"typically":[33],"achieve":[34],"superior":[35,179],"ratios":[37,169],"compared":[38],"ones":[41],"not":[42],"relying":[43],"on":[44,160],"any":[45,67],"reference.":[46],"RESULTS:":[47],"This":[48,175],"paper":[49],"presents":[50],"a":[51,120,191],"lossless":[52,183,196],"light-weight":[53,122],"algorithm":[56],"namely":[57],"LW-FQZip":[58,118,157,189,214],"compress":[60,105],"FASTQ":[61,197],"data.":[62],"three":[64,82,141],"components":[65],"given":[68],"input,":[69],"i.e.,":[70],"metadata,":[71],"short":[72,116],"reads":[73],"quality":[75,109],"score":[76,110],"strings,":[77],"are":[78,90,102,145],"first":[79],"parsed":[80],"into":[81],"streams":[84,144],"in":[85,170],"which":[86],"redundancy":[88],"information":[89],"identified":[91],"eliminated":[93],"independently.":[94],"Particularly,":[95],"well-designed":[96],"incremental":[97],"run-length-limited":[99],"encoding":[100],"schemes":[101],"utilized":[103],"metadata":[107],"streams,":[111],"respectively.":[112],"To":[113],"handle":[114],"reads,":[117],"uses":[119],"novel":[121],"mapping":[123],"model":[124],"fast":[126],"map":[127],"them":[128],"against":[129],"external":[130],"reference":[131],"sequence(s)":[132],"produce":[134],"concise":[135],"alignment":[136],"results":[137],"for":[138,208],"storage.":[139],"processed":[142],"then":[146],"packed":[147],"together":[148],"with":[149],"some":[150],"general":[151],"purpose":[152],"algorithms":[154],"like":[155],"LZMA.":[156],"was":[158],"evaluated":[159],"eight":[161],"real-world":[162],"NGS":[163,184,209],"sets":[165],"achieved":[167],"range":[172],"0.111-0.201.":[174],"comparable":[177],"or":[178],"other":[181],"state-of-the-art":[182],"algorithms.":[187],"CONCLUSIONS:":[188],"program":[192],"that":[193],"enables":[194],"efficient":[195],"compression.":[199],"It":[200],"contributes":[201],"state":[204],"art":[206],"applications":[207],"storage":[211],"transmission.":[213],"freely":[216],"available":[217],"online":[218],"at:":[219],"http://csse.szu.edu.cn/staff/zhuzx/LWFQZip.":[220]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
