{"id":"https://openalex.org/W2117697057","doi":"https://doi.org/10.1186/s12859-015-0627-8","title":"WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration","display_name":"WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration","publication_year":2015,"publication_date":"2015-06-07","ids":{"openalex":"https://openalex.org/W2117697057","doi":"https://doi.org/10.1186/s12859-015-0627-8","mag":"2117697057","pmid":"https://pubmed.ncbi.nlm.nih.gov/26051157"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0627-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0627-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0627-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0627-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103152039","display_name":"Anthony Santella","orcid":"https://orcid.org/0000-0002-5696-0591"},"institutions":[{"id":"https://openalex.org/I39965400","display_name":"Kettering University","ror":"https://ror.org/03rcspa57","country_code":"US","type":"education","lineage":["https://openalex.org/I39965400"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anthony Santella","raw_affiliation_strings":["Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA. santella@mskcc.org","Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA. santella@mskcc.org","institution_ids":[]},{"raw_affiliation_string":"Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA","institution_ids":["https://openalex.org/I39965400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068478683","display_name":"Ra\u00fal Catena","orcid":"https://orcid.org/0000-0003-0262-0062"},"institutions":[{"id":"https://openalex.org/I39965400","display_name":"Kettering University","ror":"https://ror.org/03rcspa57","country_code":"US","type":"education","lineage":["https://openalex.org/I39965400"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ra\u00fal Catena","raw_affiliation_strings":["Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA. raulcatena@gmail.com","Present Address: Institute for Molecular Life Sciences, University of Z\u00fcrich, Z\u00fcrich, Switzerland. raulcatena@gmail.com","Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA. raulcatena@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Present Address: Institute for Molecular Life Sciences, University of Z\u00fcrich, Z\u00fcrich, Switzerland. raulcatena@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA","institution_ids":["https://openalex.org/I39965400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026167691","display_name":"Ismar Kovacevic","orcid":null},"institutions":[{"id":"https://openalex.org/I39965400","display_name":"Kettering University","ror":"https://ror.org/03rcspa57","country_code":"US","type":"education","lineage":["https://openalex.org/I39965400"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ismar Kovacevic","raw_affiliation_strings":["Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA. ismar.kovacevic@gmail.com","Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA. ismar.kovacevic@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA","institution_ids":["https://openalex.org/I39965400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022235582","display_name":"Pavak K. Shah","orcid":"https://orcid.org/0000-0002-2603-5995"},"institutions":[{"id":"https://openalex.org/I39965400","display_name":"Kettering University","ror":"https://ror.org/03rcspa57","country_code":"US","type":"education","lineage":["https://openalex.org/I39965400"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pavak Shah","raw_affiliation_strings":["Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA. shahp2@mskcc.org","Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA. shahp2@mskcc.org","institution_ids":[]},{"raw_affiliation_string":"Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA","institution_ids":["https://openalex.org/I39965400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001615150","display_name":"Zidong Yu","orcid":"https://orcid.org/0000-0002-2617-4864"},"institutions":[{"id":"https://openalex.org/I39965400","display_name":"Kettering University","ror":"https://ror.org/03rcspa57","country_code":"US","type":"education","lineage":["https://openalex.org/I39965400"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zidong Yu","raw_affiliation_strings":["Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA. yuzidong@just.edu.cn","School of Energy and Power Engineering, Jiangsu University of Science and Technology, Zhenjiang, Jiangsu, 212003, China. yuzidong@just.edu.cn","Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA. yuzidong@just.edu.cn","institution_ids":[]},{"raw_affiliation_string":"School of Energy and Power Engineering, Jiangsu University of Science and Technology, Zhenjiang, Jiangsu, 212003, China. yuzidong@just.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA","institution_ids":["https://openalex.org/I39965400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077181727","display_name":"Javier Marquina-Solis","orcid":"https://orcid.org/0000-0002-1943-3442"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Javier Marquina-Solis","raw_affiliation_strings":["Program in Cellular Neuroscience, Neurodegeneration and Repair, Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA. javier.marquina@yale.edu","Program in Cellular Neuroscience, Neurodegeneration and Repair, Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Cellular Neuroscience, Neurodegeneration and Repair, Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA. javier.marquina@yale.edu","institution_ids":[]},{"raw_affiliation_string":"Program in Cellular Neuroscience, Neurodegeneration and Repair, Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026608259","display_name":"Abhishek Kumar","orcid":"https://orcid.org/0000-0002-4961-6469"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abhishek Kumar","raw_affiliation_strings":["Program in Cellular Neuroscience, Neurodegeneration and Repair, Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA. abhishek.kumar@nih.gov","Section on High Resolution Optical Imaging, National Institute of Biomedical Imaging and Bioengineering NIH, Bethesda, MD, USA. abhishek.kumar@nih.gov","Program in Cellular Neuroscience, Neurodegeneration and Repair, Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Cellular Neuroscience, Neurodegeneration and Repair, Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA. abhishek.kumar@nih.gov","institution_ids":[]},{"raw_affiliation_string":"Section on High Resolution Optical Imaging, National Institute of Biomedical Imaging and Bioengineering NIH, Bethesda, MD, USA. abhishek.kumar@nih.gov","institution_ids":[]},{"raw_affiliation_string":"Program in Cellular Neuroscience, Neurodegeneration and Repair, Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058148831","display_name":"Yicong Wu","orcid":"https://orcid.org/0000-0002-8819-7527"},"institutions":[{"id":"https://openalex.org/I4210088243","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210088243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yicong Wu","raw_affiliation_strings":["Section on High Resolution Optical Imaging, National Institute of Biomedical Imaging and Bioengineering NIH, Bethesda, MD, USA. wuy7@mail.nih.gov","Section on High Resolution Optical Imaging, National Institute of Biomedical Imaging and Bioengineering NIH, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Section on High Resolution Optical Imaging, National Institute of Biomedical Imaging and Bioengineering NIH, Bethesda, MD, USA. wuy7@mail.nih.gov","institution_ids":[]},{"raw_affiliation_string":"Section on High Resolution Optical Imaging, National Institute of Biomedical Imaging and Bioengineering NIH, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210088243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027644564","display_name":"James C. Schaff","orcid":"https://orcid.org/0000-0003-3286-7736"},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Schaff","raw_affiliation_strings":["Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT, USA. Schaff@uchc.edu","Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT, USA. Schaff@uchc.edu","institution_ids":[]},{"raw_affiliation_string":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT, USA","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066749886","display_name":"Daniel A. Col\u00f3n\u2010Ramos","orcid":"https://orcid.org/0000-0003-0223-7717"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Col\u00f3n-Ramos","raw_affiliation_strings":["Program in Cellular Neuroscience, Neurodegeneration and Repair, Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA. daniel.colon-ramos@yale.edu","Program in Cellular Neuroscience, Neurodegeneration and Repair, Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Cellular Neuroscience, Neurodegeneration and Repair, Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA. daniel.colon-ramos@yale.edu","institution_ids":[]},{"raw_affiliation_string":"Program in Cellular Neuroscience, Neurodegeneration and Repair, Department of Cell Biology, Yale University School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056504447","display_name":"Hari Shroff","orcid":"https://orcid.org/0000-0003-3613-8215"},"institutions":[{"id":"https://openalex.org/I4210088243","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210088243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hari Shroff","raw_affiliation_strings":["Section on High Resolution Optical Imaging, National Institute of Biomedical Imaging and Bioengineering NIH, Bethesda, MD, USA. hari.shroff@nih.gov","Section on High Resolution Optical Imaging, National Institute of Biomedical Imaging and Bioengineering NIH, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Section on High Resolution Optical Imaging, National Institute of Biomedical Imaging and Bioengineering NIH, Bethesda, MD, USA. hari.shroff@nih.gov","institution_ids":[]},{"raw_affiliation_string":"Section on High Resolution Optical Imaging, National Institute of Biomedical Imaging and Bioengineering NIH, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210088243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017724492","display_name":"William A. Mohler","orcid":"https://orcid.org/0000-0003-3586-547X"},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"funder","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"William A. Mohler","raw_affiliation_strings":["Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT, USA. mohler.william@gmail.com","Dept. of Genetics & Dev Biology, University of Connecticut Health Center, Farmington, CT, USA. mohler.william@gmail.com","Dept. of Genetics & Dev Biology, University of Connecticut Health Center, Farmington, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT, USA. mohler.william@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Dept. of Genetics & Dev Biology, University of Connecticut Health Center, Farmington, CT, USA. mohler.william@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Dept. of Genetics & Dev Biology, University of Connecticut Health Center, Farmington, CT, USA","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038526657","display_name":"Zhirong Bao","orcid":"https://orcid.org/0000-0002-2201-2745"},"institutions":[{"id":"https://openalex.org/I39965400","display_name":"Kettering University","ror":"https://ror.org/03rcspa57","country_code":"US","type":"education","lineage":["https://openalex.org/I39965400"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhirong Bao","raw_affiliation_strings":["Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA. baoz@mskcc.org","Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA. baoz@mskcc.org","institution_ids":[]},{"raw_affiliation_string":"Developmental Biology Program, Sloan-Kettering Institute, New York, NY, USA","institution_ids":["https://openalex.org/I39965400"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5017724492"],"corresponding_institution_ids":["https://openalex.org/I75929689"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.0963,"has_fulltext":true,"cited_by_count":45,"citation_normalized_percentile":{"value":0.86226964,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"16","issue":"1","first_page":"189","last_page":"189"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.7215999960899353,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.7215999960899353,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.05920000001788139,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.05400000140070915,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6832155585289001},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4996321201324463},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4784296154975891},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4609971046447754},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4567275643348694},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3349384069442749},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2133101224899292}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6832155585289001},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4996321201324463},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4784296154975891},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4609971046447754},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4567275643348694},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3349384069442749},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2133101224899292},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009420","descriptor_name":"Nervous System","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009420","descriptor_name":"Nervous System","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009420","descriptor_name":"Nervous System","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009420","descriptor_name":"Nervous System","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009420","descriptor_name":"Nervous System","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":"Q000254","qualifier_name":"growth & development","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-015-0627-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0627-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0627-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26051157","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26051157","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4459063","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4459063","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0627-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0627-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0627-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6200000047683716,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3030251414","display_name":null,"funder_award_id":"HD075602","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G356675551","display_name":null,"funder_award_id":"R24OD016474","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337363","display_name":"National Institute of Biomedical Imaging and Bioengineering","ror":"https://ror.org/00372qc85"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2117697057.pdf","grobid_xml":"https://content.openalex.org/works/W2117697057.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1488457991","https://openalex.org/W1821435713","https://openalex.org/W1966459214","https://openalex.org/W1972102879","https://openalex.org/W1973282455","https://openalex.org/W1975389666","https://openalex.org/W1985220458","https://openalex.org/W1996728217","https://openalex.org/W2000396646","https://openalex.org/W2004436791","https://openalex.org/W2013166782","https://openalex.org/W2018227909","https://openalex.org/W2025244019","https://openalex.org/W2030233281","https://openalex.org/W2031312855","https://openalex.org/W2061801563","https://openalex.org/W2064226038","https://openalex.org/W2068948802","https://openalex.org/W2080063439","https://openalex.org/W2088271666","https://openalex.org/W2112782859","https://openalex.org/W2131793314","https://openalex.org/W2144538224","https://openalex.org/W2149404019","https://openalex.org/W2150151285","https://openalex.org/W2160938187","https://openalex.org/W2163314583","https://openalex.org/W2170088181","https://openalex.org/W2170174900","https://openalex.org/W2171911690","https://openalex.org/W4232690806"],"related_works":["https://openalex.org/W4213212078","https://openalex.org/W2112788825","https://openalex.org/W2187227032","https://openalex.org/W1963735073","https://openalex.org/W2575246084","https://openalex.org/W106707639","https://openalex.org/W4233129888","https://openalex.org/W2146247781","https://openalex.org/W2144684733","https://openalex.org/W4299950557"],"abstract_inverted_index":{"BACKGROUND:":[0],"Imaging":[1],"and":[2,10,18,42,128,168,175,236,250,259,279,292,305,325,343,379,391,424,434],"image":[3],"analysis":[4],"advances":[5],"are":[6,89,154,275],"yielding":[7],"increasingly":[8],"complete":[9],"complicated":[11],"records":[12],"of":[13,28,95,110,117,130,141,161,218,227,272,329,362,383,398,410,437,442],"cellular":[14],"events":[15,63,428],"in":[16,48,99,221,269,431],"tissues":[17,84],"whole":[19],"embryos.":[20,86],"The":[21,203,225,285],"ability":[22,421],"to":[23,26,40,52,106,148,156,209,256,281,365,377,394,422],"follow":[24],"hundreds":[25],"thousands":[27],"cells":[29,220,258,265,338],"at":[30],"the":[31,72,83,93,96,120,126,158,215,222,315,349,359,366,372,381,395,401,419,426,432,440,443],"individual":[32],"level":[33],"demands":[34],"a":[35,49,104,138,191,196,211,234,354,405],"spatio-temporal":[36,67,396],"data":[37,133,146,166],"infrastructure:":[38],"tools":[39,75,153],"assemble":[41],"collate":[43,164],"knowledge":[44,78,170,363],"about":[45,180,243,247,309,347],"development":[46],"spatially":[47,355],"manner":[50],"analogous":[51],"geographic":[53],"information":[54,242,346],"systems":[55],"(GIS).":[56],"Just":[57],"as":[58,266,353],"GIS":[59,124],"indexes":[60],"items":[61],"or":[62,68,85],"based":[64,79,339],"on":[65,71,80,340],"their":[66,310,341],"4D":[69,97,197],"location":[70,81],"Earth":[73],"these":[74],"would":[76],"organize":[77],"within":[82],"Developmental":[87],"processes":[88,304],"highly":[90],"context-specific,":[91],"but":[92],"complexity":[94],"environment":[98],"which":[100],"they":[101],"unfold":[102],"is":[103,288],"barrier":[105],"assembling":[107],"an":[108,270,298,320],"understanding":[109,127],"any":[111],"particular":[112],"process":[113],"from":[114],"diverse":[115],"sources":[116],"information.":[118],"In":[119],"same":[121],"way":[122],"that":[123,194,244,263,387,429],"aids":[125],"use":[129],"geo-located":[131],"large":[132,144,165,360],"sets,":[134],"software":[135],"can,":[136],"with":[137,171,233,319,414],"proper":[139],"frame":[140],"reference,":[142],"allow":[143],"biological":[145],"sets":[147,167],"be":[149,231,254,375],"understood":[150],"spatially.":[151],"Intuitive":[152],"needed":[155],"navigate":[157,210,423],"spatial":[159,173],"structure":[160,174],"complex":[162],"tissue,":[163],"existing":[169],"this":[172,185],"help":[176],"users":[177,208,335],"derive":[178],"hypotheses":[179,308],"developmental":[181,198,303,330,427],"mechanisms.":[182],"RESULTS:":[183],"Toward":[184],"goal":[186],"we":[187],"have":[188],"developed":[189],"WormGUIDES,":[190],"mobile":[192,205,286],"application":[193],"presents":[195],"atlas":[199],"for":[200,240,290,301,323,345],"Caenorhabditis":[201],"elegans.":[202],"WormGUIDES":[204,283,296],"app":[206,287,350,373,402],"enables":[207],"3D":[212],"model":[213],"depicting":[214],"nuclear":[216],"positions":[217],"all":[219],"developing":[223,306,324],"embryo.":[224],"identity":[226],"each":[228],"cell":[229,411],"can":[230,253,336,374],"queried":[232],"tap,":[235],"community":[237,369],"databases":[238],"searched":[239],"available":[241,289,364],"cell.":[245],"Information":[246],"ancestry,":[248],"fate":[249],"gene":[251],"expression":[252],"used":[255,376],"label":[257],"craft":[260],"customized":[261],"visualizations":[262,328],"highlight":[264],"potential":[267],"players":[268],"event":[271],"interest.":[273],"Scenes":[274],"easily":[276],"saved,":[277],"shared":[278],"published":[280],"other":[282,389],"users.":[284],"Android":[291],"iOS":[293],"platforms.":[294],"CONCLUSION:":[295],"provides":[297,314],"important":[299],"tool":[300],"examining":[302],"mechanistic":[307],"control.":[311],"Critically,":[312],"it":[313],"typical":[316],"end":[317],"user":[318],"intuitive":[321],"interface":[322],"sharing":[326],"custom":[327],"processes.":[331],"Equally":[332],"important,":[333],"because":[334],"select":[337],"position":[342],"search":[344],"them,":[348],"also":[351],"serves":[352],"organized":[356],"index":[357],"into":[358],"body":[361],"C.":[367],"elegans":[368],"online.":[370],"Moreover,":[371],"create":[378],"publish":[380],"result":[382,430],"exploration:":[384],"interactive":[385],"content":[386],"brings":[388],"researchers":[390],"students":[392],"directly":[393],"point":[397],"insight.":[399],"Ultimately":[400],"will":[403,417],"incorporate":[404],"detailed":[406],"time":[407],"lapse":[408],"record":[409],"shape,":[412],"beginning":[413],"neurons.":[415],"This":[416],"add":[418],"key":[420],"understand":[425],"coordinated":[433],"precise":[435],"emergence":[436],"anatomy,":[438],"particularly":[439],"wiring":[441],"nervous":[444],"system.":[445]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2}],"updated_date":"2026-05-24T08:33:08.758527","created_date":"2025-10-10T00:00:00"}
