{"id":"https://openalex.org/W1856405414","doi":"https://doi.org/10.1186/s12859-015-0615-z","title":"Integrated web visualizations for protein-protein interaction databases","display_name":"Integrated web visualizations for protein-protein interaction databases","publication_year":2015,"publication_date":"2015-06-15","ids":{"openalex":"https://openalex.org/W1856405414","doi":"https://doi.org/10.1186/s12859-015-0615-z","mag":"1856405414","pmid":"https://pubmed.ncbi.nlm.nih.gov/26077899"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0615-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0615-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0615-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0615-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002021708","display_name":"Fleur Jeanquartier","orcid":"https://orcid.org/0000-0001-8607-9255"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Fleur Jeanquartier","raw_affiliation_strings":["Research Unit HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Auenbruggerplatz 2/V, Graz, 8036, Austria. f.jeanquartier@hci-kdd.org","Research Unit, HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Graz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Unit HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Auenbruggerplatz 2/V, Graz, 8036, Austria. f.jeanquartier@hci-kdd.org","institution_ids":["https://openalex.org/I202276237"]},{"raw_affiliation_string":"Research Unit, HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Graz, Austria","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044273117","display_name":"Claire Jean-Quartier","orcid":"https://orcid.org/0000-0002-0840-2173"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Claire Jean-Quartier","raw_affiliation_strings":["Research Unit HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Auenbruggerplatz 2/V, Graz, 8036, Austria. c.jeanquartier@hci-kdd.org","Research Unit, HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Graz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Unit HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Auenbruggerplatz 2/V, Graz, 8036, Austria. c.jeanquartier@hci-kdd.org","institution_ids":["https://openalex.org/I202276237"]},{"raw_affiliation_string":"Research Unit, HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Graz, Austria","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034657358","display_name":"Andreas Holzinger","orcid":"https://orcid.org/0000-0002-6786-5194"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]},{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Andreas Holzinger","raw_affiliation_strings":["Institute for Information Systems & Computer Media Graz University of Technology, Inffeldgasse 16c, Graz, 8010, Austria. a.holzinger@tugraz.at","Research Unit HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Auenbruggerplatz 2/V, Graz, 8036, Austria. a.holzinger@tugraz.at","Research Unit, HCI-KDD, Institute for Medical Informatics, Statistics & Documentation, Medical University Graz, Graz, Austria","Institute for Information Systems and Computer Media, Graz University of Technology, Graz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Information Systems & Computer Media Graz University of Technology, Inffeldgasse 16c, Graz, 8010, Austria. a.holzinger@tugraz.at","institution_ids":["https://openalex.org/I4092182"]},{"raw_affiliation_string":"Research Unit HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Auenbruggerplatz 2/V, Graz, 8036, Austria. a.holzinger@tugraz.at","institution_ids":["https://openalex.org/I202276237"]},{"raw_affiliation_string":"Research Unit, HCI-KDD, Institute for Medical Informatics, Statistics & Documentation, Medical University Graz, Graz, Austria","institution_ids":["https://openalex.org/I202276237"]},{"raw_affiliation_string":"Institute for Information Systems and Computer Media, Graz University of Technology, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002021708"],"corresponding_institution_ids":["https://openalex.org/I202276237"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.6602,"has_fulltext":true,"cited_by_count":72,"citation_normalized_percentile":{"value":0.90138745,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"16","issue":"1","first_page":"195","last_page":"195"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6485000252723694,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6485000252723694,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.2085999995470047,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.03880000114440918,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.734128475189209},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.734089732170105},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.5916804075241089},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.4872550070285797},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.46982574462890625},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.45192572474479675},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4225069582462311},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.4149738550186157},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.38712042570114136},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3530351519584656},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2897513210773468},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.2174713909626007}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.734128475189209},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.734089732170105},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.5916804075241089},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.4872550070285797},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.46982574462890625},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.45192572474479675},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4225069582462311},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.4149738550186157},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.38712042570114136},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3530351519584656},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2897513210773468},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.2174713909626007}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-015-0615-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0615-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0615-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:26077899","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26077899","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:http://openlib.tugraz.at/564f2f887a00a","is_oa":true,"landing_page_url":"http://openlib.tugraz.at/564f2f887a00a","pdf_url":"http://openlib.tugraz.at/564f2f887a00a","source":{"id":"https://openalex.org/S4306400660","display_name":"TUGraz OPEN Library (Graz University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4092182","host_organization_name":"Graz University of Technology","host_organization_lineage":["https://openalex.org/I4092182"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3430089","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4466863","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0615-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0615-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0615-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1856405414.pdf","grobid_xml":"https://content.openalex.org/works/W1856405414.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W1221507","https://openalex.org/W19399978","https://openalex.org/W52809394","https://openalex.org/W106128476","https://openalex.org/W121801306","https://openalex.org/W189738358","https://openalex.org/W1577189687","https://openalex.org/W1663893139","https://openalex.org/W1773682126","https://openalex.org/W1823329909","https://openalex.org/W1951995880","https://openalex.org/W1968058641","https://openalex.org/W1968210549","https://openalex.org/W1971471239","https://openalex.org/W1975449945","https://openalex.org/W1986895634","https://openalex.org/W1987135115","https://openalex.org/W2003516452","https://openalex.org/W2008510122","https://openalex.org/W2014680590","https://openalex.org/W2016958746","https://openalex.org/W2023098599","https://openalex.org/W2032467855","https://openalex.org/W2035036132","https://openalex.org/W2040874922","https://openalex.org/W2042500831","https://openalex.org/W2043764521","https://openalex.org/W2047647552","https://openalex.org/W2049765837","https://openalex.org/W2055402385","https://openalex.org/W2056499061","https://openalex.org/W2057545775","https://openalex.org/W2058203255","https://openalex.org/W2060460012","https://openalex.org/W2064105042","https://openalex.org/W2071615681","https://openalex.org/W2077350268","https://openalex.org/W2087026647","https://openalex.org/W2092123736","https://openalex.org/W2095867585","https://openalex.org/W2097036913","https://openalex.org/W2099862356","https://openalex.org/W2102770365","https://openalex.org/W2104084103","https://openalex.org/W2105924489","https://openalex.org/W2107249189","https://openalex.org/W2111288686","https://openalex.org/W2118128448","https://openalex.org/W2123375001","https://openalex.org/W2125414037","https://openalex.org/W2128900650","https://openalex.org/W2128965269","https://openalex.org/W2135197754","https://openalex.org/W2135688535","https://openalex.org/W2135857288","https://openalex.org/W2137394523","https://openalex.org/W2143969914","https://openalex.org/W2144014661","https://openalex.org/W2147350830","https://openalex.org/W2150420891","https://openalex.org/W2152937754","https://openalex.org/W2155142785","https://openalex.org/W2165253681","https://openalex.org/W2184417913","https://openalex.org/W2244967609","https://openalex.org/W2247766769","https://openalex.org/W2487235601","https://openalex.org/W2490083709","https://openalex.org/W2615147949","https://openalex.org/W4234837039","https://openalex.org/W4238261237","https://openalex.org/W6656278342"],"related_works":["https://openalex.org/W4225274103","https://openalex.org/W2013728941","https://openalex.org/W2154046714","https://openalex.org/W2579659702","https://openalex.org/W2189613078","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W2542318691","https://openalex.org/W2547096368","https://openalex.org/W2586219255"],"abstract_inverted_index":{"BACKGROUND:":[0],"Understanding":[1],"living":[2],"systems":[3,92],"is":[4,186,209],"crucial":[5],"for":[6,46,56,245],"curing":[7],"diseases.":[8],"To":[9],"achieve":[10],"this":[11],"task":[12],"we":[13,147],"have":[14],"to":[15,64,81,117,233],"understand":[16],"biological":[17],"networks":[18],"based":[19],"on":[20,42,103,219],"protein-protein":[21,40,78,238],"interactions.":[22,184],"Bioinformatics":[23,112],"has":[24],"come":[25],"up":[26],"with":[27,100],"a":[28,124,193],"great":[29],"amount":[30],"of":[31,68,77,87,91,110,120,126,133,141,153,159,183,237,248],"databases":[32,76,127],"and":[33,52,60,74,146,165,176,196,263],"tools":[34],"that":[35,128],"support":[36],"analysts":[37],"in":[38,172,251],"exploring":[39],"interactions":[41,79],"an":[43,115],"integrated":[44],"level":[45],"knowledge":[47],"discovery.":[48],"They":[49],"provide":[50],"predictions":[51],"correlations,":[53],"indicate":[54],"possibilities":[55],"future":[57],"experimental":[58],"research":[59],"fill":[61],"the":[62,66,88,107,118,130,150,181,187,199,202,243],"gaps":[63],"complete":[65],"picture":[67],"biochemical":[69,252],"processes.":[70],"There":[71],"are":[72,257],"numerous":[73],"huge":[75],"used":[80],"gain":[82],"insights":[83],"into":[84],"answering":[85],"some":[86,223],"many":[89],"questions":[90],"biology.":[93],"Many":[94],"computational":[95],"resources":[96,113,143,225],"integrate":[97],"interaction":[98],"data":[99,156,162,166,258],"additional":[101],"information":[102],"molecular":[104],"background.":[105],"However,":[106],"vast":[108],"number":[109],"diverse":[111],"poses":[114],"obstacle":[116],"goal":[119],"understanding.":[121],"We":[122,137],"present":[123],"survey":[125],"enable":[129],"visual":[131,235],"analysis":[132,236,253],"protein":[134],"networks.":[135],"RESULTS:":[136],"selected":[138],"M=10":[139],"out":[140],"N=53":[142],"supporting":[144],"visualization,":[145],"tested":[148],"against":[149],"following":[151],"set":[152],"criteria:":[154],"interoperability,":[155],"integration,":[157],"quantity":[158,182],"possible":[160],"interactions,":[161],"visualization":[163,174,228,249,264],"quality":[164,177],"coverage.":[167],"The":[168,213],"study":[169],"reveals":[170],"differences":[171],"usability,":[173],"features":[175],"as":[178,180],"well":[179],"StringDB":[185],"recommended":[188],"first":[189],"choice.":[190],"CPDB":[191],"presents":[192],"comprehensive":[194,206],"dataset":[195],"IntAct":[197],"lets":[198],"user":[200],"change":[201],"network":[203],"layout.":[204],"A":[205],"comparison":[207],"table":[208,215],"available":[210],"via":[211],"web.":[212],"supplementary":[214],"can":[216,229],"be":[217,230],"accessed":[218],"http://tinyurl.com/PPI-DB-Comparison-2015.":[220],"CONCLUSIONS:":[221],"Only":[222],"web":[224],"featuring":[226],"graph":[227],"successfully":[231],"applied":[232],"interactive":[234,261],"interaction.":[239],"Study":[240],"results":[241],"underline":[242],"necessity":[244],"further":[246],"enhancements":[247],"integration":[250],"tools.":[254],"Identified":[255],"challenges":[256],"comprehensiveness,":[259],"confidence,":[260],"feature":[262],"maturing.":[265]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":6}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
