{"id":"https://openalex.org/W2038840669","doi":"https://doi.org/10.1186/s12859-015-0502-7","title":"SCNVSim: somatic copy number variation and structure variation simulator","display_name":"SCNVSim: somatic copy number variation and structure variation simulator","publication_year":2015,"publication_date":"2015-02-27","ids":{"openalex":"https://openalex.org/W2038840669","doi":"https://doi.org/10.1186/s12859-015-0502-7","mag":"2038840669","pmid":"https://pubmed.ncbi.nlm.nih.gov/25886838"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0502-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0502-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0502-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0502-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046333101","display_name":"Maochun Qin","orcid":null},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Maochun Qin","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Maochun.Qin@RoswellPark.org","Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Maochun.Qin@RoswellPark.org","institution_ids":[]},{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, USA","institution_ids":["https://openalex.org/I1292894508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100686115","display_name":"Biao Liu","orcid":"https://orcid.org/0000-0001-6379-976X"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Biao Liu","raw_affiliation_strings":["Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Biao.Liu@RoswellPark.org","Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, USA"],"affiliations":[{"raw_affiliation_string":"Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Biao.Liu@RoswellPark.org","institution_ids":[]},{"raw_affiliation_string":"Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, USA","institution_ids":["https://openalex.org/I1292894508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027499943","display_name":"Jeffrey M. Conroy","orcid":"https://orcid.org/0000-0003-1764-9706"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey M Conroy","raw_affiliation_strings":["Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Jeffrey.Conroy@RoswellPark.org","Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, USA"],"affiliations":[{"raw_affiliation_string":"Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Jeffrey.Conroy@RoswellPark.org","institution_ids":[]},{"raw_affiliation_string":"Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, USA","institution_ids":["https://openalex.org/I1292894508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059394561","display_name":"Carl Morrison","orcid":"https://orcid.org/0000-0002-3441-8363"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carl D Morrison","raw_affiliation_strings":["Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Carl.Morrison@RoswellPark.org","Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, USA"],"affiliations":[{"raw_affiliation_string":"Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Carl.Morrison@RoswellPark.org","institution_ids":[]},{"raw_affiliation_string":"Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, USA","institution_ids":["https://openalex.org/I1292894508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056585446","display_name":"Qiang Hu","orcid":"https://orcid.org/0000-0002-4090-5539"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiang Hu","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Qiang.Hu@RoswellPark.org","Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Qiang.Hu@RoswellPark.org","institution_ids":[]},{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, USA","institution_ids":["https://openalex.org/I1292894508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102390686","display_name":"Yubo Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yubo Cheng","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Yubo.Cheng@RoswellPark.org","Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Yubo.Cheng@RoswellPark.org","institution_ids":[]},{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, USA","institution_ids":["https://openalex.org/I1292894508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080901605","display_name":"Mitsuko Murakami","orcid":"https://orcid.org/0000-0002-7476-1254"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mitsuko Murakami","raw_affiliation_strings":["Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Mitsuko.Korobkin@RoswellPark.org","Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, USA"],"affiliations":[{"raw_affiliation_string":"Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Mitsuko.Korobkin@RoswellPark.org","institution_ids":[]},{"raw_affiliation_string":"Center for Personalized Medicine, Roswell Park Cancer Institute, Buffalo, USA","institution_ids":["https://openalex.org/I1292894508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061655986","display_name":"Adekunle Odunsi","orcid":null},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adekunle O Odunsi","raw_affiliation_strings":["Department of Gynecologic Oncology, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Kunle.Odunsi@RoswellPark.org","Department of Gynecologic Oncology, Roswell Park Cancer Institute, Buffalo, USA"],"affiliations":[{"raw_affiliation_string":"Department of Gynecologic Oncology, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Kunle.Odunsi@RoswellPark.org","institution_ids":[]},{"raw_affiliation_string":"Department of Gynecologic Oncology, Roswell Park Cancer Institute, Buffalo, USA","institution_ids":["https://openalex.org/I1292894508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081220639","display_name":"Candace S. Johnson","orcid":"https://orcid.org/0000-0002-1211-4692"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Candace S Johnson","raw_affiliation_strings":["Department of Pharmacology and Therapeutics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Candace.Johnson@RoswellPark.org","Department of Pharmacology & Therapeutics, Roswell Park Cancer Institute, Buffalo, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pharmacology and Therapeutics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Candace.Johnson@RoswellPark.org","institution_ids":[]},{"raw_affiliation_string":"Department of Pharmacology & Therapeutics, Roswell Park Cancer Institute, Buffalo, USA","institution_ids":["https://openalex.org/I1292894508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034787932","display_name":"Lei Wei","orcid":"https://orcid.org/0000-0002-1881-8666"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lei Wei","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Lei.Wei@RoswellPark.org","Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Lei.Wei@RoswellPark.org","institution_ids":[]},{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, USA","institution_ids":["https://openalex.org/I1292894508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101450105","display_name":"Song Liu","orcid":"https://orcid.org/0000-0001-9568-6399"},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Song Liu","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Song.Liu@RoswellPark.org","Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Song.Liu@RoswellPark.org","institution_ids":[]},{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, USA","institution_ids":["https://openalex.org/I1292894508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103764292","display_name":"Jianmin Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I1292894508","display_name":"Roswell Park Comprehensive Cancer Center","ror":"https://ror.org/0499dwk57","country_code":"US","type":"facility","lineage":["https://openalex.org/I1292894508"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianmin Wang","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Jianmin.Wang@RoswellPark.org","Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, NY, 14263, USA. Jianmin.Wang@RoswellPark.org","institution_ids":[]},{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Roswell Park Cancer Institute, Buffalo, USA","institution_ids":["https://openalex.org/I1292894508"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5046333101"],"corresponding_institution_ids":["https://openalex.org/I1292894508"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.289,"has_fulltext":true,"cited_by_count":42,"citation_normalized_percentile":{"value":0.78003562,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"16","issue":"1","first_page":"66","last_page":"66"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"Copy-number variation","score":0.8654460310935974},{"id":"https://openalex.org/keywords/loss-of-heterozygosity","display_name":"Loss of heterozygosity","score":0.7351483702659607},{"id":"https://openalex.org/keywords/somatic-cell","display_name":"Somatic cell","score":0.7029021978378296},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6267610788345337},{"id":"https://openalex.org/keywords/structural-variation","display_name":"Structural variation","score":0.5972269177436829},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5158787965774536},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4918096363544464},{"id":"https://openalex.org/keywords/gene-dosage","display_name":"Gene dosage","score":0.4845511019229889},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4686160683631897},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4510185718536377},{"id":"https://openalex.org/keywords/aneuploidy","display_name":"Aneuploidy","score":0.42864862084388733},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4150150716304779},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.15008026361465454},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13786211609840393},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1104174554347992},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.10611748695373535}],"concepts":[{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.8654460310935974},{"id":"https://openalex.org/C143589142","wikidata":"https://www.wikidata.org/wiki/Q2617554","display_name":"Loss of heterozygosity","level":4,"score":0.7351483702659607},{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.7029021978378296},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6267610788345337},{"id":"https://openalex.org/C151020129","wikidata":"https://www.wikidata.org/wiki/Q7625067","display_name":"Structural variation","level":4,"score":0.5972269177436829},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5158787965774536},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4918096363544464},{"id":"https://openalex.org/C55548728","wikidata":"https://www.wikidata.org/wiki/Q1465102","display_name":"Gene dosage","level":4,"score":0.4845511019229889},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4686160683631897},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4510185718536377},{"id":"https://openalex.org/C2779672484","wikidata":"https://www.wikidata.org/wiki/Q529622","display_name":"Aneuploidy","level":4,"score":0.42864862084388733},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4150150716304779},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.15008026361465454},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13786211609840393},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1104174554347992},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.10611748695373535},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000782","descriptor_name":"Aneuploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000782","descriptor_name":"Aneuploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000782","descriptor_name":"Aneuploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005854","descriptor_name":"Germ Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019656","descriptor_name":"Loss of Heterozygosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019656","descriptor_name":"Loss of Heterozygosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019656","descriptor_name":"Loss of Heterozygosity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-015-0502-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0502-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0502-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25886838","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25886838","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3317146","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4349766","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0502-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0502-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0502-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1010591873","display_name":null,"funder_award_id":"P30 CA016056","funder_id":"https://openalex.org/F4320306497","funder_display_name":"Roswell Park Cancer Institute"},{"id":"https://openalex.org/G2792577834","display_name":null,"funder_award_id":"CA016056","funder_id":"https://openalex.org/F4320306497","funder_display_name":"Roswell Park Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320306497","display_name":"Roswell Park Cancer Institute","ror":"https://ror.org/0499dwk57"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2038840669.pdf","grobid_xml":"https://content.openalex.org/works/W2038840669.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1579730317","https://openalex.org/W1965707365","https://openalex.org/W1965856472","https://openalex.org/W2007325090","https://openalex.org/W2010559811","https://openalex.org/W2019199359","https://openalex.org/W2034979835","https://openalex.org/W2041937775","https://openalex.org/W2052142634","https://openalex.org/W2056025993","https://openalex.org/W2060965924","https://openalex.org/W2062819701","https://openalex.org/W2065817684","https://openalex.org/W2082823320","https://openalex.org/W2083870688","https://openalex.org/W2093144236","https://openalex.org/W2096791516","https://openalex.org/W2104195581","https://openalex.org/W2107751484","https://openalex.org/W2119017402","https://openalex.org/W2139993758","https://openalex.org/W2146005104","https://openalex.org/W2149050004","https://openalex.org/W2149681218","https://openalex.org/W2150264767","https://openalex.org/W2152500613","https://openalex.org/W2153027378","https://openalex.org/W2157539385","https://openalex.org/W2161556727","https://openalex.org/W2163938152","https://openalex.org/W2169145121","https://openalex.org/W2255107171"],"related_works":["https://openalex.org/W2131096798","https://openalex.org/W2146512475","https://openalex.org/W1978543818","https://openalex.org/W2982435583","https://openalex.org/W2000671230","https://openalex.org/W2990070345","https://openalex.org/W3134412476","https://openalex.org/W2091911799","https://openalex.org/W2005276393","https://openalex.org/W2358410089"],"abstract_inverted_index":{"SCNVSim":[0],"generates":[1],"the":[2],"genomes":[3],"of":[4,12,17],"a":[5],"cancer":[6,38],"cell":[7],"population":[8],"with":[9],"detailed":[10],"information":[11],"copy":[13],"number":[14],"status,":[15],"loss":[16],"heterozygosity":[18],"(LOH),":[19],"and":[20,29,33],"event":[21],"break":[22],"points,":[23],"which":[24],"is":[25],"essential":[26],"for":[27],"developing":[28],"evaluating":[30],"somatic":[31],"CNV":[32],"SV":[34],"detection":[35],"methods":[36],"in":[37],"genomics":[39],"studies.":[40]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
