{"id":"https://openalex.org/W2042681550","doi":"https://doi.org/10.1186/s12859-015-0464-9","title":"Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores","display_name":"Effective alignment of RNA pseudoknot structures using partition function posterior log-odds scores","publication_year":2015,"publication_date":"2015-02-05","ids":{"openalex":"https://openalex.org/W2042681550","doi":"https://doi.org/10.1186/s12859-015-0464-9","mag":"2042681550","pmid":"https://pubmed.ncbi.nlm.nih.gov/25727492"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0464-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0464-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0464-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0464-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041567418","display_name":"Yang Song","orcid":"https://orcid.org/0000-0003-1283-1672"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yang Song","raw_affiliation_strings":["Bioinformatics Program, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, New Jersey, 07102, USA","Bioinformatics Program, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Program, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, New Jersey, 07102, USA","institution_ids":["https://openalex.org/I118118575"]},{"raw_affiliation_string":"Bioinformatics Program, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016680901","display_name":"Lei Hua","orcid":"https://orcid.org/0000-0002-8452-536X"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lei Hua","raw_affiliation_strings":["Bioinformatics Program, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, New Jersey, 07102, USA","Bioinformatics Program, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Program, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, New Jersey, 07102, USA","institution_ids":["https://openalex.org/I118118575"]},{"raw_affiliation_string":"Bioinformatics Program, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010562576","display_name":"Bruce A. Shapiro","orcid":null},"institutions":[{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210149717","display_name":"Center for Cancer Research","ror":"https://ror.org/05bjen692","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bruce A Shapiro","raw_affiliation_strings":["Computational RNA Structure Group, Center for Cancer Research, Basic Research Laboratory, National Cancer Institute, Frederick, Maryland, 21702, USA","Computational RNA Structure Group, Center for Cancer Research, Basic Research Laboratory, National Cancer Institute, Frederick, USA"],"affiliations":[{"raw_affiliation_string":"Computational RNA Structure Group, Center for Cancer Research, Basic Research Laboratory, National Cancer Institute, Frederick, Maryland, 21702, USA","institution_ids":["https://openalex.org/I4210140884","https://openalex.org/I4210149717"]},{"raw_affiliation_string":"Computational RNA Structure Group, Center for Cancer Research, Basic Research Laboratory, National Cancer Institute, Frederick, USA","institution_ids":["https://openalex.org/I4210140884","https://openalex.org/I4210149717"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065109688","display_name":"Jason T. Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason TL Wang","raw_affiliation_strings":["Bioinformatics Program, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, New Jersey, 07102, USA","Bioinformatics Program, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, USA"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Program, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, New Jersey, 07102, USA","institution_ids":["https://openalex.org/I118118575"]},{"raw_affiliation_string":"Bioinformatics Program, Department of Computer Science, New Jersey Institute of Technology, University Heights, Newark, USA","institution_ids":["https://openalex.org/I118118575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5041567418"],"corresponding_institution_ids":["https://openalex.org/I118118575"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.3018,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.6189002,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"16","issue":"1","first_page":"39","last_page":"39"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pseudoknot","display_name":"Pseudoknot","score":0.9683874249458313},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6262708306312561},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.6122095584869385},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.5842368602752686},{"id":"https://openalex.org/keywords/structural-alignment","display_name":"Structural alignment","score":0.5451388359069824},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.49112817645072937},{"id":"https://openalex.org/keywords/odds","display_name":"Odds","score":0.4411133825778961},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4356440603733063},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.4275517165660858},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3643551468849182},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36410626769065857},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3482411503791809},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18834030628204346},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1565077304840088},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11398223042488098}],"concepts":[{"id":"https://openalex.org/C105130999","wikidata":"https://www.wikidata.org/wiki/Q414976","display_name":"Pseudoknot","level":4,"score":0.9683874249458313},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6262708306312561},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.6122095584869385},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.5842368602752686},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.5451388359069824},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.49112817645072937},{"id":"https://openalex.org/C143095724","wikidata":"https://www.wikidata.org/wiki/Q515895","display_name":"Odds","level":3,"score":0.4411133825778961},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4356440603733063},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.4275517165660858},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3643551468849182},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36410626769065857},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3482411503791809},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18834030628204346},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1565077304840088},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11398223042488098},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C151956035","wikidata":"https://www.wikidata.org/wiki/Q1132755","display_name":"Logistic regression","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020029","descriptor_name":"Base Pairing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020029","descriptor_name":"Base Pairing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020029","descriptor_name":"Base Pairing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020137","descriptor_name":"Base Pair Mismatch","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020137","descriptor_name":"Base Pair Mismatch","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020137","descriptor_name":"Base Pair Mismatch","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/s12859-015-0464-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0464-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0464-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25727492","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25727492","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3304146","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4339682","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0464-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0464-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0464-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2691117333","display_name":"III-CXT: Structure Comparison and Mining for RNA Genomics","funder_award_id":"0707571","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7885600389","display_name":null,"funder_award_id":"IIS-0707571","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2042681550.pdf","grobid_xml":"https://content.openalex.org/works/W2042681550.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W1557536303","https://openalex.org/W1775447850","https://openalex.org/W1950410402","https://openalex.org/W2007550449","https://openalex.org/W2007644443","https://openalex.org/W2008288996","https://openalex.org/W2011078969","https://openalex.org/W2018216725","https://openalex.org/W2037722828","https://openalex.org/W2040220669","https://openalex.org/W2045864964","https://openalex.org/W2049811404","https://openalex.org/W2052812651","https://openalex.org/W2052841473","https://openalex.org/W2059810773","https://openalex.org/W2067800200","https://openalex.org/W2071749306","https://openalex.org/W2074882547","https://openalex.org/W2083994960","https://openalex.org/W2088528526","https://openalex.org/W2091705944","https://openalex.org/W2098431846","https://openalex.org/W2102225325","https://openalex.org/W2103250001","https://openalex.org/W2105518499","https://openalex.org/W2111491633","https://openalex.org/W2111773652","https://openalex.org/W2116686937","https://openalex.org/W2117552736","https://openalex.org/W2119863995","https://openalex.org/W2120834204","https://openalex.org/W2121691652","https://openalex.org/W2122035121","https://openalex.org/W2122558818","https://openalex.org/W2128356721","https://openalex.org/W2130479394","https://openalex.org/W2134874046","https://openalex.org/W2140190241","https://openalex.org/W2140872496","https://openalex.org/W2141411672","https://openalex.org/W2141494692","https://openalex.org/W2144366714","https://openalex.org/W2146416885","https://openalex.org/W2151866039","https://openalex.org/W2152635855","https://openalex.org/W2153731228","https://openalex.org/W2155140332","https://openalex.org/W2155858493","https://openalex.org/W2157921567","https://openalex.org/W2158031555","https://openalex.org/W2158381555","https://openalex.org/W2162224067","https://openalex.org/W2163798335","https://openalex.org/W2164230672","https://openalex.org/W2164610350","https://openalex.org/W2166706771","https://openalex.org/W2167040380","https://openalex.org/W2169185001","https://openalex.org/W2169751581","https://openalex.org/W2170157200","https://openalex.org/W2186428165","https://openalex.org/W2330406605","https://openalex.org/W2803927613","https://openalex.org/W4251866352"],"related_works":["https://openalex.org/W2159621058","https://openalex.org/W2148725278","https://openalex.org/W2954092143","https://openalex.org/W1583489351","https://openalex.org/W1999060916","https://openalex.org/W2135373808","https://openalex.org/W1997175692","https://openalex.org/W2105081912","https://openalex.org/W1837794086","https://openalex.org/W2055553856"],"abstract_inverted_index":{"The":[0],"method":[1],"described":[2],"here":[3],"has":[4],"been":[5],"implemented":[6],"in":[7,29,43,50],"a":[8,34,40],"tool":[9,35],"named":[10],"RKalign,":[11],"which":[12],"is":[13],"freely":[14],"accessible":[15],"on":[16],"the":[17],"Internet.":[18],"As":[19],"more":[20,22],"and":[21,27,48],"pseudoknots":[23],"are":[24],"revealed,":[25],"collected":[26],"stored":[28],"public":[30],"databases,":[31],"we":[32],"anticipate":[33],"like":[36],"RKalign":[37],"will":[38],"play":[39],"significant":[41],"role":[42],"data":[44],"comparison,":[45],"annotation,":[46],"analysis,":[47],"retrieval":[49],"these":[51],"databases.":[52]},"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}