{"id":"https://openalex.org/W1970594638","doi":"https://doi.org/10.1186/s12859-015-0451-1","title":"An algorithm to enumerate all possible protein conformations verifying a set of distance constraints","display_name":"An algorithm to enumerate all possible protein conformations verifying a set of distance constraints","publication_year":2015,"publication_date":"2015-01-27","ids":{"openalex":"https://openalex.org/W1970594638","doi":"https://doi.org/10.1186/s12859-015-0451-1","mag":"1970594638","pmid":"https://pubmed.ncbi.nlm.nih.gov/25627244"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-015-0451-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0451-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0451-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0451-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087264518","display_name":"Andrea Cassioli","orcid":null},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Andrea Cassioli","raw_affiliation_strings":["LIX, Ecole Polytechnique, Palaiseau, 91128, France. cassioliandre@gmail.com","(LIX, Ecole Polytechnique, Palaiseau, France)"],"affiliations":[{"raw_affiliation_string":"LIX, Ecole Polytechnique, Palaiseau, 91128, France. cassioliandre@gmail.com","institution_ids":[]},{"raw_affiliation_string":"(LIX, Ecole Polytechnique, Palaiseau, France)","institution_ids":["https://openalex.org/I142476485"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040815003","display_name":"Benjamin Bardiaux","orcid":"https://orcid.org/0000-0003-4014-9195"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Benjamin Bardiaux","raw_affiliation_strings":["CNRS UMR3528, 25, rue du Dr Roux, Paris, 75015, France. benjamin.bardiaux@pasteur.fr","Institut Pasteur, Structural Bioinformatics Unit, 25, rue du Dr Roux, Paris, 75015, France. benjamin.bardiaux@pasteur.fr","Institut Pasteur, Structural Bioinformatics Unit, Paris, France","CNRS UMR3528, Paris, France"],"affiliations":[{"raw_affiliation_string":"CNRS UMR3528, 25, rue du Dr Roux, Paris, 75015, France. benjamin.bardiaux@pasteur.fr","institution_ids":[]},{"raw_affiliation_string":"Institut Pasteur, Structural Bioinformatics Unit, 25, rue du Dr Roux, Paris, 75015, France. benjamin.bardiaux@pasteur.fr","institution_ids":[]},{"raw_affiliation_string":"Institut Pasteur, Structural Bioinformatics Unit, Paris, France","institution_ids":["https://openalex.org/I157536573"]},{"raw_affiliation_string":"CNRS UMR3528, Paris, France","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034682723","display_name":"Guillaume Bouvier","orcid":"https://orcid.org/0000-0003-2792-6084"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Bouvier","raw_affiliation_strings":["CNRS UMR3528, 25, rue du Dr Roux, Paris, 75015, France. guillaume.bouvier@pasteur.fr","Institut Pasteur, Structural Bioinformatics Unit, 25, rue du Dr Roux, Paris, 75015, France. guillaume.bouvier@pasteur.fr","Institut Pasteur, Structural Bioinformatics Unit, Paris, France","CNRS UMR3528, Paris, France"],"affiliations":[{"raw_affiliation_string":"CNRS UMR3528, 25, rue du Dr Roux, Paris, 75015, France. guillaume.bouvier@pasteur.fr","institution_ids":[]},{"raw_affiliation_string":"Institut Pasteur, Structural Bioinformatics Unit, 25, rue du Dr Roux, Paris, 75015, France. guillaume.bouvier@pasteur.fr","institution_ids":[]},{"raw_affiliation_string":"Institut Pasteur, Structural Bioinformatics Unit, Paris, France","institution_ids":["https://openalex.org/I157536573"]},{"raw_affiliation_string":"CNRS UMR3528, Paris, France","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049200982","display_name":"Antonio Mucherino","orcid":"https://orcid.org/0000-0003-1824-3724"},"institutions":[{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Antonio Mucherino","raw_affiliation_strings":["Universit\u00e9 de Rennes-I, Rennes, France. antonio.mucherino@irisa.fr","Universit\u00e9 de Rennes I, Rennes, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Rennes-I, Rennes, France. antonio.mucherino@irisa.fr","institution_ids":[]},{"raw_affiliation_string":"Universit\u00e9 de Rennes I, Rennes, France","institution_ids":["https://openalex.org/I56067802"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038095814","display_name":"Rafael Alves","orcid":"https://orcid.org/0000-0002-3171-9339"},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Rafael Alves","raw_affiliation_strings":["LIX, Ecole Polytechnique, Palaiseau, 91128, France. rafaelsoalves@uol.com.br","(LIX, Ecole Polytechnique, Palaiseau, France)"],"affiliations":[{"raw_affiliation_string":"LIX, Ecole Polytechnique, Palaiseau, 91128, France. rafaelsoalves@uol.com.br","institution_ids":[]},{"raw_affiliation_string":"(LIX, Ecole Polytechnique, Palaiseau, France)","institution_ids":["https://openalex.org/I142476485"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046138085","display_name":"Leo Liberti","orcid":"https://orcid.org/0000-0003-3139-6821"},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]},{"id":"https://openalex.org/I4210139461","display_name":"Laboratoire d'Informatique de l'\u00c9cole Polytechnique","ror":"https://ror.org/04afed728","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I142476485","https://openalex.org/I4210139461","https://openalex.org/I4210145102","https://openalex.org/I4210159245"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Leo Liberti","raw_affiliation_strings":["IBM TJ Watson Research Center, NY Yorktown Heights, 10598, USA. liberti@lix.polytechnique.fr","LIX, Ecole Polytechnique, Palaiseau, 91128, France. liberti@lix.polytechnique.fr","LIX, Ecole Polytechnique, Palaiseau, France","IBM TJ Watson Research Center, NY Yorktown Heights, USA"],"affiliations":[{"raw_affiliation_string":"IBM TJ Watson Research Center, NY Yorktown Heights, 10598, USA. liberti@lix.polytechnique.fr","institution_ids":[]},{"raw_affiliation_string":"LIX, Ecole Polytechnique, Palaiseau, 91128, France. liberti@lix.polytechnique.fr","institution_ids":[]},{"raw_affiliation_string":"LIX, Ecole Polytechnique, Palaiseau, France","institution_ids":["https://openalex.org/I4210139461","https://openalex.org/I142476485"]},{"raw_affiliation_string":"IBM TJ Watson Research Center, NY Yorktown Heights, USA","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024276029","display_name":"Micha\u00ebl Nilges","orcid":"https://orcid.org/0000-0002-1451-8092"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Michael Nilges","raw_affiliation_strings":["CNRS UMR3528, 25, rue du Dr Roux, Paris, 75015, France. michael.nilges@pasteur.fr","Institut Pasteur, Structural Bioinformatics Unit, 25, rue du Dr Roux, Paris, 75015, France. michael.nilges@pasteur.fr","Institut Pasteur, Structural Bioinformatics Unit, Paris, France","CNRS UMR3528, Paris, France"],"affiliations":[{"raw_affiliation_string":"CNRS UMR3528, 25, rue du Dr Roux, Paris, 75015, France. michael.nilges@pasteur.fr","institution_ids":[]},{"raw_affiliation_string":"Institut Pasteur, Structural Bioinformatics Unit, 25, rue du Dr Roux, Paris, 75015, France. michael.nilges@pasteur.fr","institution_ids":[]},{"raw_affiliation_string":"Institut Pasteur, Structural Bioinformatics Unit, Paris, France","institution_ids":["https://openalex.org/I157536573"]},{"raw_affiliation_string":"CNRS UMR3528, Paris, France","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076792725","display_name":"Carlile Lavor","orcid":"https://orcid.org/0000-0002-8105-3627"},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Carlile Lavor","raw_affiliation_strings":["University of Campinas (IMECC-UNICAMP), Campinas-SP, 13083-859, Brasil. clavor@ime.unicamp.br","University of Campinas (IMECC-UNICAMP), Campinas-SP, Brasil"],"affiliations":[{"raw_affiliation_string":"University of Campinas (IMECC-UNICAMP), Campinas-SP, 13083-859, Brasil. clavor@ime.unicamp.br","institution_ids":[]},{"raw_affiliation_string":"University of Campinas (IMECC-UNICAMP), Campinas-SP, Brasil","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048175686","display_name":"Th\u00e9r\u00e8se E. Malliavin","orcid":"https://orcid.org/0000-0002-3276-3366"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"funder","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Th\u00e9r\u00e8se E Malliavin","raw_affiliation_strings":["CNRS UMR3528, 25, rue du Dr Roux, Paris, 75015, France. therese.malliavin@pasteur.fr","Institut Pasteur, Structural Bioinformatics Unit, 25, rue du Dr Roux, Paris, 75015, France. therese.malliavin@pasteur.fr","Institut Pasteur, Structural Bioinformatics Unit, Paris, France","CNRS UMR3528, Paris, France"],"affiliations":[{"raw_affiliation_string":"CNRS UMR3528, 25, rue du Dr Roux, Paris, 75015, France. therese.malliavin@pasteur.fr","institution_ids":[]},{"raw_affiliation_string":"Institut Pasteur, Structural Bioinformatics Unit, 25, rue du Dr Roux, Paris, 75015, France. therese.malliavin@pasteur.fr","institution_ids":[]},{"raw_affiliation_string":"Institut Pasteur, Structural Bioinformatics Unit, Paris, France","institution_ids":["https://openalex.org/I157536573"]},{"raw_affiliation_string":"CNRS UMR3528, Paris, France","institution_ids":["https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5087264518"],"corresponding_institution_ids":["https://openalex.org/I142476485"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":9.096,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.98337098,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"16","issue":"1","first_page":"23","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11697","display_name":"Numerical Methods and Algorithms","score":0.9375,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11697","display_name":"Numerical Methods and Algorithms","score":0.9375,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9236999750137329,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11435","display_name":"Polynomial and algebraic computation","score":0.92330002784729,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6724411249160767},{"id":"https://openalex.org/keywords/pruning","display_name":"Pruning","score":0.5985113382339478},{"id":"https://openalex.org/keywords/simulated-annealing","display_name":"Simulated annealing","score":0.58356773853302},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5815790295600891},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5509082078933716},{"id":"https://openalex.org/keywords/discretization","display_name":"Discretization","score":0.5153645873069763},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4643322229385376},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.45041534304618835},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.441700279712677},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.314372181892395},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.15946969389915466},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.09304940700531006},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08000290393829346}],"concepts":[{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6724411249160767},{"id":"https://openalex.org/C108010975","wikidata":"https://www.wikidata.org/wiki/Q500094","display_name":"Pruning","level":2,"score":0.5985113382339478},{"id":"https://openalex.org/C126980161","wikidata":"https://www.wikidata.org/wiki/Q863783","display_name":"Simulated annealing","level":2,"score":0.58356773853302},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5815790295600891},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5509082078933716},{"id":"https://openalex.org/C73000952","wikidata":"https://www.wikidata.org/wiki/Q17007827","display_name":"Discretization","level":2,"score":0.5153645873069763},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4643322229385376},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.45041534304618835},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.441700279712677},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.314372181892395},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.15946969389915466},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.09304940700531006},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08000290393829346},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-015-0451-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0451-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0451-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25627244","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25627244","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:repositorio.unicamp.br:REPOSIP/236011","is_oa":true,"landing_page_url":"http://repositorio.unicamp.br/jspui/handle/REPOSIP/236011","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PubMed","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:HAL:pasteur-01120652v1","is_oa":false,"landing_page_url":"https://pasteur.hal.science/pasteur-01120652","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2014, 16 (1), pp.23. ⟨10.1186/s12859-015-0451-1⟩","raw_type":"Journal articles"},{"id":"pmh:oai:americanae.aecid.es:2840318","is_oa":true,"landing_page_url":"https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0451-1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PUBMED","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3349830","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4384350","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-015-0451-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-015-0451-1","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-015-0451-1","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3031847914","display_name":null,"funder_award_id":"294809","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3601516360","display_name":null,"funder_award_id":"Brazil","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G5079005330","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322025","funder_display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico"},{"id":"https://openalex.org/G6905143839","display_name":null,"funder_award_id":"FP7-IDEAS-ERC 294809","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7649677718","display_name":null,"funder_award_id":"FP7-IDEAS-ERC 294809","funder_id":"https://openalex.org/F4320338352","funder_display_name":"FP7 Ideas: European Research Council"},{"id":"https://openalex.org/G7758152977","display_name":null,"funder_award_id":"support","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"},{"id":"https://openalex.org/G8963522230","display_name":null,"funder_award_id":"294809","funder_id":"https://openalex.org/F4320338352","funder_display_name":"FP7 Ideas: European Research Council"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320338352","display_name":"FP7 Ideas: European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1970594638.pdf","grobid_xml":"https://content.openalex.org/works/W1970594638.grobid-xml"},"referenced_works_count":83,"referenced_works":["https://openalex.org/W199186236","https://openalex.org/W211259837","https://openalex.org/W1480928214","https://openalex.org/W1557906385","https://openalex.org/W1572663059","https://openalex.org/W1582520000","https://openalex.org/W1590020374","https://openalex.org/W1598339794","https://openalex.org/W1598340254","https://openalex.org/W1600696529","https://openalex.org/W1674342371","https://openalex.org/W1679913846","https://openalex.org/W1836247468","https://openalex.org/W1968569380","https://openalex.org/W1968609670","https://openalex.org/W1972865089","https://openalex.org/W1973255639","https://openalex.org/W1984522181","https://openalex.org/W1986191025","https://openalex.org/W1986413623","https://openalex.org/W1987458603","https://openalex.org/W1996747085","https://openalex.org/W1997577150","https://openalex.org/W2003250847","https://openalex.org/W2007572995","https://openalex.org/W2008708467","https://openalex.org/W2014418975","https://openalex.org/W2017850362","https://openalex.org/W2019108217","https://openalex.org/W2021534482","https://openalex.org/W2030689403","https://openalex.org/W2034762747","https://openalex.org/W2052531047","https://openalex.org/W2052933818","https://openalex.org/W2057664120","https://openalex.org/W2063180750","https://openalex.org/W2070122352","https://openalex.org/W2072576317","https://openalex.org/W2072732271","https://openalex.org/W2081415437","https://openalex.org/W2085565764","https://openalex.org/W2088861915","https://openalex.org/W2090622132","https://openalex.org/W2090998502","https://openalex.org/W2092233154","https://openalex.org/W2093446335","https://openalex.org/W2097870634","https://openalex.org/W2100266218","https://openalex.org/W2101712920","https://openalex.org/W2105421919","https://openalex.org/W2110543129","https://openalex.org/W2112418305","https://openalex.org/W2114520383","https://openalex.org/W2115838194","https://openalex.org/W2116275717","https://openalex.org/W2118245746","https://openalex.org/W2125003003","https://openalex.org/W2128409331","https://openalex.org/W2131573942","https://openalex.org/W2132592018","https://openalex.org/W2135338948","https://openalex.org/W2138357403","https://openalex.org/W2139783945","https://openalex.org/W2146270091","https://openalex.org/W2147318792","https://openalex.org/W2149280798","https://openalex.org/W2150399099","https://openalex.org/W2152268866","https://openalex.org/W2158064928","https://openalex.org/W2159300273","https://openalex.org/W2162215949","https://openalex.org/W2165046172","https://openalex.org/W2336259629","https://openalex.org/W2401285145","https://openalex.org/W2770560911","https://openalex.org/W2790191430","https://openalex.org/W2890534020","https://openalex.org/W2907849471","https://openalex.org/W2953018250","https://openalex.org/W4229666556","https://openalex.org/W4240501996","https://openalex.org/W4245176872","https://openalex.org/W4254196867"],"related_works":["https://openalex.org/W1492103595","https://openalex.org/W2364741597","https://openalex.org/W1864774435","https://openalex.org/W946352265","https://openalex.org/W3020787026","https://openalex.org/W2334479858","https://openalex.org/W2799209613","https://openalex.org/W4285312748","https://openalex.org/W3203767529","https://openalex.org/W2157743338"],"abstract_inverted_index":{"We":[0],"described":[1],"the":[2,21],"new":[3],"algorithm":[4,25],"iBP":[5,26],"to":[6],"generate":[7],"protein":[8],"conformations":[9],"satisfying":[10],"distance":[11],"constraints,":[12],"that":[13],"would":[14],"potentially":[15],"allows":[16],"a":[17],"systematic":[18],"exploration":[19],"of":[20],"conformational":[22],"space.":[23],"The":[24],"has":[27],"been":[28],"applied":[29],"on":[30],"three":[31],"\u03b1-helical":[32],"peptides.":[33]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}