{"id":"https://openalex.org/W1985560762","doi":"https://doi.org/10.1186/s12859-014-0438-3","title":"Fast inexact mapping using advanced tree exploration on backward search methods","display_name":"Fast inexact mapping using advanced tree exploration on backward search methods","publication_year":2015,"publication_date":"2015-01-27","ids":{"openalex":"https://openalex.org/W1985560762","doi":"https://doi.org/10.1186/s12859-014-0438-3","mag":"1985560762","pmid":"https://pubmed.ncbi.nlm.nih.gov/25626517"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-014-0438-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0438-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0438-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0438-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076573756","display_name":"Jos\u00e9 Salavert Torres","orcid":"https://orcid.org/0000-0001-6309-4401"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 Salavert","raw_affiliation_strings":["GRyCAP department of I3M, Universitat Polit\u00e8cnica de Val\u00e8ncia, Building 8B, Camino de vera s/n, Valencia, 46022, Spain. josator@i3m.upv.es","GRyCAP department of I3M, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GRyCAP department of I3M, Universitat Polit\u00e8cnica de Val\u00e8ncia, Building 8B, Camino de vera s/n, Valencia, 46022, Spain. josator@i3m.upv.es","institution_ids":["https://openalex.org/I60053951"]},{"raw_affiliation_string":"GRyCAP department of I3M, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039819696","display_name":"Andr\u00e9s E. Tom\u00e1s","orcid":"https://orcid.org/0000-0003-3969-2174"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Andr\u00e9s Tom\u00e1s","raw_affiliation_strings":["GRyCAP department of I3M, Universitat Polit\u00e8cnica de Val\u00e8ncia, Building 8B, Camino de vera s/n, Valencia, 46022, Spain. antodo@i3m.upv.es","GRyCAP department of I3M, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GRyCAP department of I3M, Universitat Polit\u00e8cnica de Val\u00e8ncia, Building 8B, Camino de vera s/n, Valencia, 46022, Spain. antodo@i3m.upv.es","institution_ids":["https://openalex.org/I60053951"]},{"raw_affiliation_string":"GRyCAP department of I3M, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005495520","display_name":"Joaqu\u00edn T\u00e1rraga","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Joaqu\u00edn T\u00e1rraga","raw_affiliation_strings":["Bioinformatics department of Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Autopista del Saler 16, Valencia, 46012, Spain. jtarraga@cipf.es","Bioinformatics department of Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics department of Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Autopista del Saler 16, Valencia, 46012, Spain. jtarraga@cipf.es","institution_ids":["https://openalex.org/I4210165109"]},{"raw_affiliation_string":"Bioinformatics department of Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068938981","display_name":"Ignacio Medina","orcid":"https://orcid.org/0000-0003-0095-670X"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ignacio Medina","raw_affiliation_strings":["Bioinformatics department of Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Autopista del Saler 16, Valencia, 46012, Spain. imedina@cipf.es","Bioinformatics department of Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics department of Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Autopista del Saler 16, Valencia, 46012, Spain. imedina@cipf.es","institution_ids":["https://openalex.org/I4210165109"]},{"raw_affiliation_string":"Bioinformatics department of Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074140420","display_name":"Joaqu\u0131\u0301n Dopazo","orcid":"https://orcid.org/0000-0003-3318-120X"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Joaqu\u00edn Dopazo","raw_affiliation_strings":["Bioinformatics department of Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Autopista del Saler 16, Valencia, 46012, Spain. jdopazo@cipf.es","Bioinformatics department of Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics department of Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Autopista del Saler 16, Valencia, 46012, Spain. jdopazo@cipf.es","institution_ids":["https://openalex.org/I4210165109"]},{"raw_affiliation_string":"Bioinformatics department of Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069265961","display_name":"Ign\u00e1cio Blanquer","orcid":"https://orcid.org/0000-0003-1692-8922"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ignacio Blanquer","raw_affiliation_strings":["GRyCAP department of I3M, Universitat Polit\u00e8cnica de Val\u00e8ncia, Building 8B, Camino de vera s/n, Valencia, 46022, Spain. iblanque@dsic.upv.es","GRyCAP department of I3M, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GRyCAP department of I3M, Universitat Polit\u00e8cnica de Val\u00e8ncia, Building 8B, Camino de vera s/n, Valencia, 46022, Spain. iblanque@dsic.upv.es","institution_ids":["https://openalex.org/I60053951"]},{"raw_affiliation_string":"GRyCAP department of I3M, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5076573756"],"corresponding_institution_ids":["https://openalex.org/I60053951"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.4134,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.62515288,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"16","issue":"1","first_page":"18","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.595300018787384,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.595300018787384,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.31279999017715454,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.0210999995470047,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5990341901779175},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5314069390296936},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4981234073638916},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4475751221179962},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33135294914245605},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28288865089416504},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17345958948135376},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10493239760398865},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08844509720802307},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.07172214984893799}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5990341901779175},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5314069390296936},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4981234073638916},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4475751221179962},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33135294914245605},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28288865089416504},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17345958948135376},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10493239760398865},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08844509720802307},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.07172214984893799},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-014-0438-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0438-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0438-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25626517","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25626517","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3349825","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4384339","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:riunet.upv.es:10251/52360","is_oa":true,"landing_page_url":"http://hdl.handle.net/10251/52360","pdf_url":null,"source":{"id":"https://openalex.org/S4306400639","display_name":"RiuNet (Universitat Polit\u00e8cnica de Val\u00e8ncia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-014-0438-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0438-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0438-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3597827360","display_name":null,"funder_award_id":"PAID06-11","funder_id":"https://openalex.org/F4320334905","funder_display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia"}],"funders":[{"id":"https://openalex.org/F4320334905","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1985560762.pdf","grobid_xml":"https://content.openalex.org/works/W1985560762.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1495524224","https://openalex.org/W1506134992","https://openalex.org/W1532491137","https://openalex.org/W1543263356","https://openalex.org/W1944059350","https://openalex.org/W1976682045","https://openalex.org/W1979321046","https://openalex.org/W1984656893","https://openalex.org/W2009570821","https://openalex.org/W2015831381","https://openalex.org/W2021770717","https://openalex.org/W2025648894","https://openalex.org/W2031445984","https://openalex.org/W2037748100","https://openalex.org/W2046038806","https://openalex.org/W2068448872","https://openalex.org/W2087064593","https://openalex.org/W2093931624","https://openalex.org/W2097341408","https://openalex.org/W2098291606","https://openalex.org/W2098882782","https://openalex.org/W2103441770","https://openalex.org/W2117683095","https://openalex.org/W2119279650","https://openalex.org/W2124985265","https://openalex.org/W2130181449","https://openalex.org/W2139523073","https://openalex.org/W2142619120","https://openalex.org/W2143531254","https://openalex.org/W2158322625","https://openalex.org/W2158874082","https://openalex.org/W2159647614","https://openalex.org/W2161488606","https://openalex.org/W2170551349","https://openalex.org/W2170899819","https://openalex.org/W2914940273","https://openalex.org/W4245668478","https://openalex.org/W4247053599","https://openalex.org/W4301937606"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"BACKGROUND:":[0],"Short":[1],"sequence":[2,163,178,208],"mapping":[3,71,164],"methods":[4],"for":[5,77,200,218],"Next":[6],"Generation":[7],"Sequencing":[8],"consist":[9],"on":[10,21,30,74,145,223],"a":[11,89,119,131,161,173],"combination":[12],"of":[13,139,205],"seeding":[14,26,203],"techniques":[15],"followed":[16],"by":[17,135],"local":[18],"alignment":[19,192],"based":[20,29,73],"dynamic":[22],"programming":[23],"approaches.":[24],"Most":[25],"algorithms":[27,51,94],"are":[28],"backward":[31,49],"search":[32,50,78],"alignment,":[33],"using":[34],"the":[35,39,127,137,146,148,166,184,202],"Burrows":[36],"Wheeler":[37],"Transform,":[38],"Ferragina":[40],"and":[41,103],"Manzini":[42],"Index":[43],"or":[44],"Suffix":[45],"Arrays.":[46],"All":[47],"these":[48],"have":[52],"excellent":[53],"performance,":[54],"but":[55],"their":[56],"computational":[57],"cost":[58],"highly":[59],"increases":[60],"when":[61,95],"allowing":[62,96],"errors.":[63],"In":[64,124,210],"this":[65,125,195],"paper,":[66],"we":[67],"discuss":[68],"an":[69,212],"inexact":[70],"algorithm":[72,87,106,128,168,196],"pruning":[75],"strategies":[76],"tree":[79],"exploration":[80],"over":[81,92],"genomic":[82],"data.":[83],"RESULTS:":[84],"The":[85],"proposed":[86,167],"achieves":[88],"13x":[90],"speed-up":[91],"similar":[93],"6":[97],"base":[98],"errors,":[99],"including":[100],"insertions,":[101],"deletions":[102],"mismatches.":[104],"This":[105,180],"can":[107],"deal":[108],"with":[109,113,220],"400":[110],"bps":[111],"reads":[112,140,186],"up":[114],"to":[115,141,176,187],"9":[116],"errors":[117],"in":[118],"high":[120],"quality":[121],"Illumina":[122],"dataset.":[123],"example,":[126],"works":[129],"as":[130,160,172],"preprocessor":[132],"that":[133],"reduces":[134,183],"55%":[136],"number":[138,185],"be":[142,170,188,198],"aligned.":[143],"Depending":[144],"aligner":[147],"overall":[149,191],"execution":[150],"time":[151],"is":[152],"reduced":[153],"between":[154],"20-40%.":[155],"CONCLUSIONS:":[156],"Although":[157],"not":[158],"intended":[159],"complete":[162],"tool,":[165],"could":[169,197],"used":[171,199],"preprocessing":[174],"step":[175,181,204],"modern":[177],"mappers.":[179,209],"significantly":[182],"aligned,":[189],"accelerating":[190,201],"time.":[193],"Furthermore,":[194],"already":[206],"available":[207],"addition,":[211],"out-of-core":[213],"index":[214],"has":[215],"been":[216],"implemented":[217],"working":[219],"large":[221],"genomes":[222],"systems":[224],"without":[225],"expensive":[226],"memory":[227],"configurations.":[228]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2}],"updated_date":"2026-08-02T14:50:37.381335","created_date":"2025-10-10T00:00:00"}