{"id":"https://openalex.org/W2172241314","doi":"https://doi.org/10.1186/s12859-014-0427-6","title":"WEBnm@ v2.0: Web server and services for comparing protein flexibility","display_name":"WEBnm@ v2.0: Web server and services for comparing protein flexibility","publication_year":2014,"publication_date":"2014-12-01","ids":{"openalex":"https://openalex.org/W2172241314","doi":"https://doi.org/10.1186/s12859-014-0427-6","mag":"2172241314","pmid":"https://pubmed.ncbi.nlm.nih.gov/25547242"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-014-0427-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0427-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0427-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0427-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064384115","display_name":"Sandhya P. Tiwari","orcid":"https://orcid.org/0000-0002-0747-3826"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Sandhya P Tiwari","raw_affiliation_strings":["Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. Sandhya.Tiwari@mbi.uib.no","Department of Molecular Biology, University of Bergen, Bergen, Norway. Sandhya.Tiwari@mbi.uib.no","Department of Molecular Biology, University of Bergen, Bergen, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. Sandhya.Tiwari@mbi.uib.no","institution_ids":[]},{"raw_affiliation_string":"Department of Molecular Biology, University of Bergen, Bergen, Norway. Sandhya.Tiwari@mbi.uib.no","institution_ids":[]},{"raw_affiliation_string":"Department of Molecular Biology, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081877565","display_name":"Edvin Fuglebakk","orcid":"https://orcid.org/0000-0002-3192-6768"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Edvin Fuglebakk","raw_affiliation_strings":["Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. Edvin.Fuglebakk@mbi.uib.no","Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. Edvin.Fuglebakk@mbi.uib.no","institution_ids":[]},{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067478557","display_name":"Siv Midtun Hollup","orcid":null},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Siv M Hollup","raw_affiliation_strings":["Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. siv.hollup@gmail.com","Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. siv.hollup@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032711509","display_name":"Lars Skj\u00e6rven","orcid":"https://orcid.org/0000-0002-8176-4891"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Lars Skj\u00e6rven","raw_affiliation_strings":["Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. Lars.Skjarven@biomed.uib.no","Department of Biomedicine, University of Bergen, Bergen, Norway. Lars.Skjarven@biomed.uib.no","Department of Biomedicine, University of Bergen, Bergen, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. Lars.Skjarven@biomed.uib.no","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedicine, University of Bergen, Bergen, Norway. Lars.Skjarven@biomed.uib.no","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedicine, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059832457","display_name":"Tristan Cragnolini","orcid":"https://orcid.org/0000-0001-6917-7056"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Tristan Cragnolini","raw_affiliation_strings":["Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. tristan.cragnolini@gmail.com","Department of Molecular Biology, University of Bergen, Bergen, Norway. tristan.cragnolini@gmail.com","Present address: University Chemical Laboratories, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK. tristan.cragnolini@gmail.com","Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. tristan.cragnolini@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Department of Molecular Biology, University of Bergen, Bergen, Norway. tristan.cragnolini@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Present address: University Chemical Laboratories, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK. tristan.cragnolini@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060313147","display_name":"Svenn Helge Grindhaug","orcid":null},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Svenn H Grindhaug","raw_affiliation_strings":["Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. svennhg@gmail.com","Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. svennhg@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065292448","display_name":"Kidane Tekle","orcid":null},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Kidane M Tekle","raw_affiliation_strings":["Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. kidane.tekle@cbu.uib.no","Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. kidane.tekle@cbu.uib.no","institution_ids":[]},{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090274388","display_name":"Nathalie Reuter","orcid":"https://orcid.org/0000-0002-3649-7675"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Nathalie Reuter","raw_affiliation_strings":["Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. Nathalie.Reuter@mbi.uib.no","Department of Molecular Biology, University of Bergen, Bergen, Norway. Nathalie.Reuter@mbi.uib.no","Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway. Nathalie.Reuter@mbi.uib.no","institution_ids":[]},{"raw_affiliation_string":"Department of Molecular Biology, University of Bergen, Bergen, Norway. Nathalie.Reuter@mbi.uib.no","institution_ids":[]},{"raw_affiliation_string":"Computational Biology Unit, Department of Informatics, University of Bergen, Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5064384115"],"corresponding_institution_ids":["https://openalex.org/I4432739"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.4188,"has_fulltext":true,"cited_by_count":117,"citation_normalized_percentile":{"value":0.89482097,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"15","issue":"1","first_page":"427","last_page":"427"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9151999950408936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9151999950408936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.06729999929666519,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10798","display_name":"Crystallography and molecular interactions","score":0.0024999999441206455,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6928074359893799},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6687771677970886},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.587110161781311},{"id":"https://openalex.org/keywords/soap","display_name":"SOAP","score":0.48270726203918457},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.452111154794693},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4512934386730194},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.449917733669281},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.43613535165786743},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4277821183204651},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.4270070195198059},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.4156906008720398},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.342977374792099},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.25333496928215027},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2020660638809204},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1623634397983551},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.154159277677536},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15331816673278809},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14568641781806946}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6928074359893799},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6687771677970886},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.587110161781311},{"id":"https://openalex.org/C17881449","wikidata":"https://www.wikidata.org/wiki/Q189620","display_name":"SOAP","level":2,"score":0.48270726203918457},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.452111154794693},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4512934386730194},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.449917733669281},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.43613535165786743},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4277821183204651},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.4270070195198059},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.4156906008720398},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.342977374792099},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.25333496928215027},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2020660638809204},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1623634397983551},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.154159277677536},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15331816673278809},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14568641781806946},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000263","descriptor_name":"Adenylate Kinase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000263","descriptor_name":"Adenylate Kinase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000263","descriptor_name":"Adenylate Kinase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000263","descriptor_name":"Adenylate Kinase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-014-0427-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0427-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0427-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25547242","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25547242","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:bora.uib.no:1956/13058","is_oa":true,"landing_page_url":"https://hdl.handle.net/1956/13058","pdf_url":null,"source":{"id":"https://openalex.org/S4306400085","display_name":"Bergen Open Research Archive (BORA) (University of Bergen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4432739","host_organization_name":"University of Bergen","host_organization_lineage":["https://openalex.org/I4432739"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:europepmc.org:3304149","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4339738","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-014-0427-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0427-6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0427-6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320323898","display_name":"Bergens Forskningsstiftelse","ror":"https://ror.org/04efaep75"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2172241314.pdf","grobid_xml":"https://content.openalex.org/works/W2172241314.grobid-xml"},"referenced_works_count":83,"referenced_works":["https://openalex.org/W4596269","https://openalex.org/W1504837664","https://openalex.org/W1525979193","https://openalex.org/W1568082615","https://openalex.org/W1937747860","https://openalex.org/W1965885513","https://openalex.org/W1968407616","https://openalex.org/W1977630495","https://openalex.org/W1978349370","https://openalex.org/W1979937246","https://openalex.org/W1982474274","https://openalex.org/W1996765646","https://openalex.org/W1998132407","https://openalex.org/W2002001977","https://openalex.org/W2002838513","https://openalex.org/W2004067483","https://openalex.org/W2005148384","https://openalex.org/W2009191897","https://openalex.org/W2010222695","https://openalex.org/W2010956452","https://openalex.org/W2011109781","https://openalex.org/W2013994292","https://openalex.org/W2014425795","https://openalex.org/W2018748094","https://openalex.org/W2025021746","https://openalex.org/W2028968631","https://openalex.org/W2031901496","https://openalex.org/W2032702737","https://openalex.org/W2047346757","https://openalex.org/W2047682506","https://openalex.org/W2048822589","https://openalex.org/W2048910851","https://openalex.org/W2051893115","https://openalex.org/W2052612332","https://openalex.org/W2052900845","https://openalex.org/W2053893146","https://openalex.org/W2056825675","https://openalex.org/W2058101188","https://openalex.org/W2065960789","https://openalex.org/W2066904693","https://openalex.org/W2066926304","https://openalex.org/W2067763399","https://openalex.org/W2071656198","https://openalex.org/W2072667360","https://openalex.org/W2078646305","https://openalex.org/W2080428635","https://openalex.org/W2080655845","https://openalex.org/W2082620440","https://openalex.org/W2085277871","https://openalex.org/W2095265465","https://openalex.org/W2095509648","https://openalex.org/W2095964215","https://openalex.org/W2096602558","https://openalex.org/W2098480672","https://openalex.org/W2098968010","https://openalex.org/W2099984659","https://openalex.org/W2102211745","https://openalex.org/W2102648626","https://openalex.org/W2106393249","https://openalex.org/W2107268733","https://openalex.org/W2107707499","https://openalex.org/W2111628752","https://openalex.org/W2112234958","https://openalex.org/W2112315506","https://openalex.org/W2113971181","https://openalex.org/W2118180037","https://openalex.org/W2127362915","https://openalex.org/W2131377322","https://openalex.org/W2132589721","https://openalex.org/W2138008040","https://openalex.org/W2141519313","https://openalex.org/W2149744037","https://openalex.org/W2149830121","https://openalex.org/W2154564388","https://openalex.org/W2155137057","https://openalex.org/W2158528359","https://openalex.org/W2160451368","https://openalex.org/W2166091400","https://openalex.org/W2169773700","https://openalex.org/W2170634643","https://openalex.org/W2331756548","https://openalex.org/W3100807572","https://openalex.org/W3106205370"],"related_works":["https://openalex.org/W4234113285","https://openalex.org/W2388714034","https://openalex.org/W2363105274","https://openalex.org/W2371844088","https://openalex.org/W2376941595","https://openalex.org/W2145118195","https://openalex.org/W2107326055","https://openalex.org/W3118344282","https://openalex.org/W2117699649","https://openalex.org/W2146674646"],"abstract_inverted_index":{"BACKGROUND:":[0],"Normal":[1],"mode":[2,251],"analysis":[3,193],"(NMA)":[4],"using":[5,142,197],"elastic":[6],"network":[7],"models":[8],"is":[9,207,216,224,281],"a":[10,70,80,211,240,269],"reliable":[11],"and":[12,20,41,87,105,151,191,247,263,277],"cost-effective":[13],"computational":[14],"method":[15],"to":[16,205],"characterise":[17],"protein":[18,36,39,74,178,185,236,258,261],"flexibility":[19,259,280],"by":[21,34,48,120],"extension,":[22],"their":[23],"dynamics.":[24],"Further":[25],"insight":[26],"into":[27],"the":[28,84,88,93,110,121,132,139,145,152,192,198,255,274,279,284],"dynamics-function":[29],"relationship":[30],"can":[31,45,78,113,267],"be":[32,46,114],"gained":[33],"comparing":[35,49],"motions":[37],"between":[38],"homologs":[40],"functional":[42],"classifications.":[43],"This":[44,180],"achieved":[47],"normal":[50],"modes":[51],"obtained":[52],"from":[53],"sets":[54],"of":[55,69,72,109,131,134,176,184,188,194,257,272],"evolutionary":[56],"related":[57],"proteins.":[58],"RESULTS:":[59],"We":[60],"have":[61],"developed":[62],"an":[63,225],"automated":[64],"tool":[65,227],"for":[66,165,174,231,250],"comparative":[67,232],"NMA":[68,175,233],"set":[71,141],"pre-aligned":[73],"structures.":[75,179,237,286],"The":[76,99,125,155],"user":[77,123],"submit":[79],"sequence":[81],"alignment":[82],"in":[83,92,138],"FASTA":[85],"format":[86],"corresponding":[89],"coordinate":[90],"files":[91],"Protein":[94],"Data":[95],"Bank":[96],"(PDB)":[97],"format.":[98],"computed":[100],"normalised":[101],"squared":[102],"atomic":[103,106],"fluctuations":[104],"deformation":[107],"energies":[108],"submitted":[111,140],"structures":[112,275],"easily":[115],"compared":[116],"on":[117,161,234],"graphs":[118],"provided":[119],"web":[122,126,163,213,242],"interface.":[124],"server":[127,164],"provides":[128,170],"pairwise":[129],"comparison":[130],"dynamics":[133],"all":[135],"proteins":[136],"included":[137],"two":[143],"measures:":[144],"Root":[146],"Mean":[147],"Squared":[148],"Inner":[149],"Product":[150],"Bhattacharyya":[153],"Coefficient.":[154],"Comparative":[156],"Analysis":[157],"has":[158],"been":[159],"implemented":[160],"our":[162],"NMA,":[166],"WEBnm@,":[167],"which":[168],"also":[169],"recently":[171],"upgraded":[172],"functionality":[173],"single":[177],"includes":[181],"new":[182],"visualisations":[183],"motion,":[186],"visualisation":[187],"inter-residue":[189],"correlations":[190],"conformational":[195],"change":[196],"overlap":[199],"analysis.":[200],"In":[201],"addition,":[202],"programmatic":[203],"access":[204],"WEBnm@":[206,222,253],"now":[208],"available":[209,217],"through":[210],"SOAP-based":[212],"service.":[214],"Webnm@":[215],"at":[218],"http://apps.cbu.uib.no/webnma":[219],".":[220],"CONCLUSION:":[221],"v2.0":[223],"online":[226],"offering":[228],"unique":[229],"capability":[230],"multiple":[235],"Along":[238],"with":[239],"convenient":[241],"interface,":[243],"powerful":[244],"computing":[245],"resources,":[246],"several":[248],"methods":[249],"analyses,":[252],"facilitates":[254],"assessment":[256],"within":[260],"families":[262],"superfamilies.":[264],"These":[265],"analyses":[266],"give":[268],"good":[270],"view":[271],"how":[273,278],"move":[276],"conserved":[282],"over":[283],"different":[285]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":24},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":3}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
