{"id":"https://openalex.org/W2158897405","doi":"https://doi.org/10.1186/s12859-014-0405-z","title":"Methodology for the inference of gene function from phenotype data","display_name":"Methodology for the inference of gene function from phenotype data","publication_year":2014,"publication_date":"2014-12-01","ids":{"openalex":"https://openalex.org/W2158897405","doi":"https://doi.org/10.1186/s12859-014-0405-z","mag":"2158897405","pmid":"https://pubmed.ncbi.nlm.nih.gov/25495798"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-014-0405-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0405-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0405-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0405-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089477045","display_name":"Joao A Ascensao","orcid":"https://orcid.org/0000-0003-1369-6847"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]},{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joao A Ascensao","raw_affiliation_strings":["Rice University, 6100 Main Street, Houston, TX, USA. Joao.Ascensao@rice.edu","The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA. Joao.Ascensao@rice.edu","Rice University, Houston, USA","The Jackson Laboratory, Bar Harbor, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rice University, 6100 Main Street, Houston, TX, USA. Joao.Ascensao@rice.edu","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA. Joao.Ascensao@rice.edu","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"Rice University, Houston, USA","institution_ids":["https://openalex.org/I74775410"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051955100","display_name":"M. Eileen Dolan","orcid":"https://orcid.org/0000-0001-7732-3295"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mary E Dolan","raw_affiliation_strings":["The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA. Mary.Dolan@jax.org","The Jackson Laboratory, Bar Harbor, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA. Mary.Dolan@jax.org","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029292423","display_name":"David P. Hill","orcid":"https://orcid.org/0000-0001-7476-6306"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David P Hill","raw_affiliation_strings":["The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA. David.Hill@jax.org","The Jackson Laboratory, Bar Harbor, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA. David.Hill@jax.org","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016349593","display_name":"Judith A. Blake","orcid":"https://orcid.org/0000-0001-8522-334X"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Judith A Blake","raw_affiliation_strings":["The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA. Judith.Blake@jax.org","The Jackson Laboratory, Bar Harbor, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, 600 Main Street, Bar Harbor, ME, USA. Judith.Blake@jax.org","institution_ids":["https://openalex.org/I4210115256"]},{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, USA","institution_ids":["https://openalex.org/I4210115256"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5051955100"],"corresponding_institution_ids":["https://openalex.org/I4210115256"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.13,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.52230477,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"15","issue":"1","first_page":"405","last_page":"405"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8402000069618225,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8402000069618225,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.14839999377727509,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.0026000000070780516,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6811375617980957},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6704243421554565},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.603466808795929},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5518813133239746},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.47882798314094543},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4728529751300812},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.4505154490470886},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4441677927970886},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.4164811968803406},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4010578989982605},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3774089217185974},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35389187932014465},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3017294406890869},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2141590416431427},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20188871026039124}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6811375617980957},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6704243421554565},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.603466808795929},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5518813133239746},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.47882798314094543},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4728529751300812},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.4505154490470886},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4441677927970886},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.4164811968803406},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4010578989982605},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3774089217185974},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35389187932014465},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3017294406890869},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2141590416431427},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20188871026039124},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-014-0405-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0405-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0405-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25495798","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25495798","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3282262","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4302099","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:mouseion.jax.org:stfb2014-1210","is_oa":true,"landing_page_url":"http://www.biomedcentral.com/1471-2105/15/405","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2014","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1186/s12859-014-0405-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0405-z","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0405-z","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2820513190","display_name":null,"funder_award_id":"U41 HG002273","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4678927171","display_name":null,"funder_award_id":"R25 HG007053","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G5070196563","display_name":null,"funder_award_id":"HG-002273","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G5170952278","display_name":null,"funder_award_id":"P41 HG002273","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6340323725","display_name":null,"funder_award_id":"R01 HG002273","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G7137669181","display_name":null,"funder_award_id":"HG-007053","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158897405.pdf","grobid_xml":"https://content.openalex.org/works/W2158897405.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1525432201","https://openalex.org/W1566952502","https://openalex.org/W1825748050","https://openalex.org/W1894243385","https://openalex.org/W1969271108","https://openalex.org/W1975138006","https://openalex.org/W1997237308","https://openalex.org/W2006719549","https://openalex.org/W2026149676","https://openalex.org/W2032584931","https://openalex.org/W2051315170","https://openalex.org/W2077154296","https://openalex.org/W2083551778","https://openalex.org/W2103017472","https://openalex.org/W2110078328","https://openalex.org/W2110114082","https://openalex.org/W2111903862","https://openalex.org/W2135837034","https://openalex.org/W2137079713","https://openalex.org/W2138203479","https://openalex.org/W2144563318","https://openalex.org/W2151574237","https://openalex.org/W2155142785","https://openalex.org/W2159917467","https://openalex.org/W2166451712","https://openalex.org/W2167182421","https://openalex.org/W2169896388","https://openalex.org/W2495004097","https://openalex.org/W3199143553"],"related_works":["https://openalex.org/W2107952955","https://openalex.org/W2163095708","https://openalex.org/W2265558044","https://openalex.org/W1999493785","https://openalex.org/W2792440843","https://openalex.org/W2042301222","https://openalex.org/W2565684071","https://openalex.org/W75900285","https://openalex.org/W2231731582","https://openalex.org/W2060948468"],"abstract_inverted_index":{"BACKGROUND:":[0],"Biomedical":[1],"ontologies":[2],"are":[3,193,217],"increasingly":[4],"instrumental":[5],"in":[6,71,119,212,220,240],"the":[7,36,51,84,94,164,170,178,213,221,228,275,280,304,307,322],"advancement":[8],"of":[9,21,38,50,148,257,282,306,313,321,324],"biological":[10],"research":[11],"primarily":[12,133],"through":[13,134],"their":[14],"use":[15,49],"to":[16,45,55,62,106,121,155,189,208,277],"efficiently":[17],"consolidate":[18],"large":[19],"amounts":[20],"data":[22,57,63,209],"into":[23],"structured,":[24],"accessible":[25],"sets.":[26],"However,":[27],"ontology":[28,61,67],"development":[29,47],"and":[30,48,75,93,144,167,173,290],"usage":[31],"can":[32],"be":[33,294],"hampered":[34],"by":[35,40,162,296],"segregation":[37],"knowledge":[39],"domain":[41],"that":[42,124,150,216,252,292],"occurs":[43],"due":[44],"independent":[46],"ontologies.":[52],"The":[53,181],"ability":[54],"infer":[56],"associated":[58,64],"with":[59,65],"one":[60],"another":[66],"would":[68,293],"prove":[69],"useful":[70],"expanding":[72],"information":[73],"content":[74],"scope.":[76],"We":[77,141,204,250],"here":[78],"focus":[79],"on":[80,127],"relating":[81],"two":[82],"ontologies:":[83],"Gene":[85],"Ontology":[86,97],"(GO),":[87],"which":[88,99],"encodes":[89],"canonical":[90],"gene":[91,129,160,171,202,288],"function,":[92],"Mammalian":[95],"Phenotype":[96],"(MP),":[98],"describes":[100],"non-canonical":[101],"phenotypes,":[102],"using":[103],"statistical":[104],"methods":[105],"suggest":[107],"GO":[108,243],"functional":[109,244,260],"annotations":[110,261],"from":[111,131,199,235,262],"existing":[112],"MP":[113],"phenotype":[114,132,187,264],"annotations.":[115],"This":[116],"work":[117,301],"is":[118,255],"contrast":[120],"previous":[122],"studies":[123],"have":[125,142],"focused":[126],"inferring":[128,258],"function":[130,161,289],"lexical":[135],"or":[136],"semantic":[137],"similarity":[138],"measures.":[139],"RESULTS:":[140],"designed":[143],"tested":[145],"a":[146,152,200,297,311],"set":[147],"algorithms":[149,182,309],"represents":[151],"novel":[153],"methodology":[154,207],"define":[156],"rules":[157],"for":[158,246,279,310],"predicting":[159],"examining":[163],"emergent":[165],"structure":[166],"relationships":[168,184],"between":[169,287],"functions":[172],"phenotypes":[174,291],"rather":[175],"than":[176],"inspecting":[177],"terms":[179,188],"semantically.":[180],"inspect":[183],"among":[185],"multiple":[186],"deduce":[190],"if":[191],"there":[192],"cases":[194],"where":[195],"they":[196],"all":[197],"arise":[198],"single":[201],"function.":[203],"apply":[205],"this":[206],"about":[210],"genes":[211],"laboratory":[214],"mouse":[215],"formally":[218],"represented":[219],"Mouse":[222],"Genome":[223],"Informatics":[224],"(MGI)":[225],"resource.":[226],"From":[227],"data,":[229],"7444":[230],"rule":[231],"instances":[232],"were":[233],"generated":[234],"five":[236],"generalized":[237],"rules,":[238],"resulting":[239],"4818":[241],"unique":[242],"predictions":[245],"1796":[247],"genes.":[248],"CONCLUSIONS:":[249],"show":[251],"our":[253,272],"method":[254,273],"capable":[256],"high-quality":[259],"curated":[263,328],"data.":[265,329],"As":[266],"well":[267],"as":[268],"creating":[269],"inferred":[270],"annotations,":[271],"has":[274],"potential":[276],"allow":[278],"elucidation":[281],"unforeseen,":[283],"biologically":[284],"significant":[285],"associations":[286],"overlooked":[295],"semantics-based":[298],"approach.":[299],"Future":[300],"will":[302],"include":[303],"implementation":[305],"described":[308],"variety":[312],"other":[314],"model":[315],"organism":[316],"databases,":[317],"taking":[318],"full":[319],"advantage":[320],"abundance":[323],"available":[325],"high":[326],"quality":[327]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-25T15:57:00.446498","created_date":"2025-10-10T00:00:00"}
