{"id":"https://openalex.org/W2114504162","doi":"https://doi.org/10.1186/s12859-014-0388-9","title":"Linear-time computation of minimal absent words using suffix array","display_name":"Linear-time computation of minimal absent words using suffix array","publication_year":2014,"publication_date":"2014-12-01","ids":{"openalex":"https://openalex.org/W2114504162","doi":"https://doi.org/10.1186/s12859-014-0388-9","mag":"2114504162","pmid":"https://pubmed.ncbi.nlm.nih.gov/25526884"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-014-0388-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0388-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0388-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0388-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102952570","display_name":"Carl Barton","orcid":"https://orcid.org/0000-0003-1589-0432"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Carl Barton","raw_affiliation_strings":["Department of Informatics, King's College London, The Strand, WC2R 2LS, London, UK. carl.barton@kcl.ac.uk","Department of Informatics, King\u2019s College London, The Strand, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, King's College London, The Strand, WC2R 2LS, London, UK. carl.barton@kcl.ac.uk","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Department of Informatics, King\u2019s College London, The Strand, UK","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043291823","display_name":"Alice H\u00e9liou","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210126360","display_name":"Centre Inria de Saclay","ror":"https://ror.org/0315e5x55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210126360"]},{"id":"https://openalex.org/I4210139461","display_name":"Laboratoire d'Informatique de l'\u00c9cole Polytechnique","ror":"https://ror.org/04afed728","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I142476485","https://openalex.org/I4210139461","https://openalex.org/I4210145102","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alice Heliou","raw_affiliation_strings":["Inria Saclay-\u00cele de France, AMIB, B\u00e2timent Alan Turing, Palaiseau, France. alice.heliou@lix.polytechnique.fr","Laboratoire d'Informatique de l'\u00c9cole Polytechnique (LIX), CNRS UMR 7161, Palaiseau, France. alice.heliou@lix.polytechnique.fr","Inria Saclay-\u00cele de France, AMIB, B\u00e2timent Alan Turing, Palaiseau, France","Laboratoire d\u2019Informatique de l\u2019\u00c9cole Polytechnique (LIX), CNRS, Palaiseau, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inria Saclay-\u00cele de France, AMIB, B\u00e2timent Alan Turing, Palaiseau, France. alice.heliou@lix.polytechnique.fr","institution_ids":["https://openalex.org/I4210126360","https://openalex.org/I4210139461"]},{"raw_affiliation_string":"Laboratoire d'Informatique de l'\u00c9cole Polytechnique (LIX), CNRS UMR 7161, Palaiseau, France. alice.heliou@lix.polytechnique.fr","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210139461"]},{"raw_affiliation_string":"Inria Saclay-\u00cele de France, AMIB, B\u00e2timent Alan Turing, Palaiseau, France","institution_ids":["https://openalex.org/I4210126360"]},{"raw_affiliation_string":"Laboratoire d\u2019Informatique de l\u2019\u00c9cole Polytechnique (LIX), CNRS, Palaiseau, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210139461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061052367","display_name":"Laurent Mouchard","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108118","display_name":"Laboratoire d'Informatique, du Traitement de l'Information et des Syst\u00e8mes","ror":"https://ror.org/01f1vfy95","country_code":"FR","type":"facility","lineage":["https://openalex.org/I141576021","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210108118","https://openalex.org/I62396329","https://openalex.org/I88814501"]},{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent Mouchard","raw_affiliation_strings":["University of Rouen, LITIS EA 4108, TIBS, Rouen, France. laurent.mouchard@univ-rouen.fr","University of Rouen, LITIS EA 4108, TIBS, Rouen, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Rouen, LITIS EA 4108, TIBS, Rouen, France. laurent.mouchard@univ-rouen.fr","institution_ids":["https://openalex.org/I62396329"]},{"raw_affiliation_string":"University of Rouen, LITIS EA 4108, TIBS, Rouen, France","institution_ids":["https://openalex.org/I4210108118","https://openalex.org/I62396329"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051275317","display_name":"Solon P. Pissis","orcid":"https://orcid.org/0000-0002-1445-1932"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Solon P Pissis","raw_affiliation_strings":["Department of Informatics, King's College London, The Strand, WC2R 2LS, London, UK. solon.pissis@kcl.ac.uk","Department of Informatics, King\u2019s College London, The Strand, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, King's College London, The Strand, WC2R 2LS, London, UK. solon.pissis@kcl.ac.uk","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Department of Informatics, King\u2019s College London, The Strand, UK","institution_ids":["https://openalex.org/I183935753"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5051275317"],"corresponding_institution_ids":["https://openalex.org/I183935753"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":5.3336,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.95509745,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"388","last_page":"388"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9438999891281128,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9438999891281128,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11567","display_name":"semigroups and automata theory","score":0.01730000041425228,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.00559999980032444,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.8585395216941833},{"id":"https://openalex.org/keywords/suffix-array","display_name":"Suffix array","score":0.7828290462493896},{"id":"https://openalex.org/keywords/generalized-suffix-tree","display_name":"Generalized suffix tree","score":0.737345278263092},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.725153923034668},{"id":"https://openalex.org/keywords/compressed-suffix-array","display_name":"Compressed suffix array","score":0.7242680788040161},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.666621208190918},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.5931863784790039},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5779990553855896},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5746929049491882},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5517293810844421},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.5214656591415405},{"id":"https://openalex.org/keywords/linear-space","display_name":"Linear space","score":0.4134480357170105},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.39968785643577576},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.3381592929363251},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.27030396461486816},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.2529893219470978},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09468656778335571}],"concepts":[{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.8585395216941833},{"id":"https://openalex.org/C2779259728","wikidata":"https://www.wikidata.org/wiki/Q281472","display_name":"Suffix array","level":3,"score":0.7828290462493896},{"id":"https://openalex.org/C118146561","wikidata":"https://www.wikidata.org/wiki/Q5532514","display_name":"Generalized suffix tree","level":4,"score":0.737345278263092},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.725153923034668},{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.7242680788040161},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.666621208190918},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.5931863784790039},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5779990553855896},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5746929049491882},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5517293810844421},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.5214656591415405},{"id":"https://openalex.org/C176370821","wikidata":"https://www.wikidata.org/wiki/Q1826459","display_name":"Linear space","level":2,"score":0.4134480357170105},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.39968785643577576},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.3381592929363251},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.27030396461486816},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.2529893219470978},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09468656778335571},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056890","descriptor_name":"Eukaryota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-014-0388-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0388-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0388-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25526884","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25526884","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.750.74","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.750.74","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arxiv.org/pdf/1406.6341.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-01110274v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-01110274","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2014, 15, pp.11. &#x27E8;10.1186/s12859-014-0388-9&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3282234","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4297395","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-014-0388-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0388-9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0388-9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5799999833106995}],"awards":[{"id":"https://openalex.org/G4515810461","display_name":"DTA - King's College London","funder_award_id":"EP/J500252/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G720256107","display_name":null,"funder_award_id":"RG130720","funder_id":"https://openalex.org/F4320320006","funder_display_name":"Royal Society"}],"funders":[{"id":"https://openalex.org/F4320320006","display_name":"Royal Society","ror":"https://ror.org/03wnrjx87"},{"id":"https://openalex.org/F4320320285","display_name":"King's College London","ror":"https://ror.org/0220mzb33"},{"id":"https://openalex.org/F4320329938","display_name":"R\u00e9gion Normandie","ror":null},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2114504162.pdf","grobid_xml":"https://content.openalex.org/works/W2114504162.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W128094816","https://openalex.org/W1583827615","https://openalex.org/W1614203862","https://openalex.org/W1971248947","https://openalex.org/W2000264668","https://openalex.org/W2006514054","https://openalex.org/W2018650627","https://openalex.org/W2023034125","https://openalex.org/W2049919946","https://openalex.org/W2052987310","https://openalex.org/W2065007831","https://openalex.org/W2075847813","https://openalex.org/W2114820744","https://openalex.org/W2138565200","https://openalex.org/W2139749722","https://openalex.org/W2158874082","https://openalex.org/W2161938817","https://openalex.org/W2183776810","https://openalex.org/W3154566661"],"related_works":["https://openalex.org/W2063841356","https://openalex.org/W2405149725","https://openalex.org/W2003608043","https://openalex.org/W2118703123","https://openalex.org/W1527782099","https://openalex.org/W2067974452","https://openalex.org/W2950054934","https://openalex.org/W4292461527","https://openalex.org/W2583658747","https://openalex.org/W1486336060"],"abstract_inverted_index":{"BACKGROUND:":[0],"An":[1,129],"absent":[2,24,35,77,175,257,275],"word":[3,6,13,25],"of":[4,8,42,47,87,96,122,131,181,191,215,243,247,273],"a":[5,12,22,53,80,264],"y":[7],"length":[9],"n":[10],"is":[11,21,99,141,152,218,254],"that":[14,202,238],"does":[15],"not":[16],"occur":[17,31],"in":[18,32,40,59,149,245],"y.":[19,33],"It":[20],"minimal":[23,76,174,256,274],"if":[26],"all":[27,45,75,173],"its":[28],"proper":[29],"factors":[30],"Minimal":[34],"words":[36,78,176,276],"have":[37],"been":[38],"computed":[39],"genomes":[41],"organisms":[43],"from":[44],"domains":[46],"life;":[48],"their":[49,248],"computation":[50,272],"also":[51,103,135],"provides":[52],"fast":[54],"alternative":[55],"for":[56,73,114,171,227,270],"measuring":[57],"approximation":[58],"sequence":[60,228],"comparison.":[61],"There":[62,102],"exists":[63,104],"an":[64,105,162],"[Formula:":[65,69,106,110,163,167],"see":[66,70,107,111,164,168],"text]-time":[67,108,165],"and":[68,109,140,166,184,198,267],"text]-space":[71,112,169],"algorithm":[72,98,113,133,170,269],"computing":[74,172],"on":[79,84,119,178,278],"fixed-sized":[81],"alphabet":[82],"based":[83,118,177,277],"the":[85,115,120,138,143,179,188,206,241,255,271,279],"construction":[86,121,180],"suffix":[88,123,182,280],"automata":[89],"(Crochemore":[90],"et":[91,126,210],"al.,":[92,127],"1998).":[93],"No":[94],"implementation":[95,130,190,204,217],"this":[97,132,150,157,192,203,260],"publicly":[100],"available.":[101,145],"same":[116],"problem":[117],"arrays":[124],"(Pinho":[125],"2009).":[128],"was":[134],"provided":[136],"by":[137,160,208,234],"authors":[139],"currently":[142],"fastest":[144],"RESULTS:":[146],"Our":[147],"contribution":[148],"article":[151],"twofold:":[153],"first,":[154],"we":[155,186,262],"bridge":[156],"unpleasant":[158],"gap":[159],"presenting":[161],"arrays;":[183],"second,":[185],"provide":[187],"respective":[189],"algorithm.":[193],"Experimental":[194],"results,":[195],"using":[196],"real":[197],"synthetic":[199],"data,":[200],"show":[201],"outperforms":[205],"one":[207],"Pinho":[209],"al.":[211],"The":[212],"open-source":[213],"code":[214],"our":[216],"freely":[219],"available":[220],"at":[221],"http://github.com/solonas13/maw":[222],".":[223],"CONCLUSIONS:":[224],"Classical":[225],"notions":[226],"comparison":[229],"are":[230],"increasingly":[231],"being":[232],"replaced":[233],"other":[235],"similarity":[236],"measures":[237],"refer":[239],"to":[240],"composition":[242],"sequences":[244],"terms":[246],"constituent":[249],"patterns.":[250],"One":[251],"such":[252],"measure":[253],"words.":[258],"In":[259],"article,":[261],"present":[263],"new":[265],"linear-time":[266],"linear-space":[268],"array.":[281]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":5}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
