{"id":"https://openalex.org/W2016266742","doi":"https://doi.org/10.1186/s12859-014-0373-3","title":"ContextD: an algorithm to identify contextual properties of medical terms in a Dutch clinical corpus","display_name":"ContextD: an algorithm to identify contextual properties of medical terms in a Dutch clinical corpus","publication_year":2014,"publication_date":"2014-11-28","ids":{"openalex":"https://openalex.org/W2016266742","doi":"https://doi.org/10.1186/s12859-014-0373-3","mag":"2016266742","pmid":"https://pubmed.ncbi.nlm.nih.gov/25432799"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-014-0373-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0373-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0373-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0373-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048053757","display_name":"Zubair Afzal","orcid":"https://orcid.org/0000-0001-7812-2399"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Zubair Afzal","raw_affiliation_strings":["Department of Medical Informatics, Erasmus Medical Center, P.O. Box 2040, Rotterdam, CA, 3000, Netherlands. m.afzal@erasmusmc.nl","Dept of Medical Informatics, Erasmus Medical Center, Rotterdam, Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Erasmus Medical Center, P.O. Box 2040, Rotterdam, CA, 3000, Netherlands. m.afzal@erasmusmc.nl","institution_ids":["https://openalex.org/I2801952686","https://openalex.org/I913958620"]},{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus Medical Center, Rotterdam, Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037339423","display_name":"Ewoud Pons","orcid":"https://orcid.org/0000-0002-5219-9790"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ewoud Pons","raw_affiliation_strings":["Department of Medical Informatics, Erasmus Medical Center, P.O. Box 2040, Rotterdam, CA, 3000, Netherlands. e.pons@erasmusmc.nl","Dept of Medical Informatics, Erasmus Medical Center, Rotterdam, Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Erasmus Medical Center, P.O. Box 2040, Rotterdam, CA, 3000, Netherlands. e.pons@erasmusmc.nl","institution_ids":["https://openalex.org/I2801952686"]},{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus Medical Center, Rotterdam, Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076346443","display_name":"Kang Ning","orcid":"https://orcid.org/0000-0003-3325-5387"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ning Kang","raw_affiliation_strings":["Department of Medical Informatics, Erasmus Medical Center, P.O. Box 2040, Rotterdam, CA, 3000, Netherlands. n.kang@erasmusmc.nl","Dept of Medical Informatics, Erasmus Medical Center, Rotterdam, Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Erasmus Medical Center, P.O. Box 2040, Rotterdam, CA, 3000, Netherlands. n.kang@erasmusmc.nl","institution_ids":["https://openalex.org/I2801952686","https://openalex.org/I913958620"]},{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus Medical Center, Rotterdam, Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011711127","display_name":"Miriam Sturkenboom","orcid":"https://orcid.org/0000-0003-1360-2388"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Miriam CJM Sturkenboom","raw_affiliation_strings":["Department of Medical Informatics, Erasmus Medical Center, P.O. Box 2040, Rotterdam, CA, 3000, Netherlands. m.sturkenboom@erasmusmc.nl","Dept of Medical Informatics, Erasmus Medical Center, Rotterdam, Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Erasmus Medical Center, P.O. Box 2040, Rotterdam, CA, 3000, Netherlands. m.sturkenboom@erasmusmc.nl","institution_ids":["https://openalex.org/I2801952686","https://openalex.org/I913958620"]},{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus Medical Center, Rotterdam, Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077586396","display_name":"Martijn J. Schuemie","orcid":"https://orcid.org/0000-0002-0817-5361"},"institutions":[{"id":"https://openalex.org/I4210151386","display_name":"Janssen (United States)","ror":"https://ror.org/05af73403","country_code":"US","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I4210151386"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martijn J Schuemie","raw_affiliation_strings":["Janssen Research and Development LLC, Titusville, NJ, USA. mschuemi@its.jnj.com","Janssen Research & Development LLC, Titusville, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Janssen Research and Development LLC, Titusville, NJ, USA. mschuemi@its.jnj.com","institution_ids":["https://openalex.org/I4210151386"]},{"raw_affiliation_string":"Janssen Research & Development LLC, Titusville, NJ, USA","institution_ids":["https://openalex.org/I4210151386"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005077862","display_name":"Jan A. Kors","orcid":"https://orcid.org/0000-0002-4929-026X"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jan A Kors","raw_affiliation_strings":["Department of Medical Informatics, Erasmus Medical Center, P.O. Box 2040, Rotterdam, CA, 3000, Netherlands. j.kors@erasmusmc.nl","Dept of Medical Informatics, Erasmus Medical Center, Rotterdam, Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Erasmus Medical Center, P.O. Box 2040, Rotterdam, CA, 3000, Netherlands. j.kors@erasmusmc.nl","institution_ids":["https://openalex.org/I2801952686","https://openalex.org/I913958620"]},{"raw_affiliation_string":"Dept of Medical Informatics, Erasmus Medical Center, Rotterdam, Netherlands","institution_ids":["https://openalex.org/I2801952686"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5048053757"],"corresponding_institution_ids":["https://openalex.org/I2801952686","https://openalex.org/I913958620"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.9921,"has_fulltext":true,"cited_by_count":61,"citation_normalized_percentile":{"value":0.86074914,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"15","issue":"1","first_page":"373","last_page":"373"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8233000040054321,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8233000040054321,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.07810000330209732,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.021299999207258224,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/negation","display_name":"Negation","score":0.9174888134002686},{"id":"https://openalex.org/keywords/temporality","display_name":"Temporality","score":0.8529927730560303},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6971276998519897},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6963052749633789},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5837308764457703},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.5514984726905823},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5511642098426819},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5229414701461792},{"id":"https://openalex.org/keywords/medical-diagnosis","display_name":"Medical diagnosis","score":0.5048304200172424},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.47799673676490784},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4643571376800537},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.40246322751045227},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.24142947793006897},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.16709119081497192},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.09604161977767944},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09539905190467834},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09317901730537415}],"concepts":[{"id":"https://openalex.org/C2185349","wikidata":"https://www.wikidata.org/wiki/Q190558","display_name":"Negation","level":2,"score":0.9174888134002686},{"id":"https://openalex.org/C141679102","wikidata":"https://www.wikidata.org/wiki/Q3517747","display_name":"Temporality","level":2,"score":0.8529927730560303},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6971276998519897},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6963052749633789},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5837308764457703},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.5514984726905823},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5511642098426819},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5229414701461792},{"id":"https://openalex.org/C534262118","wikidata":"https://www.wikidata.org/wiki/Q177719","display_name":"Medical diagnosis","level":2,"score":0.5048304200172424},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.47799673676490784},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4643571376800537},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.40246322751045227},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.24142947793006897},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.16709119081497192},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.09604161977767944},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09539905190467834},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09317901730537415},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009426","descriptor_name":"Netherlands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009426","descriptor_name":"Netherlands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009426","descriptor_name":"Netherlands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016347","descriptor_name":"Medical Records Systems, Computerized","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016347","descriptor_name":"Medical Records Systems, Computerized","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016347","descriptor_name":"Medical Records Systems, Computerized","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-014-0373-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0373-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0373-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25432799","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25432799","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:eur:oai:repub.eur.nl:83125","is_oa":true,"landing_page_url":"http://hdl.handle.net/1765/83125","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"B M C Bioinformatics, 15(1)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3232931","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4264258","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:repub.eur.nl:83125","is_oa":false,"landing_page_url":"https://repub.eur.nl/pub/83125","pdf_url":null,"source":{"id":"https://openalex.org/S4306400997","display_name":"RePub (Erasmus University, Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"B M C Bioinformatics vol. 15 no. 1","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-014-0373-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0373-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0373-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.6100000143051147,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321007","display_name":"ZonMw","ror":"https://ror.org/01yaj9a77"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2016266742.pdf","grobid_xml":"https://content.openalex.org/works/W2016266742.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W28670821","https://openalex.org/W180510140","https://openalex.org/W273036708","https://openalex.org/W1504212872","https://openalex.org/W1602694398","https://openalex.org/W1759313566","https://openalex.org/W1964625659","https://openalex.org/W1978928459","https://openalex.org/W1982464493","https://openalex.org/W1995151442","https://openalex.org/W2004910511","https://openalex.org/W2031051730","https://openalex.org/W2038889169","https://openalex.org/W2053154970","https://openalex.org/W2062458775","https://openalex.org/W2095870333","https://openalex.org/W2101891738","https://openalex.org/W2105827650","https://openalex.org/W2111698097","https://openalex.org/W2115915625","https://openalex.org/W2123564229","https://openalex.org/W2137407193","https://openalex.org/W2139865360","https://openalex.org/W2142786899","https://openalex.org/W2146089916","https://openalex.org/W2159230276","https://openalex.org/W2159583324","https://openalex.org/W2159636537","https://openalex.org/W2168435845","https://openalex.org/W2169028566","https://openalex.org/W3216815882"],"related_works":["https://openalex.org/W1848835803","https://openalex.org/W2765925719","https://openalex.org/W2365208004","https://openalex.org/W2767850486","https://openalex.org/W1991158085","https://openalex.org/W4247418548","https://openalex.org/W2110017778","https://openalex.org/W4229070146","https://openalex.org/W2064073692","https://openalex.org/W3208320472"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1],"order":[2],"to":[3,22,64,142,175,195,210,226,231,260],"extract":[4],"meaningful":[5],"information":[6],"from":[7,87,105,193,224,229],"electronic":[8],"medical":[9,102,113],"records,":[10],"such":[11,152],"as":[12,153,276],"signs":[13],"and":[14,17,35,68,94,129,144,148,160,215,228,243,263,269],"symptoms,":[15],"diagnoses,":[16],"treatments,":[18],"it":[19],"is":[20],"important":[21],"take":[23],"into":[24],"account":[25],"the":[26,30,60,65,106,116,134,177,181,185,188,198,203,206,213,219,256],"contextual":[27,44,178],"properties":[28,45,179],"of":[29,42,59,82,101,218,255],"identified":[31,112,122],"information:":[32],"negation,":[33,127],"temporality,":[34,128],"experiencer.":[36],"Most":[37],"work":[38],"on":[39,49],"automatic":[40],"identification":[41,254],"these":[43],"has":[46],"been":[47],"done":[48],"English":[50,61,139],"clinical":[51,71,77,84,182,250,272],"text.":[52],"This":[53],"study":[54],"presents":[55],"ContextD,":[56],"an":[57,191],"adaptation":[58],"ConText":[62,135],"algorithm":[63,170,189,282],"Dutch":[66,70,76,99,143,249,271],"language,":[67],"a":[69,75,98,161,277],"corpus.":[72,183],"We":[73],"created":[74],"corpus":[78,117,273],"containing":[79],"four":[80],"types":[81],"anonymized":[83,268],"documents:":[85],"entries":[86,159],"general":[88,147,157],"practitioners,":[89],"specialists'":[90],"letters,":[91],"radiology":[92],"reports,":[93],"discharge":[95],"letters.":[96],"Using":[97],"list":[100],"terms":[103,114,123,141],"extracted":[104],"Unified":[107],"Medical":[108],"Language":[109],"System,":[110],"we":[111,137],"in":[115,180,240],"with":[118],"exact":[119],"matching.":[120],"The":[121,168,235,267],"were":[124],"annotated":[125,270],"for":[126,156,197,280],"experiencer":[130,204,244],"properties.":[131],"To":[132],"adapt":[133],"algorithm,":[136],"translated":[138],"trigger":[140],"added":[145],"several":[146],"document":[149,200,251],"specific":[150],"enhancements,":[151],"negation":[154,186,242],"rules":[155],"practitioners'":[158],"regular":[162],"expression":[163],"based":[164],"temporality":[165,220,257],"module.":[166],"RESULTS:":[167],"ContextD":[169,236],"utilized":[171],"41":[172],"unique":[173],"triggers":[174],"identify":[176],"For":[184,202,212],"property,":[187,205,221],"obtained":[190],"F-score":[192,207],"87%":[194],"93%":[196],"different":[199],"types.":[201,252],"was":[208],"99%":[209],"100%.":[211],"historical":[214],"hypothetical":[216],"values":[217,246],"F-scores":[222],"ranged":[223],"26%":[225],"54%":[227],"13%":[230],"44%,":[232],"respectively.":[233],"CONCLUSIONS:":[234],"showed":[237],"good":[238],"performance":[239],"identifying":[241],"property":[245,258],"across":[247],"all":[248],"Accurate":[253],"proved":[259],"be":[261],"difficult":[262],"requires":[264],"further":[265,281],"work.":[266],"can":[274],"serve":[275],"useful":[278],"resource":[279],"development.":[283]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
