{"id":"https://openalex.org/W2114466040","doi":"https://doi.org/10.1186/2047-2501-1-4","title":"iPathCaseKEGG: An iPad interface for KEGG metabolic pathways","display_name":"iPathCaseKEGG: An iPad interface for KEGG metabolic pathways","publication_year":2013,"publication_date":"2013-01-10","ids":{"openalex":"https://openalex.org/W2114466040","doi":"https://doi.org/10.1186/2047-2501-1-4","mag":"2114466040","pmid":"https://pubmed.ncbi.nlm.nih.gov/25825656"},"language":"en","primary_location":{"id":"doi:10.1186/2047-2501-1-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2047-2501-1-4","pdf_url":"https://link.springer.com/content/pdf/10.1186%2F2047-2501-1-4.pdf","source":{"id":"https://openalex.org/S4210178793","display_name":"Health Information Science and Systems","issn_l":"2047-2501","issn":["2047-2501"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Information Science and Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1186%2F2047-2501-1-4.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103212491","display_name":"Stephen R. Johnson","orcid":"https://orcid.org/0000-0002-7025-4933"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Stephen R Johnson","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH USA","Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH USA","institution_ids":[]},{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100913092","display_name":"Xinjian Qi","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinjian Qi","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH USA","Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH USA","institution_ids":[]},{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090836372","display_name":"A. Erc\u00fcment \u00c7i\u00e7ek","orcid":"https://orcid.org/0000-0001-8613-6619"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A Ercument Cicek","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH USA","Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH USA","institution_ids":[]},{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016412404","display_name":"G\u00fcltekin \u00d6zsoyo\u011flu","orcid":null},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gultekin Ozsoyoglu","raw_affiliation_strings":["Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH USA","Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, OH USA","institution_ids":[]},{"raw_affiliation_string":"Electrical Engineering and Computer Science Department, Case Western Reserve University, Cleveland, USA","institution_ids":["https://openalex.org/I58956616"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5103212491"],"corresponding_institution_ids":["https://openalex.org/I58956616"],"apc_list":{"value":2790,"currency":"EUR","value_usd":3590},"apc_paid":{"value":2790,"currency":"EUR","value_usd":3590},"fwci":0.5983,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.69484632,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"1","issue":"1","first_page":"4","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.5703999996185303,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.5703999996185303,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11393","display_name":"Biosensors and Analytical Detection","score":0.03449999913573265,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.029999999329447746,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.9768863320350647},{"id":"https://openalex.org/keywords/encyclopedia","display_name":"Encyclopedia","score":0.6898484230041504},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6313859224319458},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6255735158920288},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6123578548431396},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5851701498031616},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5119448900222778},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.43195927143096924},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3706023693084717},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1327696442604065},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09539774060249329}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.9768863320350647},{"id":"https://openalex.org/C148863701","wikidata":"https://www.wikidata.org/wiki/Q5292","display_name":"Encyclopedia","level":2,"score":0.6898484230041504},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6313859224319458},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6255735158920288},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6123578548431396},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5851701498031616},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5119448900222778},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.43195927143096924},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3706023693084717},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1327696442604065},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09539774060249329},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/2047-2501-1-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2047-2501-1-4","pdf_url":"https://link.springer.com/content/pdf/10.1186%2F2047-2501-1-4.pdf","source":{"id":"https://openalex.org/S4210178793","display_name":"Health Information Science and Systems","issn_l":"2047-2501","issn":["2047-2501"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Information Science and Systems","raw_type":"journal-article"},{"id":"pmid:25825656","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25825656","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health information science and systems","raw_type":null},{"id":"pmh:oai:europepmc.org:3339453","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4336120","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2047-2501-1-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2047-2501-1-4","pdf_url":"https://link.springer.com/content/pdf/10.1186%2F2047-2501-1-4.pdf","source":{"id":"https://openalex.org/S4210178793","display_name":"Health Information Science and Systems","issn_l":"2047-2501","issn":["2047-2501"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Health Information Science and Systems","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1846124065","display_name":null,"funder_award_id":"DBI 0849956","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4990787439","display_name":null,"funder_award_id":"CRI 0551603","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5173077141","display_name":"Database-Enabled Tools for Regulatory Metabolic Networks","funder_award_id":"0743705","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6727188481","display_name":"CRI: Infrastructure for Managing and Analyzing Large Scale Biological Data via Utility Computing","funder_award_id":"0551603","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8557371565","display_name":null,"funder_award_id":"DBI 0743705","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2114466040.pdf","grobid_xml":"https://content.openalex.org/works/W2114466040.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1978435670","https://openalex.org/W1998767819","https://openalex.org/W2001914359","https://openalex.org/W2107062718","https://openalex.org/W2111973517","https://openalex.org/W2120599990","https://openalex.org/W2155967165","https://openalex.org/W2159482845","https://openalex.org/W4238014149","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W4225274103","https://openalex.org/W2013728941","https://openalex.org/W2154046714","https://openalex.org/W2579659702","https://openalex.org/W2189613078","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W3003759491","https://openalex.org/W2542318691","https://openalex.org/W2547096368"],"abstract_inverted_index":{"BACKGROUND:":[0],"Kyoto":[1],"Encyclopedia":[2],"of":[3,51,57,94,100,111,137,175,183,213],"Genes":[4],"and":[5,11,31,97,109,125,133,157,171,177,197,215,236],"Genomes":[6],"(KEGG)":[7],"is":[8,120,134],"an":[9,113],"online":[10],"integrated":[12],"molecular":[13],"database":[14],"for":[15,88,116,147,232],"several":[16],"organisms.":[17],"KEGG":[18,43,71,89,117,163,193],"has":[19,130],"been":[20,67,80,131],"a":[21,85,188,229],"highly":[22],"useful":[23,230],"site,":[24],"helping":[25],"domain":[26],"scientists":[27],"understand,":[28],"research,":[29],"study,":[30],"teach":[32],"metabolisms":[33],"by":[34,145],"linking":[35],"sequenced":[36],"genomes":[37],"to":[38,73,191,202,222],"higher":[39],"level":[40],"systematic":[41],"functions.":[42],"databases":[44],"are":[45,61],"accessible":[46],"through":[47],"the":[48,52,55,58,70,92,98,107,140,150,162,180,205,211],"web":[49,59],"pages":[50,174],"system,":[53],"but":[54],"capabilities":[56],"interface":[60,87,115,182,190],"limited.":[62],"Third":[63],"party":[64],"systems":[65],"have":[66,79],"built":[68],"over":[69],"data":[72,206],"provide":[74],"extensive":[75],"functionalities.":[76],"However,":[77],"there":[78],"no":[81],"attempts":[82],"towards":[83],"providing":[84],"tablet":[86],"data.":[90,164,194],"Recognizing":[91],"rise":[93],"mobile":[95,189],"technologies":[96],"importance":[99,212],"tablets":[101,214],"in":[102,139,149,207,218],"education,":[103],"this":[104],"paper":[105],"presents":[106],"design":[108],"implementation":[110],"iPathCase(KEGG),":[112],"iPad":[114],"data,":[118],"which":[119],"empowered":[121],"with":[122,204],"multiple":[123,208],"browsing":[124,156,198],"visualization":[126,159,196],"capabilities.":[127],"RESULTS:":[128],"iPathCase(KEGG)":[129,186,226],"implemented":[132],"available,":[135],"free":[136],"charge,":[138],"Apple":[141],"App":[142],"Store":[143],"(locatable":[144],"searching":[146],"\"Pathcase\"":[148],"app":[151],"store).":[152],"The":[153],"application":[154],"provides":[155,187],"interactive":[158],"functionalities":[160,199],"on":[161],"Users":[165],"can":[166],"pick":[167],"pathways,":[168],"visualize":[169],"them,":[170],"see":[172],"detail":[173],"reactions":[176],"molecules":[178],"using":[179],"multi-touch":[181],"iPad.":[184],"CONCLUSIONS:":[185],"access":[192],"Interactive":[195],"let":[200],"users":[201],"interact":[203],"ways.":[209],"As":[210],"their":[216],"usage":[217],"research":[219],"education":[220],"continue":[221],"rise,":[223],"we":[224],"think":[225],"will":[227],"be":[228],"tool":[231],"life":[233],"science":[234],"instructors":[235],"researchers.":[237]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
