{"id":"https://openalex.org/W1770002433","doi":"https://doi.org/10.1186/2043-9113-5-s1-s16","title":"TRANSFoRm Query Workbench","display_name":"TRANSFoRm Query Workbench","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W1770002433","doi":"https://doi.org/10.1186/2043-9113-5-s1-s16","mag":"1770002433"},"language":"en","primary_location":{"id":"doi:10.1186/2043-9113-5-s1-s16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-5-s1-s16","pdf_url":"https://jclinbioinformatics.biomedcentral.com/track/pdf/10.1186/2043-9113-5-S1-S16","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://jclinbioinformatics.biomedcentral.com/track/pdf/10.1186/2043-9113-5-S1-S16","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026657286","display_name":"Theodoros N. Arvanitis","orcid":"https://orcid.org/0000-0001-5473-135X"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Theodoros N Arvanitis","raw_affiliation_strings":["University of Warwick, Coventry, CV4 7AL, UK","[University Of Warwick, Coventry, UK]"],"affiliations":[{"raw_affiliation_string":"University of Warwick, Coventry, CV4 7AL, UK","institution_ids":["https://openalex.org/I39555362"]},{"raw_affiliation_string":"[University Of Warwick, Coventry, UK]","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062448727","display_name":"Wolfgang Kuchinke","orcid":"https://orcid.org/0000-0002-2809-6900"},"institutions":[{"id":"https://openalex.org/I4210089242","display_name":"D\u00fcsseldorf University Hospital","ror":"https://ror.org/006k2kk72","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210089242"]},{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfgang Kuchinke","raw_affiliation_strings":["Heinrich-Heine University D\u00fcsseldorf, University Hospital, 40225, D\u00fcsseldorf, Germany","Heinrich-Heine University D\u00fcsseldorf, University Hospital, D\u00fcsseldorf, Germany"],"affiliations":[{"raw_affiliation_string":"Heinrich-Heine University D\u00fcsseldorf, University Hospital, 40225, D\u00fcsseldorf, Germany","institution_ids":["https://openalex.org/I44260953","https://openalex.org/I4210089242"]},{"raw_affiliation_string":"Heinrich-Heine University D\u00fcsseldorf, University Hospital, D\u00fcsseldorf, Germany","institution_ids":["https://openalex.org/I44260953","https://openalex.org/I4210089242"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5026657286"],"corresponding_institution_ids":["https://openalex.org/I39555362"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.02864105,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"5","issue":"Suppl 1","first_page":"S16","last_page":"S16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9502999782562256,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.6788330078125},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.6190087199211121},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5030714869499207},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45791664719581604},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3695463538169861},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3536984920501709},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3099740743637085},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10874539613723755},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.09258344769477844},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.08663859963417053}],"concepts":[{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.6788330078125},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.6190087199211121},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5030714869499207},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45791664719581604},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3695463538169861},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3536984920501709},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3099740743637085},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10874539613723755},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.09258344769477844},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.08663859963417053}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/2043-9113-5-s1-s16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-5-s1-s16","pdf_url":"https://jclinbioinformatics.biomedcentral.com/track/pdf/10.1186/2043-9113-5-S1-S16","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:wrap.warwick.ac.uk:69581","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400665","display_name":"Warwick Research Archive Portal (University of Warwick)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39555362","host_organization_name":"University of Warwick","host_organization_lineage":["https://openalex.org/I39555362"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3442881","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4460918","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2043-9113-5-s1-s16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-5-s1-s16","pdf_url":"https://jclinbioinformatics.biomedcentral.com/track/pdf/10.1186/2043-9113-5-S1-S16","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1770002433.pdf","grobid_xml":"https://content.openalex.org/works/W1770002433.grobid-xml"},"referenced_works_count":2,"referenced_works":["https://openalex.org/W1976706199","https://openalex.org/W2163076658"],"related_works":["https://openalex.org/W2388509490","https://openalex.org/W2109648960","https://openalex.org/W2166015079","https://openalex.org/W2050384624","https://openalex.org/W2776888796","https://openalex.org/W2388480422","https://openalex.org/W2624268110","https://openalex.org/W2951120646","https://openalex.org/W2356913294","https://openalex.org/W2903672016"],"abstract_inverted_index":{"Description":[0],"The":[1,47],"Query":[2,51],"Workbench":[3,52],"is":[4,54],"a":[5,69],"tool":[6,73],"of":[7,28,49,68],"the":[8,42,50,57,66],"TRANSFoRm":[9,58],"project":[10],"to":[11,22,31],"support":[12,41],"clinical":[13,29,36,43],"studies":[14,37],"and":[15,25,38],"database":[16],"research.":[17],"It":[18],"provides":[19],"an":[20],"interface":[21],"author,":[23],"store":[24],"deploy":[26],"queries":[27],"data":[30],"identify":[32],"potential":[33],"subjects":[34],"for":[35,74],"can":[39],"thus":[40],"study":[44],"feasibility":[45],"evaluation.":[46],"development":[48],"system":[53],"driven":[55],"by":[56],"Clinical":[59],"Research":[60],"Information":[61],"Model":[62],"(CRIM)":[63],"[1],":[64],"enabling":[65],"creation":[67],"semantically":[70],"aware":[71],"software":[72]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
