{"id":"https://openalex.org/W2099532065","doi":"https://doi.org/10.1186/2043-9113-4-5","title":"FISH Oracle 2: a web server for integrative visualization of genomic data in cancer research","display_name":"FISH Oracle 2: a web server for integrative visualization of genomic data in cancer research","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2099532065","doi":"https://doi.org/10.1186/2043-9113-4-5","mag":"2099532065","pmid":"https://pubmed.ncbi.nlm.nih.gov/24684958"},"language":"en","primary_location":{"id":"doi:10.1186/2043-9113-4-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-4-5","pdf_url":"https://jclinbioinformatics.biomedcentral.com/counter/pdf/10.1186/2043-9113-4-5","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://jclinbioinformatics.biomedcentral.com/counter/pdf/10.1186/2043-9113-4-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012640695","display_name":"Malte M\u00e4der","orcid":"https://orcid.org/0000-0002-4808-2717"},"institutions":[{"id":"https://openalex.org/I4210108711","display_name":"University Medical Center Hamburg-Eppendorf","ror":"https://ror.org/01zgy1s35","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I159176309","https://openalex.org/I4210108711"]},{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Malte Mader","raw_affiliation_strings":["Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146, Hamburg, Germany","Department of Pathology, University Medical Center Hamburg-Eppendorf, Martinistrasse 52, 20246, Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]},{"raw_affiliation_string":"Department of Pathology, University Medical Center Hamburg-Eppendorf, Martinistrasse 52, 20246, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309","https://openalex.org/I4210108711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086499788","display_name":"Ronald Simon","orcid":"https://orcid.org/0000-0003-0158-4258"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I4210108711","display_name":"University Medical Center Hamburg-Eppendorf","ror":"https://ror.org/01zgy1s35","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I159176309","https://openalex.org/I4210108711"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ronald Simon","raw_affiliation_strings":["Department of Pathology, University Medical Center Hamburg-Eppendorf, Martinistrasse 52, 20246, Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, University Medical Center Hamburg-Eppendorf, Martinistrasse 52, 20246, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309","https://openalex.org/I4210108711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060071039","display_name":"Stefan Kurtz","orcid":"https://orcid.org/0000-0001-5783-0054"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Kurtz","raw_affiliation_strings":["Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146 Hamburg, Germany. kurtz@zbh.uni-hamburg.de","Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146, Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146 Hamburg, Germany. kurtz@zbh.uni-hamburg.de","institution_ids":["https://openalex.org/I159176309"]},{"raw_affiliation_string":"Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5012640695"],"corresponding_institution_ids":["https://openalex.org/I159176309","https://openalex.org/I4210108711"],"apc_list":null,"apc_paid":null,"fwci":0.5685,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.67581041,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"4","issue":"1","first_page":"5","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8107506036758423},{"id":"https://openalex.org/keywords/oracle","display_name":"Oracle","score":0.7417348027229309},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7238868474960327},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5281303524971008},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44989389181137085},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.44198042154312134},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4234578013420105},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.41351670026779175},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.36861899495124817},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3329637348651886},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33167803287506104},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32644420862197876},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3208545744419098},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.16501256823539734},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16204291582107544},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.10414484143257141},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07826405763626099}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8107506036758423},{"id":"https://openalex.org/C55166926","wikidata":"https://www.wikidata.org/wiki/Q2892946","display_name":"Oracle","level":2,"score":0.7417348027229309},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7238868474960327},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5281303524971008},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44989389181137085},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.44198042154312134},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4234578013420105},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.41351670026779175},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.36861899495124817},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3329637348651886},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33167803287506104},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32644420862197876},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3208545744419098},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.16501256823539734},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16204291582107544},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.10414484143257141},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07826405763626099},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/2043-9113-4-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-4-5","pdf_url":"https://jclinbioinformatics.biomedcentral.com/counter/pdf/10.1186/2043-9113-4-5","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24684958","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24684958","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of clinical bioinformatics","raw_type":null},{"id":"pmh:oai:www.openagrar.de:timport_mods_00038281","is_oa":true,"landing_page_url":"http://link.springer.com/article/10.1186/2043-9113-4-5","pdf_url":"https://link.springer.com/content/pdf/10.1186/2043-9113-4-5.pdf","source":{"id":"https://openalex.org/S7407055137","display_name":"OpenAgrar","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:article"},{"id":"pmh:oai:europepmc.org:3198841","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4230720","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2043-9113-4-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-4-5","pdf_url":"https://jclinbioinformatics.biomedcentral.com/counter/pdf/10.1186/2043-9113-4-5","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.5099999904632568}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2099532065.pdf","grobid_xml":"https://content.openalex.org/works/W2099532065.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1526884312","https://openalex.org/W1812401750","https://openalex.org/W1867298697","https://openalex.org/W1967456673","https://openalex.org/W1969647281","https://openalex.org/W1977555002","https://openalex.org/W1990095531","https://openalex.org/W1994127362","https://openalex.org/W1998566859","https://openalex.org/W2016565712","https://openalex.org/W2018825948","https://openalex.org/W2054074987","https://openalex.org/W2057167586","https://openalex.org/W2060360855","https://openalex.org/W2070342831","https://openalex.org/W2073208713","https://openalex.org/W2077858999","https://openalex.org/W2082200788","https://openalex.org/W2096403311","https://openalex.org/W2096791516","https://openalex.org/W2102140136","https://openalex.org/W2115646700","https://openalex.org/W2117131162","https://openalex.org/W2117489991","https://openalex.org/W2121158863","https://openalex.org/W2121906867","https://openalex.org/W2122732537","https://openalex.org/W2132522861","https://openalex.org/W2134672574","https://openalex.org/W2136101247","https://openalex.org/W2137607427","https://openalex.org/W2142009178","https://openalex.org/W2142924577","https://openalex.org/W2145477956","https://openalex.org/W2149681218","https://openalex.org/W2150491437","https://openalex.org/W2154519319","https://openalex.org/W2159715390","https://openalex.org/W2166657289","https://openalex.org/W2167155938","https://openalex.org/W2168471784","https://openalex.org/W2259938310","https://openalex.org/W2262414037"],"related_works":["https://openalex.org/W2073713056","https://openalex.org/W3110702597","https://openalex.org/W2125620709","https://openalex.org/W2110441383","https://openalex.org/W2168783124","https://openalex.org/W2045932760","https://openalex.org/W2126958666","https://openalex.org/W4233149903","https://openalex.org/W2791266083","https://openalex.org/W1759033142"],"abstract_inverted_index":{"The":[0,27],"interactive":[1],"nature":[2],"of":[3,17,29,40],"FISH":[4,45],"Oracle":[5,46],"2":[6,47],"and":[7,13,50],"the":[8,38,51],"possibility":[9],"to":[10],"store,":[11],"select":[12],"visualize":[14],"large":[15],"amounts":[16],"downstream":[18],"processed":[19],"data":[20,35],"support":[21],"life":[22],"scientists":[23],"in":[24],"generating":[25],"hypotheses.":[26],"export":[28],"high":[30],"quality":[31],"images":[32],"supports":[33],"explanatory":[34],"visualization,":[36],"simplifying":[37],"communication":[39],"new":[41],"biological":[42],"findings.":[43],"A":[44],"demo":[48],"server":[49],"software":[52],"is":[53],"available":[54],"at":[55],"http://www.zbh.uni-hamburg.de/fishoracle.":[56]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
