{"id":"https://openalex.org/W2118217382","doi":"https://doi.org/10.1186/2043-9113-3-1","title":"Availability of MudPIT data for classification of biological samples","display_name":"Availability of MudPIT data for classification of biological samples","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2118217382","doi":"https://doi.org/10.1186/2043-9113-3-1","mag":"2118217382","pmid":"https://pubmed.ncbi.nlm.nih.gov/23317455"},"language":"en","primary_location":{"id":"doi:10.1186/2043-9113-3-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-3-1","pdf_url":"https://jclinbioinformatics.biomedcentral.com/track/pdf/10.1186/2043-9113-3-1","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://jclinbioinformatics.biomedcentral.com/track/pdf/10.1186/2043-9113-3-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036834669","display_name":"Dario Di Silvestre","orcid":"https://orcid.org/0000-0002-7143-6229"},"institutions":[{"id":"https://openalex.org/I4210154278","display_name":"Institute of Biomedical Technologies","ror":"https://ror.org/04ehykb85","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210154278","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Dario Silvestre","raw_affiliation_strings":["Institute for Biomedical Technologies (ITB-CNR), via F.lli Cervi 93, Segrate (Milan), Italy",", Institute for Biomedical Technologies (ITB-CNR), via F.lli Cervi 93, Segrate (Milan), Italy"],"affiliations":[{"raw_affiliation_string":"Institute for Biomedical Technologies (ITB-CNR), via F.lli Cervi 93, Segrate (Milan), Italy","institution_ids":["https://openalex.org/I4210154278"]},{"raw_affiliation_string":", Institute for Biomedical Technologies (ITB-CNR), via F.lli Cervi 93, Segrate (Milan), Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047943010","display_name":"Italo Zoppis","orcid":"https://orcid.org/0000-0001-7312-7123"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Italo Zoppis","raw_affiliation_strings":["Department of Informatics, Systems and Communication, Viale Sarca 336, University of Milano-Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, Viale Sarca 336, University of Milano-Bicocca, Milan, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001779495","display_name":"Francesca Brambilla","orcid":"https://orcid.org/0000-0002-9532-175X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Francesca Brambilla","raw_affiliation_strings":[", Institute for Biomedical Technologies (ITB-CNR), via F.lli Cervi 93, Segrate (Milan), Italy"],"affiliations":[{"raw_affiliation_string":", Institute for Biomedical Technologies (ITB-CNR), via F.lli Cervi 93, Segrate (Milan), Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021199849","display_name":"Valeria Bellettato","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Valeria Bellettato","raw_affiliation_strings":[", Institute for Biomedical Technologies (ITB-CNR), via F.lli Cervi 93, Segrate (Milan), Italy"],"affiliations":[{"raw_affiliation_string":", Institute for Biomedical Technologies (ITB-CNR), via F.lli Cervi 93, Segrate (Milan), Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073163964","display_name":"Giancarlo Mauri","orcid":"https://orcid.org/0000-0003-3520-4022"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Giancarlo Mauri","raw_affiliation_strings":["Department of Informatics, Systems and Communication, Viale Sarca 336, University of Milano-Bicocca, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication, Viale Sarca 336, University of Milano-Bicocca, Milan, Italy","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086671760","display_name":"Pierluigi Mauri","orcid":"https://orcid.org/0000-0003-4364-0393"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pierluigi Mauri","raw_affiliation_strings":[", Institute for Biomedical Technologies (ITB-CNR), via F.lli Cervi 93, Segrate (Milan), Italy"],"affiliations":[{"raw_affiliation_string":", Institute for Biomedical Technologies (ITB-CNR), via F.lli Cervi 93, Segrate (Milan), Italy","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5036834669"],"corresponding_institution_ids":["https://openalex.org/I4210154278"],"apc_list":null,"apc_paid":null,"fwci":1.647,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.83769592,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"3","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.5351570248603821},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3883189857006073},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34137964248657227},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33331099152565},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.28156399726867676},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.08144578337669373},{"id":"https://openalex.org/keywords/public-health","display_name":"Public health","score":0.06132045388221741}],"concepts":[{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.5351570248603821},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3883189857006073},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34137964248657227},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33331099152565},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.28156399726867676},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.08144578337669373},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.06132045388221741}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/2043-9113-3-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-3-1","pdf_url":"https://jclinbioinformatics.biomedcentral.com/track/pdf/10.1186/2043-9113-3-1","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23317455","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23317455","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of clinical bioinformatics","raw_type":null},{"id":"pmh:oai:boa.unimib.it:10281/42736","is_oa":true,"landing_page_url":"http://hdl.handle.net/10281/42736","pdf_url":"http://hdl.handle.net/10281/42736","source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2567831","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3563498","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3563498","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3563498","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Clin Bioinforma","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2043-9113-3-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-3-1","pdf_url":"https://jclinbioinformatics.biomedcentral.com/track/pdf/10.1186/2043-9113-3-1","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G1638060741","display_name":null,"funder_award_id":"2010-0653","funder_id":"https://openalex.org/F4320321499","funder_display_name":"Fondazione Cariplo"}],"funders":[{"id":"https://openalex.org/F4320321499","display_name":"Fondazione Cariplo","ror":"https://ror.org/01gb56c55"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2118217382.pdf","grobid_xml":"https://content.openalex.org/works/W2118217382.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W53188351","https://openalex.org/W343929833","https://openalex.org/W1508165357","https://openalex.org/W1520743566","https://openalex.org/W1546962148","https://openalex.org/W1556310958","https://openalex.org/W1563088657","https://openalex.org/W1922017469","https://openalex.org/W1951647241","https://openalex.org/W1965940169","https://openalex.org/W1973744739","https://openalex.org/W1976156057","https://openalex.org/W1976200636","https://openalex.org/W1976217821","https://openalex.org/W1982304467","https://openalex.org/W1989299822","https://openalex.org/W1993378469","https://openalex.org/W1997504014","https://openalex.org/W1998546517","https://openalex.org/W2002264839","https://openalex.org/W2002844202","https://openalex.org/W2004398193","https://openalex.org/W2007539528","https://openalex.org/W2009611145","https://openalex.org/W2011908176","https://openalex.org/W2014340859","https://openalex.org/W2017628879","https://openalex.org/W2033492777","https://openalex.org/W2037306412","https://openalex.org/W2042504727","https://openalex.org/W2049062317","https://openalex.org/W2058172101","https://openalex.org/W2063543381","https://openalex.org/W2068622429","https://openalex.org/W2072197604","https://openalex.org/W2075293926","https://openalex.org/W2079843936","https://openalex.org/W2093195231","https://openalex.org/W2111865342","https://openalex.org/W2116894425","https://openalex.org/W2116923698","https://openalex.org/W2117600080","https://openalex.org/W2119467972","https://openalex.org/W2119878039","https://openalex.org/W2140985419","https://openalex.org/W2170038291","https://openalex.org/W2503993098","https://openalex.org/W2514612524","https://openalex.org/W2608799023"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W2586801360","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725"],"abstract_inverted_index":{"These":[0],"findings":[1],"confirm":[2],"the":[3,6,22,27,50],"availability":[4],"of":[5,14,29,36,52],"most":[7],"label-free":[8],"quantitative":[9],"methods":[10],"based":[11],"on":[12],"processing":[13],"spectral":[15],"count":[16],"and":[17,43,55],"SEQUEST-based":[18],"SCORE":[19],"values.":[20],"On":[21],"other":[23],"hand,":[24],"it":[25,56],"stresses":[26],"usefulness":[28],"MudPIT":[30],"data":[31],"for":[32],"a":[33,58],"correct":[34],"grouping":[35],"sample":[37],"phenotypes,":[38],"by":[39],"applying":[40],"both":[41],"supervised":[42],"unsupervised":[44],"learning":[45],"algorithms.":[46],"This":[47],"capacity":[48],"permit":[49],"evaluation":[51],"actual":[53],"samples":[54],"is":[57],"good":[59],"starting":[60],"point":[61],"to":[62,66],"translate":[63],"proteomic":[64],"methodology":[65],"clinical":[67],"application.":[68]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
