{"id":"https://openalex.org/W2142009178","doi":"https://doi.org/10.1186/2043-9113-1-20","title":"FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context","display_name":"FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2142009178","doi":"https://doi.org/10.1186/2043-9113-1-20","mag":"2142009178","pmid":"https://pubmed.ncbi.nlm.nih.gov/21884636"},"language":"en","primary_location":{"id":"doi:10.1186/2043-9113-1-20","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-1-20","pdf_url":"https://jclinbioinformatics.biomedcentral.com/counter/pdf/10.1186/2043-9113-1-20","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://jclinbioinformatics.biomedcentral.com/counter/pdf/10.1186/2043-9113-1-20","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012640695","display_name":"Malte M\u00e4der","orcid":"https://orcid.org/0000-0002-4808-2717"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I4210108711","display_name":"University Medical Center Hamburg-Eppendorf","ror":"https://ror.org/01zgy1s35","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I159176309","https://openalex.org/I4210108711"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Malte Mader","raw_affiliation_strings":["Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146 Hamburg, Germany. kurtz@zbh.uni-hamburg.de","Department of Pathology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146 Hamburg, Germany. kurtz@zbh.uni-hamburg.de","institution_ids":["https://openalex.org/I159176309"]},{"raw_affiliation_string":"Department of Pathology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany","institution_ids":["https://openalex.org/I4210108711","https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086499788","display_name":"Ronald Simon","orcid":"https://orcid.org/0000-0003-0158-4258"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I4210108711","display_name":"University Medical Center Hamburg-Eppendorf","ror":"https://ror.org/01zgy1s35","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I159176309","https://openalex.org/I4210108711"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ronald Simon","raw_affiliation_strings":["Department of Pathology, University Medical Center Hamburg-Eppendorf, Martinistrasse 52, 20246, Hamburg, Germany","Department of Pathology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, University Medical Center Hamburg-Eppendorf, Martinistrasse 52, 20246, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309","https://openalex.org/I4210108711"]},{"raw_affiliation_string":"Department of Pathology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany","institution_ids":["https://openalex.org/I4210108711","https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048978715","display_name":"Sascha Steinbiss","orcid":"https://orcid.org/0000-0002-2151-0574"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sascha Steinbiss","raw_affiliation_strings":["Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146, Hamburg, Germany","Center for Bioinformatics, University of Hamburg Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]},{"raw_affiliation_string":"Center for Bioinformatics, University of Hamburg Hamburg, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060071039","display_name":"Stefan Kurtz","orcid":"https://orcid.org/0000-0001-5783-0054"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Kurtz","raw_affiliation_strings":["Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146, Hamburg, Germany","Center for Bioinformatics, University of Hamburg Hamburg, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, University of Hamburg, Bundesstrasse 43, 20146, Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]},{"raw_affiliation_string":"Center for Bioinformatics, University of Hamburg Hamburg, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5012640695"],"corresponding_institution_ids":["https://openalex.org/I159176309","https://openalex.org/I4210108711"],"apc_list":null,"apc_paid":null,"fwci":1.2007,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.78421418,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"1","issue":"1","first_page":"20","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7489914894104004},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6796786785125732},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.6467227935791016},{"id":"https://openalex.org/keywords/oracle","display_name":"Oracle","score":0.6311022043228149},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5814641714096069},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5157368779182434},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5013415813446045},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3963567912578583},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3329472243785858},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3194035291671753},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.2900416851043701},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.24157550930976868},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2030566930770874},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.11786660552024841},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1148415207862854},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09672203660011292},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0893983542919159}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7489914894104004},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6796786785125732},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.6467227935791016},{"id":"https://openalex.org/C55166926","wikidata":"https://www.wikidata.org/wiki/Q2892946","display_name":"Oracle","level":2,"score":0.6311022043228149},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5814641714096069},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5157368779182434},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5013415813446045},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3963567912578583},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3329472243785858},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3194035291671753},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2900416851043701},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.24157550930976868},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2030566930770874},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.11786660552024841},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1148415207862854},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09672203660011292},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0893983542919159},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/2043-9113-1-20","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-1-20","pdf_url":"https://jclinbioinformatics.biomedcentral.com/counter/pdf/10.1186/2043-9113-1-20","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21884636","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21884636","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of clinical bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3164613","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3164613","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Clin Bioinforma","raw_type":"Text"},{"id":"pmh:oai:www.openagrar.de:timport_mods_00038280","is_oa":false,"landing_page_url":"https://doi.org/DOI:10.1186/2043-9113-1-20","pdf_url":null,"source":{"id":"https://openalex.org/S7407055137","display_name":"OpenAgrar","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:article"}],"best_oa_location":{"id":"doi:10.1186/2043-9113-1-20","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-1-20","pdf_url":"https://jclinbioinformatics.biomedcentral.com/counter/pdf/10.1186/2043-9113-1-20","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life below water","score":0.4000000059604645,"id":"https://metadata.un.org/sdg/14"}],"awards":[{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G4455065853","display_name":"Verbundprojekt: Prostatakrebs; Anteil Martini-Klinik (Teilprojekt 1)","funder_award_id":"01GS08189","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G4537404112","display_name":"Verbundprojekt: Genomnetz Umweltbedingte Erkrankungen: \u00c4tiologie der atopischen Dermatitis, Anteil TU M\u00fcnchen","funder_award_id":"01GS0818","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7225624288","display_name":null,"funder_award_id":"This work was","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320329739","display_name":"Werner Otto Stiftung","ror":"https://ror.org/015152t55"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142009178.pdf","grobid_xml":"https://content.openalex.org/works/W2142009178.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W77717277","https://openalex.org/W1516095885","https://openalex.org/W1549400247","https://openalex.org/W1558735849","https://openalex.org/W1890977437","https://openalex.org/W2001630698","https://openalex.org/W2012884498","https://openalex.org/W2013318867","https://openalex.org/W2013444425","https://openalex.org/W2017535462","https://openalex.org/W2021341670","https://openalex.org/W2024858956","https://openalex.org/W2026662234","https://openalex.org/W2035486209","https://openalex.org/W2057217795","https://openalex.org/W2066721762","https://openalex.org/W2094678200","https://openalex.org/W2100725331","https://openalex.org/W2102140136","https://openalex.org/W2107633226","https://openalex.org/W2117489991","https://openalex.org/W2117905749","https://openalex.org/W2119274764","https://openalex.org/W2121158863","https://openalex.org/W2124435172","https://openalex.org/W2128016314","https://openalex.org/W2133111499","https://openalex.org/W2133174470","https://openalex.org/W2133360710","https://openalex.org/W2133842554","https://openalex.org/W2136723735","https://openalex.org/W2137970956","https://openalex.org/W2140494954","https://openalex.org/W2142614714","https://openalex.org/W2145477956","https://openalex.org/W2148879747","https://openalex.org/W2151506973","https://openalex.org/W2152710395","https://openalex.org/W2152773186","https://openalex.org/W2153034084","https://openalex.org/W2153764234","https://openalex.org/W2156134725","https://openalex.org/W2158392984","https://openalex.org/W2158435278","https://openalex.org/W2160191633","https://openalex.org/W2164147743","https://openalex.org/W2164941782","https://openalex.org/W2167155938","https://openalex.org/W2168730720","https://openalex.org/W2169547867","https://openalex.org/W2612240612"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2474469336","https://openalex.org/W2391431582","https://openalex.org/W2374451721","https://openalex.org/W2029213262","https://openalex.org/W2351198180","https://openalex.org/W2360118089","https://openalex.org/W2385641226","https://openalex.org/W3089086452","https://openalex.org/W2585522343"],"abstract_inverted_index":{"FISH":[0,38,64],"Oracle":[1,39,65],"offers":[2],"a":[3],"fast":[4],"and":[5,14,47,55,67],"easy":[6],"to":[7,43],"use":[8],"visualization":[9],"tool":[10],"for":[11,20],"array":[12,16],"CGH":[13],"SNP":[15],"data.":[17],"It":[18],"allows":[19],"the":[21,53],"identification":[22],"of":[23,58],"genomic":[24,56],"regions":[25],"representing":[26],"minimal":[27],"common":[28],"changes":[29],"based":[30,51],"on":[31,52],"data":[32],"from":[33],"one":[34],"or":[35],"more":[36],"experiments.":[37],"will":[40],"be":[41],"instrumental":[42],"identify":[44],"candidate":[45],"onco":[46],"tumor":[48],"suppressor":[49],"genes":[50],"frequency":[54],"position":[57],"DNA":[59],"copy":[60],"number":[61],"changes.":[62],"The":[63],"application":[66],"an":[68],"installed":[69],"demo":[70],"web":[71],"server":[72],"are":[73],"available":[74],"at":[75],"http://www.zbh.uni-hamburg.de/fishoracle.":[76]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
