{"id":"https://openalex.org/W2166552545","doi":"https://doi.org/10.1186/2043-9113-1-18","title":"Automated generation of massive image knowledge collections using Microsoft Live Labs Pivot to promote neuroimaging and translational research","display_name":"Automated generation of massive image knowledge collections using Microsoft Live Labs Pivot to promote neuroimaging and translational research","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2166552545","doi":"https://doi.org/10.1186/2043-9113-1-18","mag":"2166552545","pmid":"https://pubmed.ncbi.nlm.nih.gov/21884637"},"language":"en","primary_location":{"id":"doi:10.1186/2043-9113-1-18","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-1-18","pdf_url":"https://jclinbioinformatics.biomedcentral.com/track/pdf/10.1186/2043-9113-1-18","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://jclinbioinformatics.biomedcentral.com/track/pdf/10.1186/2043-9113-1-18","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066901628","display_name":"Teeradache Viangteeravat","orcid":"https://orcid.org/0000-0002-1337-1762"},"institutions":[{"id":"https://openalex.org/I160606119","display_name":"University of Tennessee Health Science Center","ror":"https://ror.org/0011qv509","country_code":"US","type":"education","lineage":["https://openalex.org/I160606119"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Teeradache Viangteeravat","raw_affiliation_strings":["Clinical and Translational Science Institute University of Tennessee Health Science Center, Memphis, TN 38163, USA. manyanwu@uthsc.edu","Clinical and Translational Science Institute University of Tennessee Health Science Center, Memphis, TN, 38163, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical and Translational Science Institute University of Tennessee Health Science Center, Memphis, TN 38163, USA. manyanwu@uthsc.edu","institution_ids":[]},{"raw_affiliation_string":"Clinical and Translational Science Institute University of Tennessee Health Science Center, Memphis, TN, 38163, USA","institution_ids":["https://openalex.org/I160606119"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058646635","display_name":"Matthew N Anyanwu","orcid":null},"institutions":[{"id":"https://openalex.org/I160606119","display_name":"University of Tennessee Health Science Center","ror":"https://ror.org/0011qv509","country_code":"US","type":"education","lineage":["https://openalex.org/I160606119"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew N Anyanwu","raw_affiliation_strings":["Clinical and Translational Science Institute University of Tennessee Health Science Center, Memphis, TN, 38163, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical and Translational Science Institute University of Tennessee Health Science Center, Memphis, TN, 38163, USA","institution_ids":["https://openalex.org/I160606119"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018603058","display_name":"Venkateswara Ra Nagisetty","orcid":null},"institutions":[{"id":"https://openalex.org/I160606119","display_name":"University of Tennessee Health Science Center","ror":"https://ror.org/0011qv509","country_code":"US","type":"education","lineage":["https://openalex.org/I160606119"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Venkateswara Ra Nagisetty","raw_affiliation_strings":["Clinical and Translational Science Institute University of Tennessee Health Science Center, Memphis, TN, 38163, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical and Translational Science Institute University of Tennessee Health Science Center, Memphis, TN, 38163, USA","institution_ids":["https://openalex.org/I160606119"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072184856","display_name":"Emin Kuscu","orcid":null},"institutions":[{"id":"https://openalex.org/I160606119","display_name":"University of Tennessee Health Science Center","ror":"https://ror.org/0011qv509","country_code":"US","type":"education","lineage":["https://openalex.org/I160606119"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emin Kuscu","raw_affiliation_strings":["Clinical and Translational Science Institute University of Tennessee Health Science Center, Memphis, TN, 38163, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical and Translational Science Institute University of Tennessee Health Science Center, Memphis, TN, 38163, USA","institution_ids":["https://openalex.org/I160606119"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5066901628"],"corresponding_institution_ids":["https://openalex.org/I160606119"],"apc_list":null,"apc_paid":null,"fwci":0.7049,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.82090563,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"1","issue":"1","first_page":"18","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.6509000062942505,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.6509000062942505,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.03720000013709068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.03420000150799751,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8203179836273193},{"id":"https://openalex.org/keywords/neuroinformatics","display_name":"Neuroinformatics","score":0.4835955500602722},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4718363583087921},{"id":"https://openalex.org/keywords/zoom","display_name":"Zoom","score":0.4452654719352722},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4425998032093048},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4406697750091553},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4292863607406616},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3780378997325897},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.23609906435012817},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.2251872420310974}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8203179836273193},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.4835955500602722},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4718363583087921},{"id":"https://openalex.org/C124913957","wikidata":"https://www.wikidata.org/wiki/Q1232548","display_name":"Zoom","level":3,"score":0.4452654719352722},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4425998032093048},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4406697750091553},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4292863607406616},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3780378997325897},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.23609906435012817},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2251872420310974},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C78762247","wikidata":"https://www.wikidata.org/wiki/Q1273174","display_name":"Petroleum engineering","level":1,"score":0.0},{"id":"https://openalex.org/C15336307","wikidata":"https://www.wikidata.org/wiki/Q1766051","display_name":"Lens (geology)","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/2043-9113-1-18","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-1-18","pdf_url":"https://jclinbioinformatics.biomedcentral.com/track/pdf/10.1186/2043-9113-1-18","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21884637","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21884637","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of clinical bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3164611","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3164611","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Clin Bioinforma","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2043-9113-1-18","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2043-9113-1-18","pdf_url":"https://jclinbioinformatics.biomedcentral.com/track/pdf/10.1186/2043-9113-1-18","source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2166552545.pdf","grobid_xml":"https://content.openalex.org/works/W2166552545.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1844177","https://openalex.org/W1512713669","https://openalex.org/W2008800987","https://openalex.org/W2033459874","https://openalex.org/W2033719908","https://openalex.org/W2071655208","https://openalex.org/W2084772990","https://openalex.org/W2091988419","https://openalex.org/W2096853544","https://openalex.org/W2098404873","https://openalex.org/W2112783609","https://openalex.org/W2118702845","https://openalex.org/W2151530263","https://openalex.org/W2165934723","https://openalex.org/W2166631541","https://openalex.org/W2166920054","https://openalex.org/W2319280219","https://openalex.org/W2326913839"],"related_works":["https://openalex.org/W1997225928","https://openalex.org/W4252762947","https://openalex.org/W2053925947","https://openalex.org/W2085671670","https://openalex.org/W1993597101","https://openalex.org/W1991764069","https://openalex.org/W2027016811","https://openalex.org/W2330475501","https://openalex.org/W2356374322","https://openalex.org/W2728147905"],"abstract_inverted_index":{"BACKGROUND:":[0],"Massive":[1],"datasets":[2],"comprising":[3],"high-resolution":[4,72,229],"images,":[5],"generated":[6,260],"in":[7,11,27,91],"neuro-imaging":[8,81],"studies":[9],"and":[10,23,29,58,74,96,107,158,183,193,254,279,291,324,350],"clinical":[12,28,345],"imaging":[13],"research,":[14],"are":[15],"increasingly":[16],"challenging":[17],"our":[18],"ability":[19,41],"to":[20,42,52,60,111,211,244,288,292,303,308,348],"analyze,":[21],"share,":[22],"filter":[24],"such":[25,79,189],"images":[26,73,230],"basic":[30],"translational":[31],"research.":[32],"Pivot":[33,129,146,206,338],"collection":[34,313],"exploratory":[35],"analysis":[36],"provides":[37],"each":[38],"user":[39],"the":[40,46,66,84,99,113,118,132,137,144,165,191,197,201,221,235,246,251,309,318,333,353,367],"fully":[43,53],"interact":[44],"with":[45,173,228,299],"massive":[47,67,186],"amounts":[48],"of":[49,71,98,185,196,215,282,335,344],"visual":[50,100,207],"data":[51,69,94,101,119,272],"facilitate":[54],"sufficient":[55],"sorting,":[56],"flexibility":[57],"speed":[59],"fluidly":[61],"access,":[62],"explore":[63],"or":[64],"analyze":[65,212],"image":[68,187,337,354,368],"sets":[70],"their":[75],"associated":[76],"meta":[77,108],"information,":[78],"as":[80,190,269,271],"databases":[82],"from":[83,200,220,261],"Allen":[85,202,222,236],"Brain":[86,203,223,237],"Atlas.":[87,204,224],"It":[88,161,240],"is":[89,162,241,286,360],"used":[90,176,210,243,287],"clustering,":[92],"filtering,":[93],"sharing":[95],"classifying":[97],"into":[102],"various":[103,252],"deep":[104],"zoom":[105],"levels":[106],"information":[109,248],"categories":[110,253],"detect":[112],"underlying":[114],"hidden":[115,247],"pattern":[116],"within":[117],"set":[120],"that":[121,164,359],"has":[122,331],"been":[123],"used.":[124],"METHOD:":[125],"We":[126,141],"deployed":[127],"prototype":[128,145,214],"collections":[130,147,188,355],"using":[131,234,258,317],"Linux":[133],"CentOS":[134],"running":[135],"on":[136,148,250],"Apache":[138],"web":[139],"server.":[140],"also":[142],"tested":[143],"other":[149,174,297],"operating":[150],"systems":[151],"like":[152,267,276],"Windows":[153],"(the":[154],"most":[155],"common":[156],"variants)":[157],"UNIX,":[159],"etc.":[160],"demonstrated":[163],"approach":[166],"yields":[167],"very":[168],"good":[169],"results":[170],"when":[171],"compared":[172],"approaches":[175],"by":[177,257],"some":[178],"researchers":[179],"for":[180,273,362],"generation,":[181],"creation,":[182],"clustering":[184],"coronal":[192],"horizontal":[194],"sections":[195],"mouse":[198,310],"brain":[199,311],"RESULTS:":[205],"analytics":[208],"was":[209],"a":[213,283,300,357],"dataset":[216],"Dab2":[217],"co-expressed":[218],"genes":[219,298],"The":[225],"metadata":[226,265],"along":[227],"were":[231],"automatically":[232],"extracted":[233],"Atlas":[238],"API.":[239],"then":[242],"identify":[245],"based":[249],"conditions":[255],"applied":[256],"options":[259],"automated":[262,332],"collection.":[263],"A":[264],"category":[266],"chromosome,":[268],"well":[270],"individual":[274],"cases":[275],"sex,":[277],"age,":[278],"plan":[280],"attributes":[281],"particular":[284],"gene,":[285],"filter,":[289],"sort":[290],"determine":[293],"if":[294],"there":[295],"exist":[296],"similar":[301],"characteristics":[302],"Dab2.":[304],"And":[305],"online":[306],"access":[307],"pivot":[312],"can":[314],"be":[315],"viewed":[316],"link":[319],"http://edtech-dev.uthsc.edu/CTSI/teeDev1/unittest/PaPa/collection.html":[320],"(user":[321],"name:":[322],"tviangte":[323],"password:":[325],"demome)":[326],"CONCLUSIONS:":[327],"Our":[328],"proposed":[329],"algorithm":[330],"creation":[334],"large":[336],"collections;":[339],"this":[340],"will":[341],"enable":[342],"investigators":[343],"research":[346],"projects":[347],"easily":[349],"quickly":[351],"analyse":[352],"through":[356],"perspective":[358],"useful":[361],"making":[363],"critical":[364],"decisions":[365],"about":[366],"patterns":[369],"discovered.":[370]},"counts_by_year":[{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
