{"id":"https://openalex.org/W2108731396","doi":"https://doi.org/10.1186/2041-1480-5-s1-s3","title":"Semantic Web repositories for genomics data using the eXframe platform","display_name":"Semantic Web repositories for genomics data using the eXframe platform","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2108731396","doi":"https://doi.org/10.1186/2041-1480-5-s1-s3","mag":"2108731396","pmid":"https://pubmed.ncbi.nlm.nih.gov/25093072"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-5-s1-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-s1-s3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-S1-S3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-S1-S3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091783288","display_name":"Emily Merrill","orcid":"https://orcid.org/0000-0003-2001-1623"},"institutions":[{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I48633490","display_name":"Mass General Brigham","ror":"https://ror.org/04py2rh25","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Emily Merrill","raw_affiliation_strings":["Massachusetts General Hospital, Partners Research Building, 65 Landsdowne St, Cambridge, MA, 02139, USA","Massachusetts General Hospital, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Massachusetts General Hospital, Partners Research Building, 65 Landsdowne St, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I48633490"]},{"raw_affiliation_string":"Massachusetts General Hospital, Cambridge, USA","institution_ids":["https://openalex.org/I4210087915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076060005","display_name":"St\u00e9phane Corlosquet","orcid":null},"institutions":[{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I48633490","display_name":"Mass General Brigham","ror":"https://ror.org/04py2rh25","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"St\u00e9phane Corlosquet","raw_affiliation_strings":["Massachusetts General Hospital, Partners Research Building, 65 Landsdowne St, Cambridge, MA, 02139, USA","Massachusetts General Hospital, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Massachusetts General Hospital, Partners Research Building, 65 Landsdowne St, Cambridge, MA, 02139, USA","institution_ids":["https://openalex.org/I48633490"]},{"raw_affiliation_string":"Massachusetts General Hospital, Cambridge, USA","institution_ids":["https://openalex.org/I4210087915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054153288","display_name":"Paolo Ciccarese","orcid":"https://orcid.org/0000-0002-5156-2703"},"institutions":[{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paolo Ciccarese","raw_affiliation_strings":["Massachusetts General Hospital, Partners Research Building, 65 Landsdowne St, Cambridge, MA, 02139, USA ; Harvard Medical School, 25 Shattuck St, Boston, MA, 02115, USA","Massachusetts General Hospital, Cambridge, USA","Harvard Medical School, Boston, USA"],"affiliations":[{"raw_affiliation_string":"Massachusetts General Hospital, Partners Research Building, 65 Landsdowne St, Cambridge, MA, 02139, USA ; Harvard Medical School, 25 Shattuck St, Boston, MA, 02115, USA","institution_ids":[]},{"raw_affiliation_string":"Massachusetts General Hospital, Cambridge, USA","institution_ids":["https://openalex.org/I4210087915"]},{"raw_affiliation_string":"Harvard Medical School, Boston, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007020202","display_name":"Tim W. Clark","orcid":"https://orcid.org/0000-0003-4060-7360"},"institutions":[{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Tim Clark","raw_affiliation_strings":["Massachusetts General Hospital, Partners Research Building, 65 Landsdowne St, Cambridge, MA, 02139, USA ; Harvard Medical School, 25 Shattuck St, Boston, MA, 02115, USA ; School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","School of Computer Science, University of Manchester, Manchester, UK","Harvard Medical School, Boston, USA","Massachusetts General Hospital, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Massachusetts General Hospital, Partners Research Building, 65 Landsdowne St, Cambridge, MA, 02139, USA ; Harvard Medical School, 25 Shattuck St, Boston, MA, 02115, USA ; School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Harvard Medical School, Boston, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Massachusetts General Hospital, Cambridge, USA","institution_ids":["https://openalex.org/I4210087915"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062048275","display_name":"Sudeshna Das","orcid":"https://orcid.org/0000-0002-9486-6811"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210087915","display_name":"Massachusetts General Hospital","ror":"https://ror.org/002pd6e78","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087915","https://openalex.org/I48633490"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sudeshna Das","raw_affiliation_strings":["Massachusetts General Hospital, Partners Research Building, 65 Landsdowne St, Cambridge, MA, 02139, USA ; Harvard Medical School, 25 Shattuck St, Boston, MA, 02115, USA","Harvard Medical School, Boston, USA","Massachusetts General Hospital, Cambridge, USA"],"affiliations":[{"raw_affiliation_string":"Massachusetts General Hospital, Partners Research Building, 65 Landsdowne St, Cambridge, MA, 02139, USA ; Harvard Medical School, 25 Shattuck St, Boston, MA, 02115, USA","institution_ids":[]},{"raw_affiliation_string":"Harvard Medical School, Boston, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Massachusetts General Hospital, Cambridge, USA","institution_ids":["https://openalex.org/I4210087915"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5062048275","https://openalex.org/A5076060005","https://openalex.org/A5091783288"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I48633490"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":1.4233,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.81334582,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"5","issue":"Suppl 1","first_page":"S3","last_page":"S3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9847000241279602,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.9097244739532471},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.858582615852356},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.7747952938079834},{"id":"https://openalex.org/keywords/linked-data","display_name":"Linked data","score":0.6226538419723511},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5949364900588989},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5109440684318542},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.4811755120754242},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.46500644087791443},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4492640495300293},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4199371337890625},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.41504353284835815},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3534778952598572},{"id":"https://openalex.org/keywords/semantic-web-stack","display_name":"Semantic Web Stack","score":0.27044034004211426},{"id":"https://openalex.org/keywords/owl-s","display_name":"OWL-S","score":0.13005194067955017}],"concepts":[{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.9097244739532471},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.858582615852356},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.7747952938079834},{"id":"https://openalex.org/C69075417","wikidata":"https://www.wikidata.org/wiki/Q515701","display_name":"Linked data","level":3,"score":0.6226538419723511},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5949364900588989},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5109440684318542},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.4811755120754242},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.46500644087791443},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4492640495300293},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4199371337890625},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.41504353284835815},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3534778952598572},{"id":"https://openalex.org/C167379230","wikidata":"https://www.wikidata.org/wiki/Q1026884","display_name":"Semantic Web Stack","level":3,"score":0.27044034004211426},{"id":"https://openalex.org/C50382505","wikidata":"https://www.wikidata.org/wiki/Q2553356","display_name":"OWL-S","level":4,"score":0.13005194067955017},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/2041-1480-5-s1-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-s1-s3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-S1-S3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:25093072","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25093072","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:dash.harvard.edu:1/12785937","is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:12785937","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4108874","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4108874","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-5-s1-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-s1-s3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-S1-S3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332616","display_name":"Harvard Stem Cell Institute","ror":"https://ror.org/04kj1hn59"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108731396.pdf","grobid_xml":"https://content.openalex.org/works/W2108731396.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1544923801","https://openalex.org/W1786566120","https://openalex.org/W1860011742","https://openalex.org/W1977918192","https://openalex.org/W2020541351","https://openalex.org/W2024858956","https://openalex.org/W2044257395","https://openalex.org/W2046614649","https://openalex.org/W2050554833","https://openalex.org/W2052522161","https://openalex.org/W2084975981","https://openalex.org/W2098303558","https://openalex.org/W2098896780","https://openalex.org/W2104087541","https://openalex.org/W2106980948","https://openalex.org/W2108731396","https://openalex.org/W2113142309","https://openalex.org/W2124308436","https://openalex.org/W2128386749","https://openalex.org/W2130430745","https://openalex.org/W2138453085","https://openalex.org/W2140611297","https://openalex.org/W2140665097","https://openalex.org/W2144303444","https://openalex.org/W2147018385","https://openalex.org/W2149378423","https://openalex.org/W2159092541","https://openalex.org/W2160697532","https://openalex.org/W2161036175","https://openalex.org/W2165428180","https://openalex.org/W2169049983","https://openalex.org/W2170506866","https://openalex.org/W2318935314","https://openalex.org/W2751916857","https://openalex.org/W3103908354","https://openalex.org/W3122709706","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W199330785","https://openalex.org/W2615202182","https://openalex.org/W98016204","https://openalex.org/W2904139343","https://openalex.org/W2101525042","https://openalex.org/W2767591199","https://openalex.org/W1591429950","https://openalex.org/W2563388676","https://openalex.org/W4388184885","https://openalex.org/W4322622679"],"abstract_inverted_index":{"Using":[0],"the":[1,26],"open-source":[2],"eXframe":[3],"software,":[4],"institutions":[5],"and":[6,21],"laboratories":[7],"can":[8],"create":[9],"Semantic":[10,28],"Web":[11,29],"repositories":[12],"of":[13,30],"their":[14],"experiments,":[15],"integrate":[16],"it":[17,23],"with":[18,25],"heterogeneous":[19],"resources":[20],"make":[22],"interoperable":[24],"vast":[27],"biomedical":[31],"knowledge.":[32]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
