{"id":"https://openalex.org/W2120766348","doi":"https://doi.org/10.1186/2041-1480-5-49","title":"A use case study on late stent thrombosis for ontology-based temporal reasoning and analysis","display_name":"A use case study on late stent thrombosis for ontology-based temporal reasoning and analysis","publication_year":2014,"publication_date":"2014-12-01","ids":{"openalex":"https://openalex.org/W2120766348","doi":"https://doi.org/10.1186/2041-1480-5-49","mag":"2120766348","pmid":"https://pubmed.ncbi.nlm.nih.gov/25540680"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-5-49","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-49","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-49","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-49","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009926798","display_name":"Kim Clark","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109325","display_name":"Boston Scientific (Netherlands)","ror":"https://ror.org/021bvd011","country_code":"NL","type":"company","lineage":["https://openalex.org/I2948663404","https://openalex.org/I4210109325"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Kim Clark","raw_affiliation_strings":["Boston Scientific Corporation, Maple Grove, MN USA","Boston Scientific Corporation,"],"affiliations":[{"raw_affiliation_string":"Boston Scientific Corporation, Maple Grove, MN USA","institution_ids":[]},{"raw_affiliation_string":"Boston Scientific Corporation,","institution_ids":["https://openalex.org/I4210109325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033934593","display_name":"Deepak Kumar Sharma","orcid":"https://orcid.org/0000-0002-3181-2541"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deepak Sharma","raw_affiliation_strings":["Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN USA","Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN USA","institution_ids":[]},{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101584382","display_name":"Rui Qin","orcid":"https://orcid.org/0000-0003-2753-5972"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rui Qin","raw_affiliation_strings":["Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN USA","Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN USA","institution_ids":[]},{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060390916","display_name":"Christopher G. Chute","orcid":"https://orcid.org/0000-0001-5437-2545"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher G Chute","raw_affiliation_strings":["Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN USA","Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN USA","institution_ids":[]},{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076058129","display_name":"Cui Tao","orcid":"https://orcid.org/0000-0002-4267-1924"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cui Tao","raw_affiliation_strings":["Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN USA ; School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX USA","School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, USA","Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, MN USA ; School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, TX USA","institution_ids":[]},{"raw_affiliation_string":"School of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, USA","institution_ids":["https://openalex.org/I919571938"]},{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5009926798"],"corresponding_institution_ids":["https://openalex.org/I4210109325"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.1423,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.55246874,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"5","issue":"1","first_page":"49","last_page":"49"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12664","display_name":"Clinical practice guidelines implementation","score":0.9763000011444092,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9337000250816345,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/timeline","display_name":"Timeline","score":0.981640100479126},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7390144467353821},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7017543911933899},{"id":"https://openalex.org/keywords/narrative","display_name":"Narrative","score":0.6536381244659424},{"id":"https://openalex.org/keywords/duration","display_name":"Duration (music)","score":0.5830058455467224},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5806042551994324},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.5130059123039246},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5043627023696899},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3540964722633362},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1516338288784027},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11106786131858826}],"concepts":[{"id":"https://openalex.org/C4438859","wikidata":"https://www.wikidata.org/wiki/Q186117","display_name":"Timeline","level":2,"score":0.981640100479126},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7390144467353821},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7017543911933899},{"id":"https://openalex.org/C199033989","wikidata":"https://www.wikidata.org/wiki/Q1318295","display_name":"Narrative","level":2,"score":0.6536381244659424},{"id":"https://openalex.org/C112758219","wikidata":"https://www.wikidata.org/wiki/Q16038819","display_name":"Duration (music)","level":2,"score":0.5830058455467224},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5806042551994324},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.5130059123039246},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5043627023696899},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3540964722633362},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1516338288784027},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11106786131858826},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C124952713","wikidata":"https://www.wikidata.org/wiki/Q8242","display_name":"Literature","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/2041-1480-5-49","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-49","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-49","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:25540680","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25540680","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:europepmc.org:3241290","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4275934","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-5-49","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-49","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-49","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G660503538","display_name":null,"funder_award_id":"R01LM011829","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G7435482181","display_name":null,"funder_award_id":"R01LM011829","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120766348.pdf","grobid_xml":"https://content.openalex.org/works/W2120766348.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W20685478","https://openalex.org/W147140525","https://openalex.org/W1599319387","https://openalex.org/W1882618178","https://openalex.org/W1966920686","https://openalex.org/W1995687988","https://openalex.org/W2045286113","https://openalex.org/W2056011264","https://openalex.org/W2063813486","https://openalex.org/W2083950358","https://openalex.org/W2087641863","https://openalex.org/W2122060742","https://openalex.org/W2137429396"],"related_works":["https://openalex.org/W1858249912","https://openalex.org/W2114034199","https://openalex.org/W2317428717","https://openalex.org/W2734259032","https://openalex.org/W4385261515","https://openalex.org/W3094038556","https://openalex.org/W4296345146","https://openalex.org/W2014772881","https://openalex.org/W4254228154","https://openalex.org/W3049477255"],"abstract_inverted_index":{"In":[0],"this":[1,152],"paper,":[2],"we":[3,6],"show":[4],"how":[5,151],"have":[7],"applied":[8,178],"the":[9,48,67,76,94,104,109,132,156],"Clinical":[10],"Narrative":[11],"Temporal":[12],"Relation":[13],"Ontology":[14],"(CNTRO)":[15],"and":[16,50,55,64,74,108,131,170],"its":[17],"associated":[18],"temporal":[19,28,79,153,192],"reasoning":[20],"system":[21],"(the":[22],"CNTRO":[23,68,82,110,133,157],"Timeline":[24,69,83,111,134],"Library)":[25],"to":[26,71,162,179,188],"trend":[27],"information":[29],"within":[30,93],"medical":[31,181],"device":[32,182],"adverse":[33,45,183],"event":[34,101,184],"report":[35],"narratives.":[36,96],"238":[37,95],"narratives":[38,98,123,185],"documenting":[39],"occurrences":[40],"of":[41,78,126,150,167],"late":[42],"stent":[43],"thrombosis":[44],"events":[46,92],"from":[47,155],"Food":[49],"Drug":[51],"Administration's":[52],"(FDA)":[53],"Manufacturing":[54],"User":[56],"Facility":[57],"Device":[58],"Experience":[59],"(MAUDE)":[60],"database":[61],"were":[62],"annotated":[63],"evaluated":[65],"using":[66],"Library":[70,84,112,135],"identify,":[72],"order,":[73],"calculate":[75],"duration":[77,105,128],"events.":[80],"The":[81],"had":[85,113,136],"a":[86,127,137],"95%":[87],"accuracy":[88,116,139],"in":[89,102,117,140,186],"correctly":[90,118],"ordering":[91],"41":[97],"included":[99,124],"an":[100,114,148],"which":[103],"was":[106],"documented,":[107],"80%":[115],"determining":[119,141],"these":[120,142,173],"durations.":[121,143],"77":[122],"documentation":[125],"between":[129],"events,":[130],"76%":[138],"This":[144],"paper":[145],"also":[146],"includes":[147],"example":[149],"output":[154],"ontology":[158],"can":[159],"be":[160,177],"used":[161],"verify":[163],"recommendations":[164],"for":[165],"length":[166],"drug":[168],"administration,":[169],"proposes":[171],"that":[172],"same":[174],"tools":[175],"could":[176],"other":[180],"order":[187],"identify":[189],"currently":[190],"unknown":[191],"trends.":[193]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
