{"id":"https://openalex.org/W2155261462","doi":"https://doi.org/10.1186/2041-1480-5-46","title":"Automatically exposing OpenLifeData via SADI semantic Web Services","display_name":"Automatically exposing OpenLifeData via SADI semantic Web Services","publication_year":2014,"publication_date":"2014-11-19","ids":{"openalex":"https://openalex.org/W2155261462","doi":"https://doi.org/10.1186/2041-1480-5-46","mag":"2155261462","pmid":"https://pubmed.ncbi.nlm.nih.gov/25937881"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-5-46","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-46","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-46","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-46","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013323586","display_name":"Alejandro Rodr\u00edguez\u2010Gonz\u00e1lez","orcid":"https://orcid.org/0000-0001-8801-4762"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Alejandro Rodr\u00edguez Gonz\u00e1lez","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I4210162265","https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062800749","display_name":"Alison Callahan","orcid":"https://orcid.org/0000-0001-5163-380X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alison Callahan","raw_affiliation_strings":["Center for Biomedical Informatics Research, Stanford University, Stanford, CA USA","Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics Research, Stanford University, Stanford, CA USA","institution_ids":[]},{"raw_affiliation_string":"Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015165323","display_name":"Jos\u00e9 Cruz-Toledo","orcid":null},"institutions":[{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Cruz-Toledo","raw_affiliation_strings":["Department of Biology, Carleton University, Ottawa, ON Canada","Department of Biology, Carleton University, Ottawa, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Carleton University, Ottawa, ON Canada","institution_ids":["https://openalex.org/I67031392"]},{"raw_affiliation_string":"Department of Biology, Carleton University, Ottawa, ON, Canada","institution_ids":["https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072461552","display_name":"Adrian Garcia","orcid":"https://orcid.org/0000-0003-3891-7546"},"institutions":[{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Adrian Garcia","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I4210162265","https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090216571","display_name":"Mikel Ega\u00f1a Aranguren","orcid":"https://orcid.org/0000-0001-8081-1839"},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mikel Ega\u00f1a Aranguren","raw_affiliation_strings":["Genomic Resources Group, University of the Basque Country (UPV-EHU), Bilbao, Spain"],"affiliations":[{"raw_affiliation_string":"Genomic Resources Group, University of the Basque Country (UPV-EHU), Bilbao, Spain","institution_ids":["https://openalex.org/I169108374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044836472","display_name":"Michel Dumontier","orcid":"https://orcid.org/0000-0003-4727-9435"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michel Dumontier","raw_affiliation_strings":["Center for Biomedical Informatics Research, Stanford University, Stanford, CA USA","Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomedical Informatics Research, Stanford University, Stanford, CA USA","institution_ids":[]},{"raw_affiliation_string":"Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067974158","display_name":"Mark D. Wilkinson","orcid":"https://orcid.org/0000-0001-6960-357X"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mark D Wilkinson","raw_affiliation_strings":["Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Centro de Biotecnolog\u00eda y Gen\u00f3mica de Plantas, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I4210162265","https://openalex.org/I88060688"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5013323586"],"corresponding_institution_ids":["https://openalex.org/I4210162265","https://openalex.org/I88060688"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":14.8053,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.98715352,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"5","issue":"1","first_page":"46","last_page":"46"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10679","display_name":"Service-Oriented Architecture and Web Services","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8436416387557983},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.682251513004303},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5408037900924683},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4893569350242615},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.40097153186798096}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8436416387557983},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.682251513004303},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5408037900924683},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4893569350242615},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.40097153186798096}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/2041-1480-5-46","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-46","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-46","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:25937881","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25937881","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/d4ca2473-3ba4-454d-a424-260782219687","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/d4ca2473-3ba4-454d-a424-260782219687","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rodriguez Gonzalez, A, Callahan, A, Cruz-Toledo, J, Garcia, A, Egana Aranguren, M, Dumontier, M & Wilkinson, M D 2014, 'Automatically exposing OpenLifeData via SADI semantic Web Services', Journal of biomedical semantics, vol. 5, no. 1, 46. https://doi.org/10.1186/2041-1480-5-46","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:addi.ehu.es:10810/15822","is_oa":true,"landing_page_url":"http://hdl.handle.net/10810/15822","pdf_url":null,"source":{"id":"https://openalex.org/S4306400469","display_name":"Communities in ADDI (Universidad del Pais Vasco)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210131160","host_organization_name":"Material Physics Center","host_organization_lineage":["https://openalex.org/I4210131160"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3382281","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4417525","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-5-46","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-46","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-46","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309764","display_name":"Fundaci\u00f3n BBVA","ror":"https://ror.org/01jzs3b90"},{"id":"https://openalex.org/F4320309969","display_name":"Instituto Nacional de Investigaci\u00f3n y Tecnolog\u00eda Agraria y Alimentaria","ror":"https://ror.org/011q66e29"},{"id":"https://openalex.org/F4320322138","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02"},{"id":"https://openalex.org/F4320323113","display_name":"Banco Bilbao Vizcaya Argentaria","ror":"https://ror.org/0537dnd74"},{"id":"https://openalex.org/F4320338078","display_name":"National Bioscience Database Center","ror":"https://ror.org/00097mb19"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2155261462.pdf","grobid_xml":"https://content.openalex.org/works/W2155261462.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W103049419","https://openalex.org/W1499966647","https://openalex.org/W1515572008","https://openalex.org/W1561051808","https://openalex.org/W1561585380","https://openalex.org/W1631056296","https://openalex.org/W1823608871","https://openalex.org/W1965233570","https://openalex.org/W1971676632","https://openalex.org/W2094379143","https://openalex.org/W2097464861","https://openalex.org/W2103017472","https://openalex.org/W2124308436","https://openalex.org/W2136482257","https://openalex.org/W2151718715","https://openalex.org/W2162832420","https://openalex.org/W2165428180","https://openalex.org/W2242459625"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2333894209","https://openalex.org/W65665365","https://openalex.org/W2031517545","https://openalex.org/W4234878310","https://openalex.org/W2182204580"],"abstract_inverted_index":{"We":[0,36],"show,":[1],"through":[2],"a":[3],"variety":[4],"of":[5,10,27,32,47],"different":[6],"clients":[7,41],"and":[8],"examples":[9],"varying":[11],"complexity,":[12],"that":[13],"data":[14],"from":[15],"the":[16,28,33,45],"myriad":[17],"OpenLifeData":[18],"can":[19],"be":[20],"recovered":[21],"without":[22],"any":[23],"need":[24],"for":[25],"prior-knowledge":[26],"content":[29],"or":[30],"structure":[31],"SPARQL":[34,49],"endpoints.":[35],"also":[37],"demonstrate":[38],"that,":[39],"via":[40],"such":[42],"as":[43],"SHARE,":[44],"complexity":[46],"federated":[48],"queries":[50],"is":[51],"dramatically":[52],"reduced.":[53]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2016-06-24T00:00:00"}
