{"id":"https://openalex.org/W2170811288","doi":"https://doi.org/10.1186/2041-1480-5-43","title":"TypOn: the microbial typing ontology","display_name":"TypOn: the microbial typing ontology","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2170811288","doi":"https://doi.org/10.1186/2041-1480-5-43","mag":"2170811288","pmid":"https://pubmed.ncbi.nlm.nih.gov/25584183"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-5-43","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-43","pdf_url":"https://link.springer.com/content/pdf/10.1186/2041-1480-5-43.pdf","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/2041-1480-5-43.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041077284","display_name":"C\u00e1tia Vaz","orcid":"https://orcid.org/0000-0001-6074-3074"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I203847022","display_name":"Instituto Polit\u00e9cnico de Lisboa","ror":"https://ror.org/04ea70f07","country_code":"PT","type":"education","lineage":["https://openalex.org/I203847022"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"C\u00e1tia Vaz","raw_affiliation_strings":["INESC-ID, R. Alves Redol 9, 1000-029 Lisboa, Portugal ; Instituto Superior de Engenharia de Lisboa, Instituto Polit\u00e9cnico de Lisboa, R. Cons. Em\u00eddio Navarro 1, 1959-007 Lisboa, Portugal","INESC-ID, R. Alves Redol 9, 1000-029, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, R. Alves Redol 9, 1000-029 Lisboa, Portugal ; Instituto Superior de Engenharia de Lisboa, Instituto Polit\u00e9cnico de Lisboa, R. Cons. Em\u00eddio Navarro 1, 1959-007 Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201","https://openalex.org/I203847022"]},{"raw_affiliation_string":"INESC-ID, R. Alves Redol 9, 1000-029, Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110540557","display_name":"Alexandre P. Francisco","orcid":"https://orcid.org/0000-0003-4852-1641"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Alexandre P Francisco","raw_affiliation_strings":["INESC-ID, R. Alves Redol 9, 1000-029 Lisboa, Portugal ; Instituto Superior T\u00e9cnico, Universidade de Lisboa, Av. Rovisco Pais 1, 1049-001 Lisboa, Portugal","INESC-ID, R. Alves Redol 9, 1000-029, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, R. Alves Redol 9, 1000-029 Lisboa, Portugal ; Instituto Superior T\u00e9cnico, Universidade de Lisboa, Av. Rovisco Pais 1, 1049-001 Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"INESC-ID, R. Alves Redol 9, 1000-029, Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028381952","display_name":"Mickael Santos Da Silva","orcid":"https://orcid.org/0000-0002-9348-0482"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Mickael Silva","raw_affiliation_strings":["Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028 Lisboa, Portugal","Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028 Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043485383","display_name":"Keith A. Jolley","orcid":"https://orcid.org/0000-0002-0751-0287"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Keith A Jolley","raw_affiliation_strings":["Department of Zoology, University of Oxford, Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Zoology, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064855716","display_name":"James E. Bray","orcid":"https://orcid.org/0000-0003-3554-4254"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James E Bray","raw_affiliation_strings":["Department of Zoology, University of Oxford, Oxford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Zoology, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080259760","display_name":"Hannes Pouseele","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092488","display_name":"Custodix (Belgium)","ror":"https://ror.org/00m6eb133","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210092488"]},{"id":"https://openalex.org/I4210131439","display_name":"Applied Mathematics (United States)","ror":"https://ror.org/03seew607","country_code":"US","type":"company","lineage":["https://openalex.org/I4210131439"]}],"countries":["BE","US"],"is_corresponding":false,"raw_author_name":"Hannes Pouseele","raw_affiliation_strings":["Applied Maths NV, Keistraat 120, 98308 Sint-Martens-Latem, Belgium","Applied Maths NV, Keistraat 120, 98308, Sint-Martens-Latem, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Applied Maths NV, Keistraat 120, 98308 Sint-Martens-Latem, Belgium","institution_ids":["https://openalex.org/I4210092488"]},{"raw_affiliation_string":"Applied Maths NV, Keistraat 120, 98308, Sint-Martens-Latem, Belgium","institution_ids":["https://openalex.org/I4210131439"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047021325","display_name":"Joerg Rothganger","orcid":null},"institutions":[{"id":"https://openalex.org/I4210120090","display_name":"Institut f\u00fcr Chemo- und Biosensorik","ror":"https://ror.org/029drer02","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210120090"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Joerg Rothganger","raw_affiliation_strings":["Ridom GmbH, Mendelstr. 11, D-48149 M\u00fcnster, Germany","Ridom GmbH, Mendelstr. 11, D-48149, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ridom GmbH, Mendelstr. 11, D-48149 M\u00fcnster, Germany","institution_ids":["https://openalex.org/I4210120090"]},{"raw_affiliation_string":"Ridom GmbH, Mendelstr. 11, D-48149, M\u00fcnster, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082344930","display_name":"M\u00e1rio Ramirez","orcid":"https://orcid.org/0000-0002-4084-6233"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"M\u00e1rio Ramirez","raw_affiliation_strings":["Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028 Lisboa, Portugal","Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028 Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057086640","display_name":"Jo\u00e3o Andr\u00e9 Carri\u00e7o","orcid":"https://orcid.org/0000-0002-5274-2722"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jo\u00e3o A Carri\u00e7o","raw_affiliation_strings":["Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028 Lisboa, Portugal","Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028 Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"Instituto de Microbiologia, Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Av. Prof. Egas Moniz, 1649-028, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5041077284"],"corresponding_institution_ids":["https://openalex.org/I121345201","https://openalex.org/I203847022"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":0.5437,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.67120399,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"5","issue":"1","first_page":"43","last_page":"43"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/typing","display_name":"Typing","score":0.6517792344093323},{"id":"https://openalex.org/keywords/multilocus-sequence-typing","display_name":"Multilocus sequence typing","score":0.5665898323059082},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5649436712265015},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5292902588844299},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5266135931015015},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4308820068836212},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38124769926071167},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34924983978271484},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30877289175987244},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24302908778190613},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.08643603324890137},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.0858907699584961},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07303482294082642}],"concepts":[{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.6517792344093323},{"id":"https://openalex.org/C77434933","wikidata":"https://www.wikidata.org/wiki/Q4043440","display_name":"Multilocus sequence typing","level":4,"score":0.5665898323059082},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5649436712265015},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5292902588844299},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5266135931015015},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4308820068836212},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38124769926071167},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34924983978271484},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30877289175987244},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24302908778190613},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.08643603324890137},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0858907699584961},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07303482294082642},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C28490314","wikidata":"https://www.wikidata.org/wiki/Q189436","display_name":"Speech recognition","level":1,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1186/2041-1480-5-43","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-43","pdf_url":"https://link.springer.com/content/pdf/10.1186/2041-1480-5-43.pdf","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:25584183","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25584183","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:repositorio.ipl.pt:10400.21/8713","is_oa":true,"landing_page_url":"http://hdl.handle.net/10400.21/8713","pdf_url":null,"source":{"id":"https://openalex.org/S4306400762","display_name":"Reposit\u00f3rio Cient\u00edfico do Instituto Polit\u00e9cnico de Lisboa (Instituto Polit\u00e9cnico de Lisboa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I203847022","host_organization_name":"Instituto Polit\u00e9cnico de Lisboa","host_organization_lineage":["https://openalex.org/I203847022"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:repositorio.ipl.pt:10400.21/8717","is_oa":false,"landing_page_url":"http://hdl.handle.net/10400.21/8717","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_2df8fbb1"},{"id":"pmh:oai:pubmedcentral.nih.gov:4290098","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4290098","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:repositorio.ipl.pt:10400.21/9000","is_oa":true,"landing_page_url":"http://hdl.handle.net/10400.21/9000","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:repositorio.ul.pt:10451/51347","is_oa":true,"landing_page_url":"http://hdl.handle.net/10451/51347","pdf_url":null,"source":{"id":"https://openalex.org/S4306401074","display_name":"Reposit\u00f3rio da Universidade de Lisboa (University of Lisbon)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I141596103","host_organization_name":"University of Lisbon","host_organization_lineage":["https://openalex.org/I141596103"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-5-43","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-43","pdf_url":"https://link.springer.com/content/pdf/10.1186/2041-1480-5-43.pdf","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4441385668","display_name":"Tratamento de Dados em Larga-escala em Ambientes Nuvem","funder_award_id":"EXCL/EEI-ESS/0257/2012","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G8621906876","display_name":null,"funder_award_id":"PEst-OE/EEI/LA0021/2013","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2170811288.pdf","grobid_xml":"https://content.openalex.org/works/W2170811288.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W139644854","https://openalex.org/W141675256","https://openalex.org/W271676917","https://openalex.org/W1980030331","https://openalex.org/W1998010233","https://openalex.org/W2003960936","https://openalex.org/W2018406369","https://openalex.org/W2026413648","https://openalex.org/W2032142842","https://openalex.org/W2037409969","https://openalex.org/W2053940732","https://openalex.org/W2057910559","https://openalex.org/W2062558911","https://openalex.org/W2097877306","https://openalex.org/W2107802728","https://openalex.org/W2111576850","https://openalex.org/W2121861720","https://openalex.org/W2123171788","https://openalex.org/W2123990722","https://openalex.org/W2142503351","https://openalex.org/W2144979499","https://openalex.org/W2148206504","https://openalex.org/W2149378423","https://openalex.org/W2153225416","https://openalex.org/W2155376333","https://openalex.org/W2168482920","https://openalex.org/W2750987793"],"related_works":["https://openalex.org/W2941777425","https://openalex.org/W2771955576","https://openalex.org/W2023410356","https://openalex.org/W1984563346","https://openalex.org/W4210384666","https://openalex.org/W1967917710","https://openalex.org/W2002948709","https://openalex.org/W2110199419","https://openalex.org/W3184364899","https://openalex.org/W4309720653"],"abstract_inverted_index":{"ABSTRACT:":[0],"Bacterial":[1],"identification":[2],"and":[3,23,31,36,43,74,97,139,157],"characterization":[4],"at":[5,83],"subspecies":[6],"level":[7,86],"is":[8,148],"commonly":[9],"known":[10],"as":[11],"Microbial":[12],"Typing.":[13],"Currently,":[14],"these":[15,53],"methodologies":[16,135],"are":[17,87],"fundamental":[18,150],"tools":[19],"in":[20,49,137],"Clinical":[21],"Microbiology":[22],"bacterial":[24],"population":[25],"genetics":[26],"studies":[27],"to":[28,32,47,57,65,77,152],"track":[29],"outbreaks":[30],"study":[33],"the":[34,71,75,81,92,104,122,132],"dissemination":[35],"evolution":[37],"of":[38,70,95,107,128,131],"virulence":[39],"or":[40],"pathogenicity":[41],"factors":[42],"antimicrobial":[44],"resistance.":[45],"Due":[46],"advances":[48],"DNA":[50],"sequencing":[51],"technology,":[52],"methods":[54],"have":[55,66],"evolved":[56],"become":[58],"focused":[59],"on":[60,164],"sequence-based":[61,99,123,133],"methodologies.":[62],"The":[63],"need":[64],"a":[67,84,149],"common":[68],"understanding":[69],"concepts":[72],"described":[73],"ability":[76],"share":[78],"results":[79],"within":[80],"community":[82],"global":[85],"increasingly":[88],"important":[89],"requisites":[90],"for":[91,121,160],"continued":[93],"development":[94],"portable":[96],"accurate":[98],"typing":[100,125,134,162,167],"methods,":[101],"especially":[102],"with":[103],"recent":[105],"introduction":[106],"Next":[108],"Generation":[109],"Sequencing":[110],"(NGS)":[111],"technologies.":[112],"In":[113],"this":[114],"paper,":[115],"we":[116],"present":[117],"an":[118],"ontology":[119],"designed":[120],"microbial":[124,161],"field,":[126],"capable":[127],"describing":[129],"any":[130],"currently":[136],"use":[138],"being":[140],"developed,":[141],"including":[142],"novel":[143],"NGS":[144],"based":[145,163,166],"methods.":[146,168],"This":[147],"step":[151],"accurately":[153],"describe,":[154],"analyze,":[155],"curate,":[156],"manage":[158],"information":[159],"sequence":[165]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
