{"id":"https://openalex.org/W2168605009","doi":"https://doi.org/10.1186/2041-1480-5-41","title":"Structuring research methods and data with the research object model: genomics workflows as a case study","display_name":"Structuring research methods and data with the research object model: genomics workflows as a case study","publication_year":2014,"publication_date":"2014-09-18","ids":{"openalex":"https://openalex.org/W2168605009","doi":"https://doi.org/10.1186/2041-1480-5-41","mag":"2168605009","pmid":"https://pubmed.ncbi.nlm.nih.gov/25276335"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-5-41","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-41","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-41","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-41","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029869005","display_name":"Kristina Hettne","orcid":"https://orcid.org/0000-0002-4182-7560"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Kristina M Hettne","raw_affiliation_strings":["Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035764079","display_name":"Harish Dharuri","orcid":null},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Harish Dharuri","raw_affiliation_strings":["Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100744623","display_name":"Jun Zhao","orcid":"https://orcid.org/0000-0001-6935-9028"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jun Zhao","raw_affiliation_strings":["Department of Zoology, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Department of Zoology, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087859284","display_name":"Katherine Wolstencroft","orcid":"https://orcid.org/0000-0002-1279-5133"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Katherine Wolstencroft","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK ; Leiden Institute of Advanced Computer Science, Leiden University, Leiden, The Netherlands","School of Computer Science, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK ; Leiden Institute of Advanced Computer Science, Leiden University, Leiden, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035816930","display_name":"Khalid Belhajjame","orcid":"https://orcid.org/0000-0001-6938-0820"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Khalid Belhajjame","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029941394","display_name":"Stian Soiland\u2010Reyes","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stian Soiland-Reyes","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072768984","display_name":"Eleni Mina","orcid":"https://orcid.org/0000-0002-8972-9206"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Eleni Mina","raw_affiliation_strings":["Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039828193","display_name":"Mark Thompson","orcid":"https://orcid.org/0000-0002-7633-1442"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Mark Thompson","raw_affiliation_strings":["Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080560495","display_name":"Don Cruickshank","orcid":"https://orcid.org/0000-0002-0777-0855"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Don Cruickshank","raw_affiliation_strings":["Department of Zoology, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Department of Zoology, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041257950","display_name":"L. Verdes\u2010Montenegro","orcid":"https://orcid.org/0000-0003-0156-6180"},"institutions":[{"id":"https://openalex.org/I4210159146","display_name":"Instituto de Astrof\u00edsica de Andaluc\u00eda","ror":"https://ror.org/04ka0vh05","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210159146"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Lourdes Verdes-Montenegro","raw_affiliation_strings":["Instituto de Astrof\u00edsica de Andaluc\u00eda, Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Instituto de Astrof\u00edsica de Andaluc\u00eda, Granada, Spain","institution_ids":["https://openalex.org/I4210159146"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064882403","display_name":"Juli\u00e1n Garrido","orcid":"https://orcid.org/0000-0002-6696-4772"},"institutions":[{"id":"https://openalex.org/I4210159146","display_name":"Instituto de Astrof\u00edsica de Andaluc\u00eda","ror":"https://ror.org/04ka0vh05","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210159146"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Julian Garrido","raw_affiliation_strings":["Instituto de Astrof\u00edsica de Andaluc\u00eda, Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Instituto de Astrof\u00edsica de Andaluc\u00eda, Granada, Spain","institution_ids":["https://openalex.org/I4210159146"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059614463","display_name":"David De Roure","orcid":"https://orcid.org/0000-0001-9074-3016"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David de Roure","raw_affiliation_strings":["Department of Zoology, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Department of Zoology, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082377531","display_name":"\u00d3scar Corcho","orcid":"https://orcid.org/0000-0002-9260-0753"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Oscar Corcho","raw_affiliation_strings":["Ontology Engineering Group, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Ontology Engineering Group, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028996799","display_name":"Graham Klyne","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Graham Klyne","raw_affiliation_strings":["Department of Zoology, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Department of Zoology, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048076262","display_name":"Reinout van Schouwen","orcid":null},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Reinout van Schouwen","raw_affiliation_strings":["Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021033668","display_name":"Peter A.C. \u2019t Hoen","orcid":"https://orcid.org/0000-0003-4450-3112"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Peter A C \u2018t Hoen","raw_affiliation_strings":["Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047066677","display_name":"Sean Bechhofer","orcid":"https://orcid.org/0000-0002-5872-3573"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sean Bechhofer","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027899893","display_name":"Carole Goble","orcid":"https://orcid.org/0000-0003-1219-2137"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Carole Goble","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010916667","display_name":"Marco Roos","orcid":"https://orcid.org/0000-0003-1596-5908"},"institutions":[{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marco Roos","raw_affiliation_strings":["Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":19,"corresponding_author_ids":["https://openalex.org/A5029869005"],"corresponding_institution_ids":["https://openalex.org/I2800006345"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":13.9844,"has_fulltext":true,"cited_by_count":29,"citation_normalized_percentile":{"value":0.98615264,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"5","issue":"1","first_page":"41","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.9147642254829407},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8430970907211304},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6000116467475891},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5811252593994141},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.45258626341819763},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4334532916545868},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4325951635837555},{"id":"https://openalex.org/keywords/object","display_name":"Object (grammar)","score":0.4226984977722168},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38761019706726074},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3206482529640198},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2278766632080078},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1637391746044159},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.114411860704422}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.9147642254829407},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8430970907211304},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6000116467475891},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5811252593994141},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.45258626341819763},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4334532916545868},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4325951635837555},{"id":"https://openalex.org/C2781238097","wikidata":"https://www.wikidata.org/wiki/Q175026","display_name":"Object (grammar)","level":2,"score":0.4226984977722168},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38761019706726074},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3206482529640198},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2278766632080078},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1637391746044159},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.114411860704422},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[],"locations_count":13,"locations":[{"id":"doi:10.1186/2041-1480-5-41","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-41","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-41","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:25276335","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25276335","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4177597","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4177597","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:eprints.lancs.ac.uk:70207","is_oa":true,"landing_page_url":null,"pdf_url":"https://eprints.lancs.ac.uk/id/eprint/70207/1/2041_1480_5_41.pdf","source":{"id":"https://openalex.org/S4306401916","display_name":"Lancaster EPrints (Lancaster University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67415387","host_organization_name":"Lancaster University","host_organization_lineage":["https://openalex.org/I67415387"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:oa.upm.es:35877","is_oa":false,"landing_page_url":"https://oa.upm.es/35877/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402421","display_name":"Archivo Digital UPM (Universidad Polit\u00e9cnica de Madrid)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I88060688","host_organization_name":"Universidad Polit\u00e9cnica de Madrid","host_organization_lineage":["https://openalex.org/I88060688"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, ISSN 2041-1480, 2014, Vol. 5, No. 41","raw_type":"info:eu-repo/semantics/acceptedVersion"},{"id":"pmh:oai:arXiv.org:1311.2789","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1311.2789","pdf_url":"https://arxiv.org/pdf/1311.2789","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pure.atira.dk:openaire/6a2f3f49-e226-4c2c-aaa4-9325a85f2a39","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/6a2f3f49-e226-4c2c-aaa4-9325a85f2a39","pdf_url":"https://pure.manchester.ac.uk/ws/files/30299581/POST-PEER-REVIEW-NON-PUBLISHERS.PDF","source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hettne, K, Dharuri, H, Zhao, J, Wolstencroft, K, Belhajjame, K, Soiland-Reyes, S, Mina, E, Thompson, M, Cruickshank, D, Verdes-Montenegro, L, Garrido, J, de Roure, D, Corcho, O, Klyne, G, van Schouwen, R, 't Hoen, P A C, Bechhofer, S, Goble, C & Roos, M 2014, 'Structuring research methods and data with the research object model: genomics workflows as a case study', Journal of Biomedical Semantics, vol. 5, no. 1. https://doi.org/10.1186/2041-1480-5-41","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:lumc:oai:openaccess.leidenuniv.nl:1887/104746","is_oa":false,"landing_page_url":"http://hdl.handle.net/1887/104746","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"VOLUME=5;TITLE=None","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dnet:archivodigit::f7e1e6bf5d11c4218b9773e239f170df","is_oa":true,"landing_page_url":"http://oa.upm.es/35877/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, ISSN 2041-1480, 2014, Vol. 5, No. 41","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:openaccess.leidenuniv.nl:1887/79949","is_oa":false,"landing_page_url":"http://hdl.handle.net/1887/79949","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://jbiomedsem.biomedcentral.com/articles/10.1186/2041-1480-5-41","raw_type":"Article / Letter to editor"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:302d6922-4baf-4448-9ba1-641cb5d3e469","is_oa":true,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:302d6922-4baf-4448-9ba1-641cb5d3e469","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal article"},{"id":"pmh:oai:scholarlypublications.universiteitleiden.nl:item_2993018","is_oa":false,"landing_page_url":"https://hdl.handle.net/1887/104746","pdf_url":null,"source":{"id":"https://openalex.org/S4306400850","display_name":"Leiden Repository (Leiden University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121797337","host_organization_name":"Leiden University","host_organization_lineage":["https://openalex.org/I121797337"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"Article / Letter to editor"},{"id":"pmh:ul:oai:scholarlypublications.universiteitleiden.nl:item_2973598","is_oa":true,"landing_page_url":"https://jbiomedsem.biomedcentral.com/articles/10.1186/2041-1480-5-41","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal Biomedical Semantics, 5, 41. BIOMED CENTRAL LTD","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-5-41","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-41","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-41","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4349673913","display_name":null,"funder_award_id":"EP/G026238/","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G4660795319","display_name":null,"funder_award_id":"EP/G026238/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5596758552","display_name":"myGrid: A Platform for e-Biology Renewal","funder_award_id":"EP/G026238/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6720185052","display_name":null,"funder_award_id":"EP/G026238","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8452545418","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320328786","display_name":"Norwegian Biodiversity Information Centre","ror":"https://ror.org/04jnzhb65"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168605009.pdf","grobid_xml":"https://content.openalex.org/works/W2168605009.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W9189269","https://openalex.org/W162978907","https://openalex.org/W1540414121","https://openalex.org/W1546703885","https://openalex.org/W1978215768","https://openalex.org/W1980783875","https://openalex.org/W1990640035","https://openalex.org/W1991079391","https://openalex.org/W1995054497","https://openalex.org/W1998767819","https://openalex.org/W2000729083","https://openalex.org/W2006141598","https://openalex.org/W2008985174","https://openalex.org/W2013434113","https://openalex.org/W2041467022","https://openalex.org/W2050355460","https://openalex.org/W2050554833","https://openalex.org/W2051911821","https://openalex.org/W2069028640","https://openalex.org/W2069623144","https://openalex.org/W2076327529","https://openalex.org/W2084292968","https://openalex.org/W2086112825","https://openalex.org/W2098405885","https://openalex.org/W2098896780","https://openalex.org/W2103017472","https://openalex.org/W2105347056","https://openalex.org/W2111639664","https://openalex.org/W2112723752","https://openalex.org/W2114702301","https://openalex.org/W2116238734","https://openalex.org/W2121907019","https://openalex.org/W2125475999","https://openalex.org/W2128105693","https://openalex.org/W2129301079","https://openalex.org/W2129427950","https://openalex.org/W2130430745","https://openalex.org/W2136482257","https://openalex.org/W2137334466","https://openalex.org/W2138598227","https://openalex.org/W2140157849","https://openalex.org/W2141541659","https://openalex.org/W2149378423","https://openalex.org/W2150424267","https://openalex.org/W2151680116","https://openalex.org/W2153921000","https://openalex.org/W2159721641","https://openalex.org/W2162832420","https://openalex.org/W2164339823","https://openalex.org/W2166711199","https://openalex.org/W2171475421","https://openalex.org/W2282162911","https://openalex.org/W2397044573","https://openalex.org/W2397358255","https://openalex.org/W2405687053","https://openalex.org/W2586887466","https://openalex.org/W2998054620","https://openalex.org/W3103908354","https://openalex.org/W4237175910","https://openalex.org/W4242628708"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2251519152"],"abstract_inverted_index":{"The":[0,7],"Research":[1,9],"Object":[2,10],"is":[3,12],"available":[4,13],"at":[5,14],"http://www.myexperiment.org/packs/428":[6],"Wf4Ever":[8],"Model":[11],"http://wf4ever.github.io/ro.":[15]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2020-11-23T00:00:00"}