{"id":"https://openalex.org/W2107712133","doi":"https://doi.org/10.1186/2041-1480-5-4","title":"The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources","display_name":"The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2107712133","doi":"https://doi.org/10.1186/2041-1480-5-4","mag":"2107712133","pmid":"https://pubmed.ncbi.nlm.nih.gov/24438387"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-5-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-4","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034898355","display_name":"C\u00e1tia Pesquita","orcid":"https://orcid.org/0000-0002-1847-9393"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Catia Pesquita","raw_affiliation_strings":["LASIGE, Campo Grande, Lisboa, Portugal. cpesquita@di.fc.ul.pt","LASIGE, Campo Grande, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LASIGE, Campo Grande, Lisboa, Portugal. cpesquita@di.fc.ul.pt","institution_ids":[]},{"raw_affiliation_string":"LASIGE, Campo Grande, Lisboa, Portugal","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114374455","display_name":"Jo\u00e3o D. Ferreira","orcid":"https://orcid.org/0000-0002-6900-3168"},"institutions":[{"id":"https://openalex.org/I4210105462","display_name":"Lus\u00edada University of Lisbon","ror":"https://ror.org/00zjprf31","country_code":"PT","type":"education","lineage":["https://openalex.org/I4210105462","https://openalex.org/I4401200244"]},{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jo\u00e3o D Ferreira","raw_affiliation_strings":["LASIGE, Campo Grande, Lisboa, Portugal","Universidade de Lisboa, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LASIGE, Campo Grande, Lisboa, Portugal","institution_ids":[]},{"raw_affiliation_string":"Universidade de Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I4210105462","https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014333753","display_name":"Francisco M. Couto","orcid":"https://orcid.org/0000-0003-0627-1496"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210105462","display_name":"Lus\u00edada University of Lisbon","ror":"https://ror.org/00zjprf31","country_code":"PT","type":"education","lineage":["https://openalex.org/I4210105462","https://openalex.org/I4401200244"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Francisco M Couto","raw_affiliation_strings":["LASIGE, Campo Grande, Lisboa, Portugal","Universidade de Lisboa, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LASIGE, Campo Grande, Lisboa, Portugal","institution_ids":[]},{"raw_affiliation_string":"Universidade de Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I4210105462","https://openalex.org/I141596103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043057704","display_name":"M\u00e1rio J. Silva","orcid":"https://orcid.org/0000-0002-5452-6185"},"institutions":[{"id":"https://openalex.org/I121345201","display_name":"Instituto de Engenharia de Sistemas e Computadores Investiga\u00e7\u00e3o e Desenvolvimento","ror":"https://ror.org/04mqy3p58","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I121345201","https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4210105462","display_name":"Lus\u00edada University of Lisbon","ror":"https://ror.org/00zjprf31","country_code":"PT","type":"education","lineage":["https://openalex.org/I4210105462","https://openalex.org/I4401200244"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"M\u00e1rio J Silva","raw_affiliation_strings":["INESC-ID, Av. Alves Redol, Lisboa, Portugal","Universidade de Lisboa, Lisboa, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INESC-ID, Av. Alves Redol, Lisboa, Portugal","institution_ids":["https://openalex.org/I121345201"]},{"raw_affiliation_string":"Universidade de Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I4210105462","https://openalex.org/I141596103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5034898355"],"corresponding_institution_ids":[],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":1.9919,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.86504465,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"5","issue":"1","first_page":"4","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5507000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5507000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14043","display_name":"Historical and modern epidemiology studies","score":0.061799999326467514,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.052299998700618744,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.726259708404541},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.684417724609375},{"id":"https://openalex.org/keywords/epidemiology","display_name":"Epidemiology","score":0.6615008115768433},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5970265865325928},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5764632821083069},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.4736522436141968},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4700889587402344},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3986325263977051},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3936599791049957},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.35272371768951416},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.3410595655441284},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2831020951271057},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.2183135449886322},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10673722624778748},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10352304577827454},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09192368388175964}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.726259708404541},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.684417724609375},{"id":"https://openalex.org/C107130276","wikidata":"https://www.wikidata.org/wiki/Q133805","display_name":"Epidemiology","level":2,"score":0.6615008115768433},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5970265865325928},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5764632821083069},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.4736522436141968},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4700889587402344},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3986325263977051},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3936599791049957},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.35272371768951416},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.3410595655441284},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2831020951271057},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.2183135449886322},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10673722624778748},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10352304577827454},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09192368388175964},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/2041-1480-5-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-4","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:24438387","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24438387","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:europepmc.org:2908682","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3926306","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-5-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-4","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6100000143051147}],"awards":[{"id":"https://openalex.org/G7967794104","display_name":null,"funder_award_id":"231807","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2107712133.pdf","grobid_xml":"https://content.openalex.org/works/W2107712133.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W57993918","https://openalex.org/W90362830","https://openalex.org/W102787101","https://openalex.org/W1501546233","https://openalex.org/W1599380816","https://openalex.org/W1965045549","https://openalex.org/W1967841763","https://openalex.org/W1969538518","https://openalex.org/W1992997426","https://openalex.org/W2006636719","https://openalex.org/W2033237963","https://openalex.org/W2033377040","https://openalex.org/W2033842755","https://openalex.org/W2083475779","https://openalex.org/W2087779040","https://openalex.org/W2103235794","https://openalex.org/W2103260426","https://openalex.org/W2113142309","https://openalex.org/W2123152121","https://openalex.org/W2126393394","https://openalex.org/W2136410628","https://openalex.org/W2140080033","https://openalex.org/W2142675451","https://openalex.org/W2152901032","https://openalex.org/W2156039063","https://openalex.org/W2159092541","https://openalex.org/W2178026535","https://openalex.org/W2395573987","https://openalex.org/W2404369708","https://openalex.org/W2406556598","https://openalex.org/W2479523499","https://openalex.org/W2977393556","https://openalex.org/W3092478103","https://openalex.org/W4250152831"],"related_works":["https://openalex.org/W1506177826","https://openalex.org/W2726617685","https://openalex.org/W2127299687","https://openalex.org/W2111194626","https://openalex.org/W1794266373","https://openalex.org/W1562796463","https://openalex.org/W2399880385","https://openalex.org/W2397553363","https://openalex.org/W2074013882","https://openalex.org/W4206428734"],"abstract_inverted_index":{"BACKGROUND:":[0],"Epidemiology":[1,67],"is":[2,31,136,160,165],"a":[3,32,51,80,185],"data-intensive":[4],"and":[5,12,22,70,96,115,126,135,146,154,164,196],"multi-disciplinary":[6],"subject,":[7],"where":[8],"data":[9,147,194],"integration,":[10,148],"curation":[11],"sharing":[13,85],"are":[14],"becoming":[15],"increasingly":[16],"relevant,":[17],"given":[18],"its":[19,73],"global":[20,189],"context":[21],"time":[23],"constraints.":[24],"The":[25,89,107],"semantic":[26,54,81,141],"annotation":[27,142,174],"of":[28,44,47,53,110,122,143,175,188],"epidemiology":[29,86,114,144,176],"resources":[30,55,145,177],"cornerstone":[33],"to":[34,138,183],"effectively":[35],"support":[36,139],"such":[37],"activities.":[38,157],"Although":[39],"several":[40,113],"ontologies":[41,78],"cover":[42],"some":[43],"the":[45,66,92,98,140,173],"subdomains":[46],"epidemiology,":[48],"we":[49],"identified":[50],"lack":[52],"for":[56,84],"epidemiology-specific":[57],"terms.":[58],"This":[59],"paper":[60],"addresses":[61],"this":[62],"need":[63],"by":[64,71,192],"proposing":[65],"Ontology":[68,101],"(EPO)":[69],"describing":[72],"integration":[74,195],"with":[75,178],"other":[76],"related":[77,127],"into":[79],"enabled":[82],"platform":[83],"resources.":[87],"RESULTS:":[88],"EPO":[90,111,159,179],"follows":[91],"OBO":[93],"Foundry":[94],"guidelines":[95],"uses":[97],"Basic":[99],"Formal":[100],"(BFO)":[102],"as":[103,118,120,149,151],"an":[104],"upper":[105],"ontology.":[106],"first":[108],"version":[109],"models":[112],"demography":[116],"parameters":[117],"well":[119,150],"transmission":[121],"infection":[123],"processes,":[124],"participants":[125],"procedures.":[128],"It":[129],"currently":[130],"has":[131],"nearly":[132],"200":[133],"classes":[134],"designed":[137],"information":[152],"retrieval":[153],"knowledge":[155],"discovery":[156],"CONCLUSIONS:":[158],"under":[161],"active":[162],"development":[163],"freely":[166],"available":[167],"at":[168],"https://code.google.com/p/epidemiology-ontology/.":[169],"We":[170],"believe":[171],"that":[172],"will":[180],"help":[181],"researchers":[182],"gain":[184],"better":[186],"understanding":[187],"epidemiological":[190],"events":[191],"enhancing":[193],"sharing.":[197]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
