{"id":"https://openalex.org/W2165720102","doi":"https://doi.org/10.1186/2041-1480-5-39","title":"The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology","display_name":"The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology","publication_year":2014,"publication_date":"2014-09-08","ids":{"openalex":"https://openalex.org/W2165720102","doi":"https://doi.org/10.1186/2041-1480-5-39","mag":"2165720102","pmid":"https://pubmed.ncbi.nlm.nih.gov/25276334"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-5-39","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-39","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-39","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-39","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040670058","display_name":"Robert Thacker","orcid":"https://orcid.org/0000-0002-9654-0073"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert W Thacker","raw_affiliation_strings":["Department of Biology, University of Alabama at Birmingham, Birmingham, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Alabama at Birmingham, Birmingham, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058681809","display_name":"Maria Cristina D\u00edaz","orcid":"https://orcid.org/0000-0001-9485-0011"},"institutions":[{"id":"https://openalex.org/I4210110667","display_name":"Universidad de Margarita","ror":"https://ror.org/01vd34q60","country_code":"VE","type":"education","lineage":["https://openalex.org/I4210110667"]}],"countries":["VE"],"is_corresponding":false,"raw_author_name":"Maria Cristina D\u00edaz","raw_affiliation_strings":["Museo Margarita, Boca de Rio, 6304 Venezuela","Museo Margarita, Boca de Rio, 6304, Venezuela"],"affiliations":[{"raw_affiliation_string":"Museo Margarita, Boca de Rio, 6304 Venezuela","institution_ids":["https://openalex.org/I4210110667"]},{"raw_affiliation_string":"Museo Margarita, Boca de Rio, 6304, Venezuela","institution_ids":["https://openalex.org/I4210110667"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032407513","display_name":"Adeline Kerner","orcid":"https://orcid.org/0000-0002-0101-8662"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4387155127","display_name":"Centre de recherche en pal\u00e9ontologie - Paris","ror":"https://ror.org/05ax2x637","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4387155127"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Adeline Kerner","raw_affiliation_strings":["CR2P, UMR 7207 CNRS-MNHN-UPMC, D\u00e9partement Histoire de la Terre, Mus\u00e9um National d'Histoire Naturelle, B\u00e2timent de G\u00e9ologie, CP48, 57 rue Cuvier, 75005 Paris, France","CR2P, UMR 7207 CNRS-MNHN-UPMC, D\u00e9partement Histoire de la Terre, Mus\u00e9um National d'Histoire Naturelle, B\u00e2timent de G\u00e9ologie, CP48, 57 rue Cuvier, 75005, Paris, France"],"affiliations":[{"raw_affiliation_string":"CR2P, UMR 7207 CNRS-MNHN-UPMC, D\u00e9partement Histoire de la Terre, Mus\u00e9um National d'Histoire Naturelle, B\u00e2timent de G\u00e9ologie, CP48, 57 rue Cuvier, 75005 Paris, France","institution_ids":["https://openalex.org/I4387155127","https://openalex.org/I4210123595","https://openalex.org/I1294671590","https://openalex.org/I39804081"]},{"raw_affiliation_string":"CR2P, UMR 7207 CNRS-MNHN-UPMC, D\u00e9partement Histoire de la Terre, Mus\u00e9um National d'Histoire Naturelle, B\u00e2timent de G\u00e9ologie, CP48, 57 rue Cuvier, 75005, Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I1294671590","https://openalex.org/I4387155127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088633838","display_name":"R\u00e9gine Vignes\u2010Lebbe","orcid":"https://orcid.org/0000-0002-6912-6248"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4387155127","display_name":"Centre de recherche en pal\u00e9ontologie - Paris","ror":"https://ror.org/05ax2x637","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4387155127"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"R\u00e9gine Vignes-Lebbe","raw_affiliation_strings":["CR2P, UMR 7207 CNRS-MNHN-UPMC, D\u00e9partement Histoire de la Terre, Mus\u00e9um National d'Histoire Naturelle, B\u00e2timent de G\u00e9ologie, CP48, 57 rue Cuvier, 75005 Paris, France","CR2P, UMR 7207 CNRS-MNHN-UPMC, D\u00e9partement Histoire de la Terre, Mus\u00e9um National d'Histoire Naturelle, B\u00e2timent de G\u00e9ologie, CP48, 57 rue Cuvier, 75005, Paris, France"],"affiliations":[{"raw_affiliation_string":"CR2P, UMR 7207 CNRS-MNHN-UPMC, D\u00e9partement Histoire de la Terre, Mus\u00e9um National d'Histoire Naturelle, B\u00e2timent de G\u00e9ologie, CP48, 57 rue Cuvier, 75005 Paris, France","institution_ids":["https://openalex.org/I4387155127","https://openalex.org/I4210123595","https://openalex.org/I1294671590","https://openalex.org/I39804081"]},{"raw_affiliation_string":"CR2P, UMR 7207 CNRS-MNHN-UPMC, D\u00e9partement Histoire de la Terre, Mus\u00e9um National d'Histoire Naturelle, B\u00e2timent de G\u00e9ologie, CP48, 57 rue Cuvier, 75005, Paris, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I1294671590","https://openalex.org/I4387155127"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007833252","display_name":"Erik Segerdell","orcid":"https://orcid.org/0000-0002-9611-1279"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erik Segerdell","raw_affiliation_strings":["Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, USA"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064320417","display_name":"Melissa Haendel","orcid":"https://orcid.org/0000-0001-9114-8737"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melissa A Haendel","raw_affiliation_strings":["Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, USA"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, USA","institution_ids":["https://openalex.org/I165690674"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christopher J Mungall","raw_affiliation_strings":["Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA USA","Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5002223413"],"corresponding_institution_ids":["https://openalex.org/I148283060"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":2.7087,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.88979154,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"5","issue":"1","first_page":"39","last_page":"39"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11340","display_name":"Marine Sponges and Natural Products","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11340","display_name":"Marine Sponges and Natural Products","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9835000038146973,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7666853666305542},{"id":"https://openalex.org/keywords/systematics","display_name":"Systematics","score":0.5401910543441772},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5329512357711792},{"id":"https://openalex.org/keywords/sponge","display_name":"Sponge","score":0.5125076770782471},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.491254985332489},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46809911727905273},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4438212215900421},{"id":"https://openalex.org/keywords/multicellular-organism","display_name":"Multicellular organism","score":0.44065189361572266},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.42218565940856934},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.42005935311317444},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.37730202078819275},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37431642413139343},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.37275445461273193},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.29450875520706177},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.2904577851295471},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2614741921424866},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.2539992332458496},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.22882813215255737},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.21026495099067688}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7666853666305542},{"id":"https://openalex.org/C41806617","wikidata":"https://www.wikidata.org/wiki/Q3516404","display_name":"Systematics","level":3,"score":0.5401910543441772},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5329512357711792},{"id":"https://openalex.org/C2778849931","wikidata":"https://www.wikidata.org/wiki/Q18960","display_name":"Sponge","level":2,"score":0.5125076770782471},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.491254985332489},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46809911727905273},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4438212215900421},{"id":"https://openalex.org/C74318829","wikidata":"https://www.wikidata.org/wiki/Q36458","display_name":"Multicellular organism","level":3,"score":0.44065189361572266},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.42218565940856934},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.42005935311317444},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.37730202078819275},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37431642413139343},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.37275445461273193},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.29450875520706177},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.2904577851295471},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2614741921424866},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.2539992332458496},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.22882813215255737},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.21026495099067688},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/2041-1480-5-39","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-39","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-39","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:25276334","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25276334","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4177528","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4177528","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-02557334v1","is_oa":true,"landing_page_url":"https://hal.science/hal-02557334","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, 2014, 5 (1), pp.39. ⟨10.1186/2041-1480-5-39⟩","raw_type":"Journal articles"},{"id":"pmh:oai:osti.gov:1626680","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626680","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1186/2041-1480-5-39","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-39","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-39","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1286251239","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G190484360","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G2503023272","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2720550028","display_name":null,"funder_award_id":"E-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G2776628454","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G30714459","display_name":null,"funder_award_id":"DE-AC02-05CH11231.","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G384921450","display_name":"Collaborative Research:   AToL:  PorToL - The Porifera Tree of Life Project","funder_award_id":"0829986","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4095027873","display_name":null,"funder_award_id":"DEB-0956049","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G425189044","display_name":null,"funder_award_id":"DE-AC02-05CH","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4392917094","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4841871747","display_name":null,"funder_award_id":"DE_AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4963411061","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5051252750","display_name":null,"funder_award_id":"1208310","funder_id":"https://openalex.org/F4320337400","funder_display_name":"Division of Environmental Biology"},{"id":"https://openalex.org/G5123489780","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G5315912995","display_name":null,"funder_award_id":"11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G542631466","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5802748842","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5854489635","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231.","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6181692023","display_name":"RCN: Phenotype Ontology Research Coordination Network","funder_award_id":"0956049","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6189320756","display_name":null,"funder_award_id":"No. DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G6330738325","display_name":null,"funder_award_id":"DE_AC02_05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6429026066","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7203387412","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G7233692708","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7340683655","display_name":null,"funder_award_id":"E-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7406122311","display_name":null,"funder_award_id":"AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7664691372","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7672463193","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7825954517","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G805243471","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8431251193","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G8474159932","display_name":"Collaborative Research:   AVATOL - Next Generation Phenomics for the Tree of Life","funder_award_id":"1208310","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8675020064","display_name":null,"funder_award_id":"DE-AC02_05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G8903227471","display_name":null,"funder_award_id":"DE-AC02-05CH11231.","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G897164627","display_name":null,"funder_award_id":"DE-AC02_05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337400","display_name":"Division of Environmental Biology","ror":"https://ror.org/03g87he71"},{"id":"https://openalex.org/F4320337480","display_name":"Basic Energy Sciences","ror":"https://ror.org/05mg91w61"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2165720102.pdf","grobid_xml":"https://content.openalex.org/works/W2165720102.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W52732401","https://openalex.org/W63642558","https://openalex.org/W64998266","https://openalex.org/W85784277","https://openalex.org/W87308216","https://openalex.org/W168998310","https://openalex.org/W192221291","https://openalex.org/W1505011908","https://openalex.org/W1512818934","https://openalex.org/W1539380911","https://openalex.org/W1541298030","https://openalex.org/W1564494788","https://openalex.org/W1586696788","https://openalex.org/W1599654861","https://openalex.org/W1757909678","https://openalex.org/W1972521030","https://openalex.org/W1978963097","https://openalex.org/W1986006530","https://openalex.org/W1989936708","https://openalex.org/W1996599952","https://openalex.org/W2002507929","https://openalex.org/W2022682117","https://openalex.org/W2024954760","https://openalex.org/W2027319748","https://openalex.org/W2049597079","https://openalex.org/W2055050047","https://openalex.org/W2057096130","https://openalex.org/W2068309352","https://openalex.org/W2079193485","https://openalex.org/W2079236594","https://openalex.org/W2081836531","https://openalex.org/W2090307546","https://openalex.org/W2096704019","https://openalex.org/W2103017472","https://openalex.org/W2107597868","https://openalex.org/W2110301462","https://openalex.org/W2113142309","https://openalex.org/W2116034137","https://openalex.org/W2124991490","https://openalex.org/W2130011177","https://openalex.org/W2132120234","https://openalex.org/W2138108091","https://openalex.org/W2138900077","https://openalex.org/W2140611297","https://openalex.org/W2143666974","https://openalex.org/W2157790618","https://openalex.org/W2159033162","https://openalex.org/W2164263038","https://openalex.org/W2206015784","https://openalex.org/W2208831921","https://openalex.org/W2726907005","https://openalex.org/W3100767471","https://openalex.org/W4285719527","https://openalex.org/W7026666889"],"related_works":["https://openalex.org/W1506177826","https://openalex.org/W72173000","https://openalex.org/W26549824","https://openalex.org/W1794266373","https://openalex.org/W2066281582","https://openalex.org/W2732632690","https://openalex.org/W2127299687","https://openalex.org/W2021890938","https://openalex.org/W2159818280","https://openalex.org/W2150106658"],"abstract_inverted_index":{"By":[0],"standardizing":[1],"character":[2,27],"representations,":[3],"we":[4],"hope":[5],"to":[6,16,25,35,67,76,87,95],"facilitate":[7,70],"more":[8,68],"rapid":[9],"description":[10],"and":[11,24,73],"identification":[12],"of":[13,33,40,45,64,83,98],"sponge":[14],"taxa,":[15,89],"allow":[17],"integration":[18],"with":[19],"other":[20],"evolutionary":[21],"database":[22],"systems,":[23],"perform":[26],"mapping":[28],"across":[29],"the":[30,38,46,61,65,90],"major":[31],"clades":[32],"sponges":[34],"better":[36],"understand":[37],"evolution":[39],"morphological":[41],"features.":[42],"Future":[43],"applications":[44],"ontology":[47,66,91],"will":[48],"focus":[49],"on":[50],"creating":[51],"(1)":[52],"ontology-based":[53],"species":[54,71],"descriptions;":[55],"(2)":[56],"taxonomic":[57],"keys":[58],"that":[59],"use":[60],"nested":[62],"terms":[63],"quickly":[69],"identifications;":[72],"(3)":[74],"methods":[75],"map":[77],"anatomical":[78],"characters":[79],"onto":[80],"molecular":[81],"phylogenies":[82],"sponges.":[84],"In":[85],"addition":[86],"modern":[88],"is":[92],"being":[93],"extended":[94],"include":[96],"features":[97],"fossil":[99],"taxa.":[100]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}