{"id":"https://openalex.org/W2137362149","doi":"https://doi.org/10.1186/2041-1480-5-34","title":"Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology","display_name":"Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2137362149","doi":"https://doi.org/10.1186/2041-1480-5-34","mag":"2137362149","pmid":"https://pubmed.ncbi.nlm.nih.gov/25140222"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-5-34","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-34","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-34","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-34","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037935786","display_name":"Wasila Dahdul","orcid":"https://orcid.org/0000-0003-3162-7490"},"institutions":[{"id":"https://openalex.org/I189957204","display_name":"University of South Dakota","ror":"https://ror.org/0043h8f16","country_code":"US","type":"education","lineage":["https://openalex.org/I189957204"]},{"id":"https://openalex.org/I6002401","display_name":"National Evolutionary Synthesis Center","ror":"https://ror.org/001ykb961","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I6002401"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wasila M Dahdul","raw_affiliation_strings":["Department of Biology, University of South Dakota, Vermillion, SD, USA ; National Evolutionary Synthesis Center, Durham, NC, USA","National Evolutionary Synthesis Center","University of South Dakota"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of South Dakota, Vermillion, SD, USA ; National Evolutionary Synthesis Center, Durham, NC, USA","institution_ids":["https://openalex.org/I6002401"]},{"raw_affiliation_string":"National Evolutionary Synthesis Center","institution_ids":["https://openalex.org/I6002401"]},{"raw_affiliation_string":"University of South Dakota","institution_ids":["https://openalex.org/I189957204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044387303","display_name":"Hong Cui","orcid":"https://orcid.org/0000-0001-6218-283X"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hong Cui","raw_affiliation_strings":["School of Information Resource and Library Science, University of Arizona, Tucson, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Resource and Library Science, University of Arizona, Tucson, AZ, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020099887","display_name":"Paula Mabee","orcid":"https://orcid.org/0000-0002-8455-3213"},"institutions":[{"id":"https://openalex.org/I189957204","display_name":"University of South Dakota","ror":"https://ror.org/0043h8f16","country_code":"US","type":"education","lineage":["https://openalex.org/I189957204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paula M Mabee","raw_affiliation_strings":["Department of Biology, University of South Dakota, Vermillion, SD, USA","#N#        University of South Dakota"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of South Dakota, Vermillion, SD, USA","institution_ids":["https://openalex.org/I189957204"]},{"raw_affiliation_string":"#N#        University of South Dakota","institution_ids":["https://openalex.org/I189957204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J Mungall","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, CA, USA","Lawrence Berkeley National Laboratory"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Lawrence Berkeley National Laboratory","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053103903","display_name":"David Osumi-Sutherland","orcid":"https://orcid.org/0000-0002-7073-9172"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Osumi-Sutherland","raw_affiliation_strings":["Department of Genetics, University of Cambridge, Cambridge, UK","Department of Genetics University of Cambridge, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Genetics University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015253000","display_name":"Ramona Walls","orcid":"https://orcid.org/0000-0001-8815-0078"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ramona L Walls","raw_affiliation_strings":["The iPlant Collaborative, Bio5 Institute, University of Arizona, Tucson, AZ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The iPlant Collaborative, Bio5 Institute, University of Arizona, Tucson, AZ, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064320417","display_name":"Melissa Haendel","orcid":"https://orcid.org/0000-0001-9114-8737"},"institutions":[{"id":"https://openalex.org/I165690674","display_name":"Oregon Health & Science University","ror":"https://ror.org/009avj582","country_code":"US","type":"education","lineage":["https://openalex.org/I165690674"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melissa A Haendel","raw_affiliation_strings":["Library and Department of Medical Informatics & Epidemiology, Oregon Health & Science University, Portland, OR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Library and Department of Medical Informatics & Epidemiology, Oregon Health & Science University, Portland, OR, USA","institution_ids":["https://openalex.org/I165690674"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":2.2097,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.88341777,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"5","issue":"1","first_page":"34","last_page":"34"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9764999747276306,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9710999727249146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6399134397506714},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.5992815494537354},{"id":"https://openalex.org/keywords/taxon","display_name":"Taxon","score":0.5235642790794373},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5112369060516357},{"id":"https://openalex.org/keywords/dorsum","display_name":"Dorsum","score":0.4868425726890564},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48016849160194397},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4560645818710327},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.43181371688842773},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32726022601127625},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.24161988496780396},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.22649946808815002}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6399134397506714},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.5992815494537354},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.5235642790794373},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5112369060516357},{"id":"https://openalex.org/C140530291","wikidata":"https://www.wikidata.org/wiki/Q1225063","display_name":"Dorsum","level":2,"score":0.4868425726890564},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48016849160194397},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4560645818710327},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.43181371688842773},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32726022601127625},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.24161988496780396},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.22649946808815002},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/2041-1480-5-34","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-34","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-34","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"mag:25140222","is_oa":false,"landing_page_url":"https://dialnet.unirioja.es/servlet/articulo?codigo=1074989","pdf_url":null,"source":{"id":"https://openalex.org/S4306522139","display_name":"PC world","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PC world","raw_type":null},{"id":"pmid:25140222","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25140222","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:osti.gov:1626678","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626678","pdf_url":"https://www.osti.gov/servlets/purl/1626678","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.642.3229","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.642.3229","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.jbiomedsem.com/content/pdf/2041-1480-5-34.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:3105973","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4137724","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-5-34","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-34","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-34","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5099999904632568}],"awards":[{"id":"https://openalex.org/G1098430682","display_name":null,"funder_award_id":"EF-0905606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1286251239","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G1965483100","display_name":null,"funder_award_id":"DBI-0641025","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2229575356","display_name":null,"funder_award_id":"-0423641","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2391278426","display_name":null,"funder_award_id":"NSF EF-0423641","funder_id":"https://openalex.org/F4320309855","funder_display_name":"National Evolutionary Synthesis Center"},{"id":"https://openalex.org/G2503023272","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2610688614","display_name":null,"funder_award_id":"0423641","funder_id":"https://openalex.org/F4320337401","funder_display_name":"Division of Emerging Frontiers"},{"id":"https://openalex.org/G2776628454","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G2843378090","display_name":null,"funder_award_id":"0905606","funder_id":"https://openalex.org/F4320309855","funder_display_name":"National Evolutionary Synthesis Center"},{"id":"https://openalex.org/G2993633737","display_name":null,"funder_award_id":"DBI-1062404","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3446960996","display_name":"Linking Evolution to Genomics Using Phenotype Ontologies","funder_award_id":"0641025","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3621937125","display_name":null,"funder_award_id":"0905606","funder_id":"https://openalex.org/F4320337401","funder_display_name":"Division of Emerging Frontiers"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4105349646","display_name":null,"funder_award_id":"DBI-1062542","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4121577249","display_name":null,"funder_award_id":"5R24OD011883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4582215561","display_name":null,"funder_award_id":"EF-0423641","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4963411061","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G542631466","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5429225240","display_name":"COLLABORATIVE RESEARCH: ABI Development:  Ontology-enabled reasoning across phenotypes from evolution and model organisms","funder_award_id":"1062404","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5768129421","display_name":"Collaborative research: ABI Development: Ontology-enabled reasoning across phenotypes from evolution and model organisms","funder_award_id":"1062542","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5968137333","display_name":null,"funder_award_id":"EF-0423641","funder_id":"https://openalex.org/F4320337401","funder_display_name":"Division of Emerging Frontiers"},{"id":"https://openalex.org/G6124298671","display_name":"PSCIC Full Proposal: The iPlant Collaborative: A Cyberinfrastructure-Centered Community for a New Plant Biology","funder_award_id":"0735191","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6181692023","display_name":"RCN: Phenotype Ontology Research Coordination Network","funder_award_id":"0956049","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6652958823","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6884266392","display_name":null,"funder_award_id":"EF-0423641","funder_id":"https://openalex.org/F4320309855","funder_display_name":"National Evolutionary Synthesis Center"},{"id":"https://openalex.org/G694679094","display_name":null,"funder_award_id":"DBI-0735191","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7203387412","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G7233692708","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7382415512","display_name":"CSBE: A Place for Evolutionary Synthesis in North Carolina's Research Triangle","funder_award_id":"0423641","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7454462943","display_name":null,"funder_award_id":"DBI-0735191","funder_id":"https://openalex.org/F4320337398","funder_display_name":"Division of Biological Infrastructure"},{"id":"https://openalex.org/G7538560101","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7672463193","display_name":null,"funder_award_id":"No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7809106007","display_name":"National Evolutionary Synthesis Center","funder_award_id":"0905606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7928461881","display_name":null,"funder_award_id":"EF-0905606","funder_id":"https://openalex.org/F4320309855","funder_display_name":"National Evolutionary Synthesis Center"},{"id":"https://openalex.org/G7976553526","display_name":null,"funder_award_id":"NSF EF-0905606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G805243471","display_name":null,"funder_award_id":"Contract No. DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8299004767","display_name":null,"funder_award_id":"R24 OD011883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8372959692","display_name":null,"funder_award_id":"DBI-1062542","funder_id":"https://openalex.org/F4320337398","funder_display_name":"Division of Biological Infrastructure"},{"id":"https://openalex.org/G8431251193","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G8533050794","display_name":null,"funder_award_id":"NSF EF-0905606","funder_id":"https://openalex.org/F4320309855","funder_display_name":"National Evolutionary Synthesis Center"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320309855","display_name":"National Evolutionary Synthesis Center","ror":"https://ror.org/001ykb961"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"},{"id":"https://openalex.org/F4320337401","display_name":"Division of Emerging Frontiers","ror":"https://ror.org/01tnvpc68"},{"id":"https://openalex.org/F4320337480","display_name":"Basic Energy Sciences","ror":"https://ror.org/05mg91w61"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2137362149.pdf","grobid_xml":"https://content.openalex.org/works/W2137362149.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W63642558","https://openalex.org/W195124850","https://openalex.org/W249845531","https://openalex.org/W1505011908","https://openalex.org/W1536901845","https://openalex.org/W1541298030","https://openalex.org/W1551890621","https://openalex.org/W1555643513","https://openalex.org/W1580256897","https://openalex.org/W1598809600","https://openalex.org/W1678746504","https://openalex.org/W1920963160","https://openalex.org/W1972491673","https://openalex.org/W1976814186","https://openalex.org/W1978454187","https://openalex.org/W1978557909","https://openalex.org/W1979386184","https://openalex.org/W1987478313","https://openalex.org/W1994474588","https://openalex.org/W1997058260","https://openalex.org/W2006834210","https://openalex.org/W2009851083","https://openalex.org/W2022451103","https://openalex.org/W2030545022","https://openalex.org/W2034514363","https://openalex.org/W2066499485","https://openalex.org/W2075182631","https://openalex.org/W2078510393","https://openalex.org/W2089208780","https://openalex.org/W2096704019","https://openalex.org/W2103260426","https://openalex.org/W2105731904","https://openalex.org/W2105808252","https://openalex.org/W2108569257","https://openalex.org/W2110201610","https://openalex.org/W2116034137","https://openalex.org/W2122711518","https://openalex.org/W2124802940","https://openalex.org/W2124991490","https://openalex.org/W2125533958","https://openalex.org/W2127587858","https://openalex.org/W2128683321","https://openalex.org/W2129494070","https://openalex.org/W2135790475","https://openalex.org/W2142139243","https://openalex.org/W2143666974","https://openalex.org/W2143742443","https://openalex.org/W2147555557","https://openalex.org/W2147834895","https://openalex.org/W2148084209","https://openalex.org/W2152839099","https://openalex.org/W2160126273","https://openalex.org/W2163670493","https://openalex.org/W2163815564","https://openalex.org/W2165511961","https://openalex.org/W2322425150","https://openalex.org/W2477690160","https://openalex.org/W2554321399","https://openalex.org/W2586168167","https://openalex.org/W2768706205","https://openalex.org/W4212989115","https://openalex.org/W7026666889"],"related_works":["https://openalex.org/W2350593162","https://openalex.org/W2390350206","https://openalex.org/W1969477129","https://openalex.org/W2921208823","https://openalex.org/W2353483812","https://openalex.org/W2131808775","https://openalex.org/W2130038259","https://openalex.org/W2360756181","https://openalex.org/W2374093222","https://openalex.org/W2359533638"],"abstract_inverted_index":{"BACKGROUND:":[0],"Spatial":[1,59,139],"terminology":[2],"is":[3,120,141,167],"used":[4,102,121,169],"in":[5,14,36,108,136,144,202],"anatomy":[6,50,137,145],"to":[7,42,45,62,73,122],"indicate":[8],"precise,":[9],"relative":[10],"positions":[11],"of":[12,26,66,77,111,126,186,204],"structures":[13,205],"an":[15],"organism.":[16],"While":[17],"these":[18],"terms":[19],"are":[20,191],"often":[21],"standardized":[22,174],"within":[23,209],"specific":[24],"fields":[25],"biology,":[27],"they":[28],"can":[29,38,100],"differ":[30],"dramatically":[31],"across":[32,53,71,183,211],"taxa.":[33,187],"Such":[34],"differences":[35],"usage":[37],"impair":[39],"our":[40],"ability":[41],"unambiguously":[43],"refer":[44],"anatomical":[46,90,127,133,175],"position":[47,203],"when":[48],"comparing":[49],"or":[51],"phenotypes":[52],"species.":[54,212],"We":[55],"developed":[56],"the":[57,64,75],"Biological":[58],"Ontology":[60],"(BSPO)":[61],"standardize":[63],"description":[65],"spatial":[67,149],"and":[68,86,96,107,116,180,210],"topological":[69],"relationships":[70],"taxa":[72],"enable":[74],"discovery":[76],"comparable":[78],"phenotypes.":[79],"RESULTS:":[80],"BSPO":[81,119,166],"currently":[82,168],"contains":[83],"146":[84],"classes":[85,135,190],"58":[87],"relations":[88,150],"representing":[89],"axes,":[91],"gradients,":[92],"regions,":[93],"planes,":[94],"sides,":[95],"surfaces.":[97],"These":[98],"concepts":[99],"be":[101],"at":[103],"multiple":[104],"biological":[105],"scales":[106],"a":[109,124,184],"diversity":[110,185],"taxa,":[112],"including":[113],"plants,":[114],"animals":[115],"fungi.":[117],"The":[118,165],"provide":[123],"source":[125],"location":[128,189],"descriptors":[129,176],"for":[130,177,194],"logically":[131],"defining":[132],"entity":[134],"ontologies.":[138],"reasoning":[140],"further":[142],"enhanced":[143],"ontologies":[146],"by":[147,170],"integrating":[148],"such":[151,198],"as":[152,199],"dorsal_to":[153,160],"into":[154],"class":[155],"descriptions":[156],"(e.g.,":[157],"'dorsolateral":[158],"placode'":[159],"some":[161],"'epibranchial":[162],"placode').":[163],"CONCLUSIONS:":[164],"projects":[171],"that":[172],"require":[173],"phenotype":[178],"annotation":[179],"ontology":[181],"integration":[182],"Anatomical":[188],"also":[192],"useful":[193],"describing":[195],"phenotypic":[196],"differences,":[197],"morphological":[200],"variation":[201],"resulting":[206],"from":[207],"evolution":[208]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":11}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2025-10-10T00:00:00"}