{"id":"https://openalex.org/W2098936704","doi":"https://doi.org/10.1186/2041-1480-5-25","title":"The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation","display_name":"The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation","publication_year":2014,"publication_date":"2014-06-02","ids":{"openalex":"https://openalex.org/W2098936704","doi":"https://doi.org/10.1186/2041-1480-5-25","mag":"2098936704","pmid":"https://pubmed.ncbi.nlm.nih.gov/25068035"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-5-25","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-25","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-25","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-25","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037878913","display_name":"James Malone","orcid":"https://orcid.org/0000-0002-1615-2899"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James Malone","raw_affiliation_strings":["EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK","EMBL\u2013EBI, Wellcome Trust Genome Campus, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I87048295","https://openalex.org/I1303153112"]},{"raw_affiliation_string":"EMBL\u2013EBI, Wellcome Trust Genome Campus, Cambridge, UK","institution_ids":["https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113698458","display_name":"Andy Brown","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andy Brown","raw_affiliation_strings":["School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087271600","display_name":"Allyson Lister","orcid":"https://orcid.org/0000-0002-7702-4495"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Allyson L Lister","raw_affiliation_strings":["School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080837511","display_name":"Jon Ison","orcid":"https://orcid.org/0000-0001-6666-1520"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jon Ison","raw_affiliation_strings":["EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK","EMBL\u2013EBI, Wellcome Trust Genome Campus, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I87048295","https://openalex.org/I1303153112"]},{"raw_affiliation_string":"EMBL\u2013EBI, Wellcome Trust Genome Campus, Cambridge, UK","institution_ids":["https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014513655","display_name":"Duncan Hull","orcid":"https://orcid.org/0000-0003-2387-503X"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Duncan Hull","raw_affiliation_strings":["School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020620537","display_name":"Helen Parkinson","orcid":"https://orcid.org/0000-0003-3035-4195"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Helen Parkinson","raw_affiliation_strings":["EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK","EMBL\u2013EBI, Wellcome Trust Genome Campus, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I87048295","https://openalex.org/I1303153112"]},{"raw_affiliation_string":"EMBL\u2013EBI, Wellcome Trust Genome Campus, Cambridge, UK","institution_ids":["https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049799218","display_name":"Robert Stevens","orcid":"https://orcid.org/0000-0002-6038-9025"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert Stevens","raw_affiliation_strings":["School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Oxford Road, Manchester, M13 9PL, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Sch. of Comput. Sci., Univ. of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":3.2107,"has_fulltext":true,"cited_by_count":93,"citation_normalized_percentile":{"value":0.92608216,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"5","issue":"1","first_page":"25","last_page":"25"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8471999764442444,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8471999764442444,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.05040000006556511,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.03099999949336052,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8388650417327881},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.637539803981781},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6124103665351868},{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.597830057144165},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5680781602859497},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5064781904220581},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4664473235607147},{"id":"https://openalex.org/keywords/digital-curation","display_name":"Digital curation","score":0.4418150782585144},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42188581824302673},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3385026156902313},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.310467928647995},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.16916540265083313},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13565310835838318},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.08899432420730591}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8388650417327881},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.637539803981781},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6124103665351868},{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.597830057144165},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5680781602859497},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5064781904220581},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4664473235607147},{"id":"https://openalex.org/C2775953033","wikidata":"https://www.wikidata.org/wiki/Q5276060","display_name":"Digital curation","level":2,"score":0.4418150782585144},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42188581824302673},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3385026156902313},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.310467928647995},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.16916540265083313},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13565310835838318},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.08899432420730591},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1186/2041-1480-5-25","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-25","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-25","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:25068035","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25068035","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/6db71c20-378e-4539-bfc1-38321a6f33b5","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/6db71c20-378e-4539-bfc1-38321a6f33b5","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Malone, J, Brown, A, Lister, A, Ison, J, Hull, D, Parkinson, H & Stevens, R 2014, 'The Software Ontology (SWO): A Resource for Reproducibility in Biomedical Data Analysis, Curation and Digital Preservation', Journal of Biomedical Semantics, vol. 5, no. 1. https://doi.org/10.1186/2041-1480-5-25","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4098953","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4098953","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/6db71c20-378e-4539-bfc1-38321a6f33b5","is_oa":true,"landing_page_url":"http://www.jbiomedsem.com/content/5/1/25","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Malone, J, Brown, A, Lister, A, Ison, J, Hull, D, Parkinson, H & Stevens, R 2014, 'The Software Ontology (SWO): A Resource for Reproducibility in Biomedical Data Analysis, Curation and Digital Preservation', Journal of Biomedical Semantics, vol. 5, no. 1. https://doi.org/10.1186/2041-1480-5-25","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.25504/fairsharing.sp3szt","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.sp3szt","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-5-25","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-25","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-25","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.4399999976158142,"display_name":"Responsible consumption and production"}],"awards":[{"id":"https://openalex.org/G4660795319","display_name":null,"funder_award_id":"EP/G026238/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5596758552","display_name":"myGrid: A Platform for e-Biology Renewal","funder_award_id":"EP/G026238/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6875474577","display_name":null,"funder_award_id":"EP/C536444/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"},{"id":"https://openalex.org/F4320320309","display_name":"Joint Information Systems Committee","ror":"https://ror.org/01rv9gx86"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2098936704.pdf","grobid_xml":"https://content.openalex.org/works/W2098936704.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1480447656","https://openalex.org/W1505962635","https://openalex.org/W1518959137","https://openalex.org/W1528232373","https://openalex.org/W1537001026","https://openalex.org/W1603666523","https://openalex.org/W1714132059","https://openalex.org/W1757909678","https://openalex.org/W1983833794","https://openalex.org/W1990890881","https://openalex.org/W2008985174","https://openalex.org/W2009569628","https://openalex.org/W2011562771","https://openalex.org/W2016976521","https://openalex.org/W2022406334","https://openalex.org/W2022451103","https://openalex.org/W2030584203","https://openalex.org/W2033377040","https://openalex.org/W2041946515","https://openalex.org/W2049907037","https://openalex.org/W2084104913","https://openalex.org/W2090019816","https://openalex.org/W2094953050","https://openalex.org/W2098936704","https://openalex.org/W2101410543","https://openalex.org/W2103017472","https://openalex.org/W2107133912","https://openalex.org/W2109904151","https://openalex.org/W2112015698","https://openalex.org/W2113310608","https://openalex.org/W2115523386","https://openalex.org/W2116034137","https://openalex.org/W2136482257","https://openalex.org/W2137628925","https://openalex.org/W2137653635","https://openalex.org/W2141541659","https://openalex.org/W2143543488","https://openalex.org/W2147018385","https://openalex.org/W2149378423","https://openalex.org/W2160697532","https://openalex.org/W2160943260","https://openalex.org/W2335361608","https://openalex.org/W2406725163","https://openalex.org/W4235777167","https://openalex.org/W4406855331","https://openalex.org/W4407687382"],"related_works":["https://openalex.org/W2400390830","https://openalex.org/W2598248896","https://openalex.org/W2907605431","https://openalex.org/W842882028","https://openalex.org/W2138555252","https://openalex.org/W2807479512","https://openalex.org/W2277259138","https://openalex.org/W3135458263","https://openalex.org/W4231012597","https://openalex.org/W3200944274"],"abstract_inverted_index":{"MOTIVATION:":[0],"Biomedical":[1],"ontologists":[2],"to":[3,28,73,77,101,108,130,196,234,279],"date":[4],"have":[5],"concentrated":[6],"on":[7],"ontological":[8],"descriptions":[9,29,63],"of":[10,30,49,61,64,68,98,151,155,210,221,231,270],"biomedical":[11,202,212,222,271],"entities":[12,37,223],"such":[13,248],"as":[14],"gene":[15],"products":[16],"and":[17,21,56,88,104,136,166,171,185,224,258,273],"their":[18],"attributes,":[19],"phenotypes":[20],"so":[22,172],"on.":[23,173],"Recently,":[24,174],"effort":[25],"has":[26,111,177],"diversified":[27],"the":[31,47,50,65,109,115,123,134,149,175,211,219,241,254,268,300],"laboratory":[32],"investigations":[33,239],"by":[34,157,238,260],"which":[35],"these":[36,54],"were":[38,227],"produced.":[39],"However,":[40],"much":[41],"biological":[42],"insight":[43],"is":[44,58,95,122,144,192,207,216,274,291],"gained":[45],"from":[46,53,113],"analysis":[48],"data":[51,80,164,168,184,236],"produced":[52,237,275],"investigations,":[55],"there":[57],"a":[59,96,152,180,249],"lack":[60],"adequate":[62],"wide":[66],"range":[67,154],"software":[69,99,198,232],"that":[70,147,215,251],"are":[71,81],"central":[72],"bioinformatics.":[74,189],"We":[75,126],"need":[76],"describe":[78,197],"how":[79,225],"analyzed":[82],"for":[83,133,182,218],"discovery,":[84],"audit":[85],"trails,":[86],"provenance":[87],"reproducibility.":[89],"RESULTS:":[90],"The":[91,142,190,205,263,288],"Software":[92,289,301],"Ontology":[93,290,302],"(SWO)":[94],"description":[97,220],"used":[100,127,195,199,233],"store,":[102],"manage":[103],"analyze":[105,235],"data.":[106],"Input":[107],"SWO":[110,135,176,191,206,264],"come":[112],"beyond":[114],"life":[116,124,242],"sciences,":[117],"but":[118],"its":[119,160,261],"main":[120],"focus":[121],"sciences.":[125],"agile":[128],"techniques":[129,277],"gather":[131],"input":[132],"keep":[137,280],"engagement":[138],"with":[139,284],"our":[140],"users.":[141,262],"result":[143],"an":[145,294],"ontology":[146,213,230],"meets":[148],"needs":[150],"broad":[153],"users":[156],"describing":[158,183],"software,":[159],"information":[161],"processing":[162],"tasks,":[163],"inputs":[165],"outputs,":[167],"formats":[169],"versions":[170],"incorporated":[178],"EDAM,":[179],"vocabulary":[181],"related":[186],"concepts":[187],"in":[188,200,240,247,282],"currently":[193],"being":[194],"multiple":[201],"applications.":[203],"CONCLUSION:":[204],"another":[208],"element":[209],"landscape":[214,269],"necessary":[217],"they":[226],"discovered.":[228],"An":[229],"sciences":[243],"can":[244,304],"be":[245,305],"made":[246],"way":[250],"it":[252,281],"covers":[253],"important":[255],"features":[256],"requested":[257],"prioritized":[259],"thus":[265],"fits":[266],"into":[267],"ontologies":[272],"using":[276],"designed":[278],"line":[283],"user's":[285],"needs.":[286],"AVAILABILITY:":[287],"available":[292],"under":[293],"Apache":[295],"2.0":[296],"license":[297],"at":[298,307],"http://theswo.sourceforge.net/;":[299],"blog":[303],"read":[306],"http://softwareontology.wordpress.com.":[308]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":15},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2016-06-24T00:00:00"}
