{"id":"https://openalex.org/W2157412238","doi":"https://doi.org/10.1186/2041-1480-5-22","title":"Mining characteristics of epidemiological studies from Medline: a case study in obesity","display_name":"Mining characteristics of epidemiological studies from Medline: a case study in obesity","publication_year":2014,"publication_date":"2014-05-19","ids":{"openalex":"https://openalex.org/W2157412238","doi":"https://doi.org/10.1186/2041-1480-5-22","mag":"2157412238","pmid":"https://pubmed.ncbi.nlm.nih.gov/24949194"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-5-22","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-22","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-22","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-22","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088068293","display_name":"George Karystianis","orcid":"https://orcid.org/0000-0003-3491-361X"},"institutions":[{"id":"https://openalex.org/I2799725268","display_name":"Manchester Academic Health Science Centre","ror":"https://ror.org/04rrkhs81","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799725268"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"George Karystianis","raw_affiliation_strings":["School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, UK ; Health e-Research Centre, Manchester, UK","School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, UK ; Health e-Research Centre, Manchester, UK","institution_ids":["https://openalex.org/I2799725268","https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011177296","display_name":"Iain Buchan","orcid":"https://orcid.org/0000-0003-3392-1650"},"institutions":[{"id":"https://openalex.org/I2799725268","display_name":"Manchester Academic Health Science Centre","ror":"https://ror.org/04rrkhs81","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799725268"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Iain Buchan","raw_affiliation_strings":["Health e-Research Centre, Manchester, UK ; Centre for Health Informatics, Institute of Population Health, University of Manchester, Manchester, UK","Health e-Research Centre, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health e-Research Centre, Manchester, UK ; Centre for Health Informatics, Institute of Population Health, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I2799725268"]},{"raw_affiliation_string":"Health e-Research Centre, Manchester, UK","institution_ids":["https://openalex.org/I2799725268"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005912060","display_name":"Goran Nenadi\u0107","orcid":"https://orcid.org/0000-0003-0795-5363"},"institutions":[{"id":"https://openalex.org/I2799725268","display_name":"Manchester Academic Health Science Centre","ror":"https://ror.org/04rrkhs81","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799725268"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Goran Nenadic","raw_affiliation_strings":["School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, UK ; Health e-Research Centre, Manchester, UK","School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, UK ; Health e-Research Centre, Manchester, UK","institution_ids":["https://openalex.org/I2799725268","https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science, University of Manchester, Kilburn Building, Oxford Road, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5005912060"],"corresponding_institution_ids":["https://openalex.org/I2799725268","https://openalex.org/I28407311"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":0.78,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.71165911,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"5","issue":"1","first_page":"22","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5561000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5561000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12488","display_name":"Mental Health via Writing","score":0.061900001019239426,"subfield":{"id":"https://openalex.org/subfields/3207","display_name":"Social Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.05609999969601631,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/epidemiology","display_name":"Epidemiology","score":0.783155083656311},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.6095454692840576},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.586855411529541},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5630757808685303},{"id":"https://openalex.org/keywords/systematic-review","display_name":"Systematic review","score":0.5073408484458923},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43822306394577026},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4356954097747803},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.38311827182769775},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3353087604045868},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.22721236944198608},{"id":"https://openalex.org/keywords/environmental-health","display_name":"Environmental health","score":0.20691534876823425}],"concepts":[{"id":"https://openalex.org/C107130276","wikidata":"https://www.wikidata.org/wiki/Q133805","display_name":"Epidemiology","level":2,"score":0.783155083656311},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.6095454692840576},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.586855411529541},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5630757808685303},{"id":"https://openalex.org/C189708586","wikidata":"https://www.wikidata.org/wiki/Q1504425","display_name":"Systematic review","level":3,"score":0.5073408484458923},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43822306394577026},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4356954097747803},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.38311827182769775},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3353087604045868},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.22721236944198608},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.20691534876823425},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/2041-1480-5-22","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-22","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-22","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:24949194","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24949194","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/f8ea1d98-70da-4ab8-9bf9-4886868700f2","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/f8ea1d98-70da-4ab8-9bf9-4886868700f2","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Karystianis, G, Buchan, I & Nenadic, G 2014, 'Mining characteristics of epidemiological studies from Medline: a case study in obesity.', Journal of Biomedical Semantics, vol. 5. https://doi.org/10.1186/2041-1480-5-22","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3037045","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4062908","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-5-22","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-22","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-22","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.8399999737739563,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2570180299","display_name":null,"funder_award_id":"ES/J010014/1","funder_id":"https://openalex.org/F4320334630","funder_display_name":"Economic and Social Research Council"},{"id":"https://openalex.org/G3163827178","display_name":"Obesity e-Lab: e-Infrastructure for inter-disciplinary collaborative research into obesity","funder_award_id":"ES/F029721/1","funder_id":"https://openalex.org/F4320334630","funder_display_name":"Economic and Social Research Council"},{"id":"https://openalex.org/G4457955224","display_name":null,"funder_award_id":"MR/K006665/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G4466513534","display_name":"Preparing MethodBox for National Service","funder_award_id":"ES/J010014/1","funder_id":"https://openalex.org/F4320334630","funder_display_name":"Economic and Social Research Council"},{"id":"https://openalex.org/G7346109562","display_name":null,"funder_award_id":"MC_PC_13042","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G7798569195","display_name":null,"funder_award_id":"ES/F029721/1","funder_id":"https://openalex.org/F4320334630","funder_display_name":"Economic and Social Research Council"}],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334630","display_name":"Economic and Social Research Council","ror":"https://ror.org/03n0ht308"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2157412238.pdf","grobid_xml":"https://content.openalex.org/works/W2157412238.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W107258648","https://openalex.org/W110607275","https://openalex.org/W199610845","https://openalex.org/W1553529581","https://openalex.org/W1966475681","https://openalex.org/W2020959315","https://openalex.org/W2029115643","https://openalex.org/W2031835688","https://openalex.org/W2032570581","https://openalex.org/W2035682999","https://openalex.org/W2047108227","https://openalex.org/W2047351079","https://openalex.org/W2049107599","https://openalex.org/W2072419837","https://openalex.org/W2083475779","https://openalex.org/W2097426580","https://openalex.org/W2099188065","https://openalex.org/W2100627415","https://openalex.org/W2101013878","https://openalex.org/W2103397879","https://openalex.org/W2114388055","https://openalex.org/W2118244746","https://openalex.org/W2122402213","https://openalex.org/W2133468629","https://openalex.org/W2134568263","https://openalex.org/W2162468806","https://openalex.org/W2168905447","https://openalex.org/W2171233986","https://openalex.org/W2492593290","https://openalex.org/W2586281911","https://openalex.org/W2731757584"],"related_works":["https://openalex.org/W599478544","https://openalex.org/W1576711507","https://openalex.org/W647896512","https://openalex.org/W3121757313","https://openalex.org/W562084794","https://openalex.org/W4231462739","https://openalex.org/W167390939","https://openalex.org/W4385505472","https://openalex.org/W2070311887","https://openalex.org/W2115099528"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,167],"health":[2],"sciences":[3],"literature":[4],"incorporates":[5],"a":[6,90,127,158,181,201],"relatively":[7],"large":[8,159],"subset":[9],"of":[10,37,59,69,73,111,124,132,153,205],"epidemiological":[11,60,70,134,161,177,206],"studies":[12,61],"that":[13,52,77,94,170],"focus":[14],"on":[15],"population-level":[16],"findings,":[17],"including":[18],"various":[19],"determinants,":[20],"outcomes":[21],"and":[22,39,42,84,105,116,141,146,208,214],"correlations.":[23],"Extracting":[24],"structured":[25],"information":[26,49],"about":[27],"those":[28],"characteristics":[29,58,178],"would":[30],"be":[31,197],"useful":[32],"for":[33,40],"more":[34,202],"complete":[35,203],"understanding":[36,211],"diseases":[38],"meta-analyses":[41],"systematic":[43,215],"reviews.":[44,216],"RESULTS:":[45],"We":[46,87,149],"present":[47],"an":[48],"extraction":[50],"approach":[51,93,173],"enables":[53],"users":[54],"to":[55,99,157,164,199],"identify":[56,175],"key":[57,176],"from":[62,185],"MEDLINE":[63],"abstracts.":[64,187],"It":[65],"extracts":[66],"six":[67],"types":[68],"characteristic:":[71],"design":[72],"the":[74,109,136,151,155,171,191,193],"study,":[75],"population":[76],"has":[78,95],"been":[79,96],"studied,":[80],"exposure,":[81,114],"outcome,":[82],"covariates":[83],"effect":[85],"size.":[86],"have":[88],"developed":[89],"generic":[91],"rule-based":[92],"designed":[97],"according":[98],"semantic":[100],"patterns":[101],"observed":[102],"in":[103,108],"text,":[104],"tested":[106],"it":[107],"domain":[110],"obesity.":[112,165],"Identified":[113],"outcome":[115],"covariate":[117],"concepts":[118],"are":[119],"clustered":[120],"into":[121],"health-related":[122],"groups":[123],"interest.":[125],"On":[126],"manually":[128],"annotated":[129],"test":[130],"corpus":[131,162],"60":[133],"abstracts,":[135],"system":[137],"achieved":[138],"precision,":[139],"recall":[140],"F-score":[142],"between":[143],"79-100%,":[144],"80-100%":[145],"82-96%":[147],"respectively.":[148],"report":[150],"results":[152],"applying":[154],"method":[156],"scale":[160],"related":[163,186],"CONCLUSIONS:":[166],"experiments":[168],"suggest":[169],"proposed":[172],"could":[174],"associated":[179],"with":[180],"complex":[182],"clinical":[183],"problem":[184],"When":[188],"integrated":[189],"over":[190],"literature,":[192],"extracted":[194],"data":[195],"can":[196],"used":[198],"provide":[200],"picture":[204],"efforts,":[207],"thus":[209],"support":[210],"via":[212],"meta-analysis":[213]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
