{"id":"https://openalex.org/W2085093793","doi":"https://doi.org/10.1186/2041-1480-4-35","title":"HuPSON: the human physiology simulation ontology","display_name":"HuPSON: the human physiology simulation ontology","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2085093793","doi":"https://doi.org/10.1186/2041-1480-4-35","mag":"2085093793","pmid":"https://pubmed.ncbi.nlm.nih.gov/24267822"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-4-35","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-35","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-35","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-35","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029878448","display_name":"Michaela G\u00fcndel","orcid":null},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Michaela G\u00fcndel","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany. michaela.guendel@scai-extern.fraunhofer.de","Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany. michaela.guendel@scai-extern.fraunhofer.de","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060985142","display_name":"Erfan Younesi","orcid":"https://orcid.org/0000-0001-8793-2692"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Erfan Younesi","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005969740","display_name":"Ashutosh Malhotra","orcid":null},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ashutosh Malhotra","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100417459","display_name":"Jiali Wang","orcid":"https://orcid.org/0000-0002-2934-4582"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jiali Wang","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","Fraunhofer-Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Fraunhofer-Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100753259","display_name":"Hui Li","orcid":"https://orcid.org/0000-0003-0589-0359"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hui Li","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","Fraunhofer-Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Fraunhofer-Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001971914","display_name":"Bijun Zhang","orcid":"https://orcid.org/0000-0002-7596-3376"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bijun Zhang","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","Fraunhofer-Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Fraunhofer-Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054690280","display_name":"Bernard de Bono","orcid":"https://orcid.org/0000-0003-0638-5274"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bernard de Bono","raw_affiliation_strings":["University College London (UCI), Gower Street, WC1E 6BT, London, UK","University College London (UCI), London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University College London (UCI), Gower Street, WC1E 6BT, London, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"University College London (UCI), London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003915604","display_name":"Heinz-Theodor Mevissen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Heinz-Theodor Mevissen","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","Fraunhofer-Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Fraunhofer-Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5029878448"],"corresponding_institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210098248","https://openalex.org/I4210164149"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":1.4255,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.82761289,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"4","issue":"1","first_page":"35","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13286","display_name":"Modeling and Simulation Systems","score":0.862500011920929,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13286","display_name":"Modeling and Simulation Systems","score":0.862500011920929,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11195","display_name":"Simulation Techniques and Applications","score":0.0502999983727932,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12290","display_name":"Human Motion and Animation","score":0.012400000356137753,"subfield":{"id":"https://openalex.org/subfields/2207","display_name":"Control and Systems Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8676536083221436},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.856635570526123},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.730568528175354},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.6157054305076599},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.5626567006111145},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5169712901115417},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.45151758193969727},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4430925250053406},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4248388409614563},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3904447555541992},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3736662268638611},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.3722440004348755},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.31345057487487793},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09879767894744873}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8676536083221436},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.856635570526123},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.730568528175354},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.6157054305076599},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.5626567006111145},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5169712901115417},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.45151758193969727},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4430925250053406},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4248388409614563},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3904447555541992},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3736662268638611},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.3722440004348755},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.31345057487487793},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09879767894744873},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/2041-1480-4-35","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-35","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-35","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:24267822","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24267822","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:publica.fraunhofer.de:publica/235148","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/235148","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4177144","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4177144","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-4-35","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-35","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-35","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2218789016","display_name":null,"funder_award_id":"LM007885","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320318602","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29"},{"id":"https://openalex.org/F4320324659","display_name":"Istituto Ortopedico Rizzoli di Bologna","ror":"https://ror.org/02ycyys66"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2085093793.pdf","grobid_xml":"https://content.openalex.org/works/W2085093793.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W178505273","https://openalex.org/W233702296","https://openalex.org/W288863610","https://openalex.org/W1236321187","https://openalex.org/W1529522905","https://openalex.org/W1606238867","https://openalex.org/W1707425356","https://openalex.org/W1854502515","https://openalex.org/W1971722909","https://openalex.org/W1993435119","https://openalex.org/W2037020325","https://openalex.org/W2038003677","https://openalex.org/W2044257395","https://openalex.org/W2065596509","https://openalex.org/W2073061263","https://openalex.org/W2084104913","https://openalex.org/W2098162425","https://openalex.org/W2100428971","https://openalex.org/W2103260426","https://openalex.org/W2107917177","https://openalex.org/W2110301462","https://openalex.org/W2113142309","https://openalex.org/W2121723702","https://openalex.org/W2123152121","https://openalex.org/W2124165466","https://openalex.org/W2125784747","https://openalex.org/W2125904022","https://openalex.org/W2128591653","https://openalex.org/W2131294353","https://openalex.org/W2135290856","https://openalex.org/W2141869602","https://openalex.org/W2145435867","https://openalex.org/W2146871965","https://openalex.org/W2152888402","https://openalex.org/W2156997379","https://openalex.org/W2159941448","https://openalex.org/W2160717412","https://openalex.org/W2178026535","https://openalex.org/W2313615969","https://openalex.org/W2406774182","https://openalex.org/W2411102952","https://openalex.org/W2441085429","https://openalex.org/W2531363927","https://openalex.org/W3101974058","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W26549824","https://openalex.org/W2732632690","https://openalex.org/W1506177826","https://openalex.org/W72173000","https://openalex.org/W2608149786","https://openalex.org/W2130691104","https://openalex.org/W2726617685","https://openalex.org/W2084805105","https://openalex.org/W2357775360","https://openalex.org/W2365397974"],"abstract_inverted_index":{"BACKGROUND:":[0],"Large":[1],"biomedical":[2,149],"simulation":[3,46,130,153,179],"initiatives,":[4],"such":[5],"as":[6,60],"the":[7,20,41,45,86,93,96,176,185],"Virtual":[8],"Physiological":[9],"Human":[10],"(VPH),":[11],"are":[12,137],"substantially":[13],"dependent":[14],"on":[15,85,184],"controlled":[16],"vocabularies":[17],"to":[18,92,160,166],"facilitate":[19],"exchange":[21],"of":[22,24,27,35,44,54,68,70,72,75,144,172],"information,":[23],"data":[25],"and":[26,66,74,90,107,119,155,178],"models.":[28],"Hindering":[29],"these":[30],"initiatives":[31],"is":[32,83,112,164],"a":[33,36,51,55,61,125,168],"lack":[34],"comprehensive":[37],"ontology":[38,82,98,111],"that":[39,136],"covers":[40],"essential":[42],"concepts":[43],"domain.":[47,80,187],"RESULTS:":[48],"We":[49],"propose":[50],"first":[52],"version":[53],"newly":[56],"constructed":[57,97],"ontology,":[58],"HuPSON,":[59],"basis":[62],"for":[63,127,139],"shared":[64],"semantics":[65],"interoperability":[67,143],"simulations,":[69],"models,":[71],"algorithms":[73],"other":[76],"resources":[77],"in":[78,148,175],"this":[79],"The":[81],"based":[84],"Basic":[87],"Formal":[88],"Ontology,":[89],"adheres":[91],"MIREOT":[94],"principles;":[95],"has":[99],"been":[100],"evaluated":[101],"via":[102],"structural":[103],"features,":[104],"competency":[105],"questions":[106],"use":[108],"case":[109],"scenarios.The":[110],"freely":[113],"available":[114],"at:":[115],"http://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads.html":[116],"(owl":[117],"files)":[118],"http://bishop.scai.fraunhofer.de/scaiview/":[120],"(browser).":[121],"CONCLUSIONS:":[122],"HuPSON":[123],"provides":[124],"framework":[126],"a)":[128],"annotating":[129],"experiments,":[131],"b)":[132],"retrieving":[133],"relevant":[134],"information":[135],"required":[138],"modelling,":[140],"c)":[141],"enabling":[142],"algorithmic":[145],"approaches":[146,159],"used":[147],"simulation,":[150],"d)":[151],"comparing":[152],"results":[154],"e)":[156],"linking":[157],"knowledge-based":[158],"simulation-based":[161],"approaches.":[162],"It":[163],"meant":[165],"foster":[167],"more":[169],"rapid":[170],"uptake":[171],"semantic":[173],"technologies":[174],"modelling":[177],"domain,":[180],"with":[181],"particular":[182],"focus":[183],"VPH":[186]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
