{"id":"https://openalex.org/W2102175381","doi":"https://doi.org/10.1186/2041-1480-4-23","title":"Developing a semantically rich ontology for the biobank-administration domain","display_name":"Developing a semantically rich ontology for the biobank-administration domain","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2102175381","doi":"https://doi.org/10.1186/2041-1480-4-23","mag":"2102175381","pmid":"https://pubmed.ncbi.nlm.nih.gov/24103726"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-4-23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-23","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-23","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-23","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047229883","display_name":"Mathias Brochhausen","orcid":"https://orcid.org/0000-0003-1834-3856"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mathias Brochhausen","raw_affiliation_strings":["Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA. mbrochhausen@uams.edu","Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA. mbrochhausen@uams.edu","institution_ids":[]},{"raw_affiliation_string":"Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA#TAB#","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110460636","display_name":"Martin N. Fransson","orcid":null},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Martin N Fransson","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015227569","display_name":"Nitin V Kanaskar","orcid":null},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nitin V Kanaskar","raw_affiliation_strings":["Department of IT Research, University of Arkansas for Medical Sciences, Little Rock, AR, USA","Department of IT Research, University of Arkansas for Medical Sciences, Little Rock, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of IT Research, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"Department of IT Research, University of Arkansas for Medical Sciences, Little Rock, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037999437","display_name":"Mikael Eriksson","orcid":"https://orcid.org/0000-0001-8135-4270"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Mikael Eriksson","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101784527","display_name":"Roxana Merino-Martinez","orcid":"https://orcid.org/0000-0002-8939-0003"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Roxana Merino-Martinez","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077421127","display_name":"Roger A. Hall","orcid":null},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roger A Hall","raw_affiliation_strings":["Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042137382","display_name":"Loreana Norlin","orcid":null},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Loreana Norlin","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067329774","display_name":"Sanela Kjellqvist","orcid":null},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Sanela Kjellqvist","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075509848","display_name":"Maria Hortlund","orcid":"https://orcid.org/0000-0002-2627-4451"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Maria Hortlund","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023480695","display_name":"\u00dcmit Topalo\u011dlu","orcid":"https://orcid.org/0000-0002-3241-8773"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Umit Topaloglu","raw_affiliation_strings":["Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076610873","display_name":"William R. Hogan","orcid":"https://orcid.org/0000-0002-9881-1017"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William R Hogan","raw_affiliation_strings":["Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]},{"raw_affiliation_string":"Division of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110408359","display_name":"Jan\u2010Eric Litton","orcid":"https://orcid.org/0000-0002-1109-4853"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Jan-Eric Litton","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"#N#        Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5047229883"],"corresponding_institution_ids":["https://openalex.org/I79620101"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":1.9445,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.86130436,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"4","issue":"1","first_page":"23","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8149999976158142,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8149999976158142,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.07689999788999557,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.02669999934732914,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biobank","display_name":"Biobank","score":0.9470028877258301},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7778805494308472},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7154144644737244},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.558679461479187},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5317398905754089},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5166957378387451},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.512502908706665},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.4848000109195709},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.48267415165901184},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.4814988374710083},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4684738218784332},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.4298650026321411},{"id":"https://openalex.org/keywords/semantic-interoperability","display_name":"Semantic interoperability","score":0.42316025495529175},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38774240016937256},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.22236225008964539},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1668398380279541}],"concepts":[{"id":"https://openalex.org/C116567970","wikidata":"https://www.wikidata.org/wiki/Q864217","display_name":"Biobank","level":2,"score":0.9470028877258301},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7778805494308472},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7154144644737244},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.558679461479187},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5317398905754089},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5166957378387451},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.512502908706665},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.4848000109195709},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.48267415165901184},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.4814988374710083},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4684738218784332},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.4298650026321411},{"id":"https://openalex.org/C192800085","wikidata":"https://www.wikidata.org/wiki/Q5258530","display_name":"Semantic interoperability","level":3,"score":0.42316025495529175},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38774240016937256},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.22236225008964539},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1668398380279541},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/2041-1480-4-23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-23","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-23","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:24103726","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24103726","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:europepmc.org:2999197","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC4021870","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4021870","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4021870","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-4-23","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-23","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-23","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.550000011920929}],"awards":[{"id":"https://openalex.org/G4780805142","display_name":null,"funder_award_id":"UL1TR000039","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5070482119","display_name":null,"funder_award_id":"UL1TR000039","funder_id":"https://openalex.org/F4320310362","funder_display_name":"Arkansas Biosciences Institute"},{"id":"https://openalex.org/G8561788475","display_name":null,"funder_award_id":"UL1TR000039","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G8728972353","display_name":"Biobanking and Biomolecular Resources Research Infrastructure","funder_award_id":"212111","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320310362","display_name":"Arkansas Biosciences Institute","ror":"https://ror.org/00xcryt71"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2102175381.pdf","grobid_xml":"https://content.openalex.org/works/W2102175381.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W178305221","https://openalex.org/W1681831155","https://openalex.org/W1991007515","https://openalex.org/W2045659058","https://openalex.org/W2050402574","https://openalex.org/W2054119085","https://openalex.org/W2063700330","https://openalex.org/W2077701181","https://openalex.org/W2106779926","https://openalex.org/W2107931965","https://openalex.org/W2112846847","https://openalex.org/W2113142309","https://openalex.org/W2113737470","https://openalex.org/W2115523386","https://openalex.org/W2130698371","https://openalex.org/W2141394201","https://openalex.org/W2148095091","https://openalex.org/W2149378423","https://openalex.org/W2168218485","https://openalex.org/W2178026535","https://openalex.org/W2181836429","https://openalex.org/W2337792615","https://openalex.org/W2395648879","https://openalex.org/W2408566866","https://openalex.org/W2408693789","https://openalex.org/W2492676408"],"related_works":["https://openalex.org/W72173000","https://openalex.org/W4298842574","https://openalex.org/W1985696255","https://openalex.org/W1506177826","https://openalex.org/W26549824","https://openalex.org/W991275336","https://openalex.org/W2676475498","https://openalex.org/W2021890938","https://openalex.org/W2726617685","https://openalex.org/W2075856122"],"abstract_inverted_index":{"BACKGROUND:":[0],"Biobanks":[1],"are":[2,111],"a":[3,35,64,137,180,264,276,306,349,387,395],"critical":[4],"resource":[5],"for":[6,80,174,391],"translational":[7],"science.":[8],"Recently,":[9],"semantic":[10,152],"web":[11],"technologies":[12],"such":[13,54,255],"as":[14,55,256],"ontologies":[15,242,251],"have":[16],"been":[17],"found":[18,333],"useful":[19],"in":[20,63,126,147,226,245,252,318,348,355,394,398],"retrieving":[21],"research":[22,28],"data":[23,38,46,96,141,296,314,388],"from":[24,191,208,283,308,379],"biobanks.":[25,44,83],"However,":[26],"recent":[27],"has":[29],"also":[30],"shown":[31],"that":[32,121,188,287,334,352],"there":[33],"is":[34,57,67,76,116,353],"lack":[36],"of":[37,43,60,71,82,109,139,151,155,182,218,235,249,259,267,278,305,329,405],"about":[39,103],"the":[40,58,68,72,77,90,104,123,149,156,171,192,233,236,257,273,284,309,319,343,374,380],"administrative":[41,95,124],"aspects":[42],"These":[45],"would":[47],"be":[48],"helpful":[49],"to":[50,92,117,203,232,293,311,341,373,386],"answer":[51,204],"research-relevant":[52],"questions":[53,187,207,286,376],"what":[56,66,75],"scope":[59],"specimens":[61,108],"collected":[62],"biobank,":[65],"curation":[69],"status":[70],"specimens,":[73],"and":[74,128,159,229,269,275,366],"contact":[78,98],"information":[79],"curators":[81],"Our":[84,360],"use":[85,195,210,345,382],"cases":[86,346],"include":[87],"giving":[88],"researchers":[89],"ability":[91],"retrieve":[93,294],"key":[94],"(e.g.":[97],"information,":[99],"contact's":[100],"affiliation,":[101],"etc.)":[102],"biobanks":[105,268],"where":[106],"specific":[107],"interest":[110],"stored.":[112],"Thus,":[113],"our":[114,133,175,183,406],"goal":[115],"provide":[118],"an":[119,215,327],"ontology":[120,134,184,201,217,274,310,328,351,361],"represents":[122],"entities":[125],"biobanking":[127,350],"their":[129,270],"relations.":[130],"We":[131,177,213,332],"base":[132],"development":[135,202,304,337],"on":[136,168,179,338],"set":[138,277],"53":[140],"attributes":[142],"called":[143,221],"MIABIS,":[144],"which":[145],"were":[146,291],"part":[148],"result":[150],"integration":[153],"efforts":[154],"European":[157],"Biobanking":[158],"Biomolecular":[160],"Resources":[161],"Research":[162],"Infrastructure":[163],"(BBMRI).":[164],"The":[165],"previous":[166],"work":[167,198],"MIABIS":[169,223],"provided":[170],"domain":[172],"analysis":[173],"ontology.":[176,407],"report":[178],"test":[181,295],"against":[185],"competency":[186,206,285,375],"we":[189,288,290,302,324,377],"derived":[190,282,378],"initial":[193],"BBMRI":[194,344,381],"cases.":[196,211,383],"Future":[197],"includes":[199],"additional":[200,205],"these":[209],"RESULTS:":[212],"created":[214,325],"open-source":[216],"biobank":[219,313,330],"administration":[220],"Ontologized":[222],"(OMIABIS)":[224],"coded":[225],"OWL":[227],"2.0":[228],"developed":[230],"according":[231,372],"principles":[234],"OBO":[237],"Foundry.":[238],"It":[239],"re-uses":[240],"pre-existing":[241,312,339],"when":[243,370],"possible":[244],"cooperation":[246],"with":[247,297],"developers":[248],"other":[250,357],"related":[253],"domains,":[254],"Ontology":[258],"Biomedical":[260],"Investigation.":[261],"OMIABIS":[262,385],"provides":[263],"formalized":[265],"representation":[266],"administration.":[271,331],"Using":[272],"Description":[279],"Logic":[280],"queries":[281],"identified,":[289],"able":[292],"perfect":[298],"accuracy.":[299],"In":[300,322],"addition,":[301],"began":[303],"mapping":[307],"structures":[315],"commonly":[316],"used":[317,390],"U.S.":[320],"CONCLUSIONS:":[321],"conclusion,":[323],"OMIABIS,":[326],"basing":[335],"its":[336],"resources":[340],"meet":[342],"resulted":[347],"re-useable":[354],"environments":[356],"than":[358],"BBMRI.":[359],"retrieved":[362],"all":[363],"true":[364],"positives":[365,369],"no":[367],"false":[368],"queried":[371],"Mapping":[384],"structure":[389],"biospecimen":[392],"collections":[393],"medical":[396],"center":[397],"Little":[399],"Rock,":[400],"AR":[401],"showed":[402],"adequate":[403],"coverage":[404]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
