{"id":"https://openalex.org/W2068373991","doi":"https://doi.org/10.1186/2041-1480-4-21","title":"Enrichment analysis applied to disease prognosis","display_name":"Enrichment analysis applied to disease prognosis","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2068373991","doi":"https://doi.org/10.1186/2041-1480-4-21","mag":"2068373991","pmid":"https://pubmed.ncbi.nlm.nih.gov/24103636"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-4-21","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-21","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-21","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-21","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049376787","display_name":"C\u00e1tia Maria dos Santos Machado","orcid":"https://orcid.org/0000-0003-4055-6014"},"institutions":[{"id":"https://openalex.org/I4210125590","display_name":"Institute for Systems Engineering and Computers","ror":"https://ror.org/033wn8m60","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125590"]},{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]},{"id":"https://openalex.org/I4387152517","display_name":"Instituto Superior T\u00e9cnico","ror":"https://ror.org/03db2by73","country_code":null,"type":"education","lineage":["https://openalex.org/I141596103","https://openalex.org/I4387152517"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Catia M Machado","raw_affiliation_strings":["LaSIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal. cmachado@xldb.di.fc.ul.pt","Instituto de Engenharia de Sistemas e Computadores/Instituto Superior T\u00e9cnico, Lisboa, Portugal","LaSIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"LaSIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal. cmachado@xldb.di.fc.ul.pt","institution_ids":[]},{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores/Instituto Superior T\u00e9cnico, Lisboa, Portugal","institution_ids":["https://openalex.org/I4210125590","https://openalex.org/I4387152517"]},{"raw_affiliation_string":"LaSIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083766796","display_name":"Ana T. Freitas","orcid":"https://orcid.org/0000-0002-2997-5990"},"institutions":[{"id":"https://openalex.org/I4387152517","display_name":"Instituto Superior T\u00e9cnico","ror":"https://ror.org/03db2by73","country_code":null,"type":"education","lineage":["https://openalex.org/I141596103","https://openalex.org/I4387152517"]},{"id":"https://openalex.org/I4210125590","display_name":"Institute for Systems Engineering and Computers","ror":"https://ror.org/033wn8m60","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210125590"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Ana T Freitas","raw_affiliation_strings":["Instituto de Engenharia de Sistemas e Computadores/Instituto Superior T\u00e9cnico, Lisboa, Portugal"],"affiliations":[{"raw_affiliation_string":"Instituto de Engenharia de Sistemas e Computadores/Instituto Superior T\u00e9cnico, Lisboa, Portugal","institution_ids":["https://openalex.org/I4210125590","https://openalex.org/I4387152517"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014333753","display_name":"Francisco M. Couto","orcid":"https://orcid.org/0000-0003-0627-1496"},"institutions":[{"id":"https://openalex.org/I141596103","display_name":"University of Lisbon","ror":"https://ror.org/01c27hj86","country_code":"PT","type":"education","lineage":["https://openalex.org/I141596103"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Francisco M Couto","raw_affiliation_strings":["LaSIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal","LaSIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal#TAB#"],"affiliations":[{"raw_affiliation_string":"LaSIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal","institution_ids":["https://openalex.org/I141596103"]},{"raw_affiliation_string":"LaSIGE, Departamento de Inform\u00e1tica, Faculdade de Ci\u00eancias, Universidade de Lisboa, Lisboa, Portugal#TAB#","institution_ids":["https://openalex.org/I141596103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5049376787"],"corresponding_institution_ids":["https://openalex.org/I141596103","https://openalex.org/I4210125590","https://openalex.org/I4387152517"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.4046,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.68973087,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"4","issue":"1","first_page":"21","last_page":"21"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10882","display_name":"Cardiomyopathy and Myosin Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10882","display_name":"Cardiomyopathy and Myosin Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9692999720573425,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.968500018119812,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.7116855382919312},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4919126033782959},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3836047947406769},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.37221258878707886},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3379495143890381},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19312894344329834},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.17320474982261658}],"concepts":[{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.7116855382919312},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4919126033782959},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3836047947406769},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37221258878707886},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3379495143890381},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19312894344329834},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.17320474982261658}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/2041-1480-4-21","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-21","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-21","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:24103636","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24103636","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:europepmc.org:3096148","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4126066","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-4-21","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-21","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-21","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5299999713897705,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G3237340491","display_name":null,"funder_award_id":"PEst-OE/EEI/LA0021/2011","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3284537356","display_name":null,"funder_award_id":"SFRH/B","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5818630289","display_name":null,"funder_award_id":"SFRH/BD/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6299983296","display_name":null,"funder_award_id":"PTDC/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G724804869","display_name":null,"funder_award_id":"SFRH/","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2068373991.pdf","grobid_xml":"https://content.openalex.org/works/W2068373991.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W57993918","https://openalex.org/W93691788","https://openalex.org/W205863834","https://openalex.org/W618046730","https://openalex.org/W1501197722","https://openalex.org/W1579874153","https://openalex.org/W1971259806","https://openalex.org/W1986104055","https://openalex.org/W1998902445","https://openalex.org/W1999336249","https://openalex.org/W2036340138","https://openalex.org/W2060987350","https://openalex.org/W2084168100","https://openalex.org/W2087779040","https://openalex.org/W2096939566","https://openalex.org/W2103017472","https://openalex.org/W2106252902","https://openalex.org/W2106350001","https://openalex.org/W2116211027","https://openalex.org/W2123171788","https://openalex.org/W2127563440","https://openalex.org/W2130410032","https://openalex.org/W2130962401","https://openalex.org/W2133465414","https://openalex.org/W2138075827","https://openalex.org/W2167730267","https://openalex.org/W2625700274","https://openalex.org/W2911964244"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W1967563157","https://openalex.org/W1143447605","https://openalex.org/W2111650087","https://openalex.org/W1995085194"],"abstract_inverted_index":{":":[0],"Enrichment":[1],"analysis":[2,36,57,147,298,317],"is":[3,13,60,128,310],"well":[4],"established":[5],"in":[6,27,41,46,106,112,187,275,299,321],"the":[7,32,58,107,110,123,139,142,184,227,230,239,260,266,270,292,296,300,311,315],"field":[8],"of":[9,24,34,48,70,85,109,141,144,157,199,223,238,246,262,295,307,329],"transcriptomics,":[10],"where":[11],"it":[12],"used":[14,80,97,129],"to":[15,61,81,98,114,137,148,235,286,313,323,333],"identify":[16,62],"relevant":[17],"biological":[18,65],"features":[19,66,219],"that":[20,67,77,163,173,202],"characterize":[21,68],"a":[22,38,42,51,73,118,131,134,166,197,204,212,221],"set":[23],"genes":[25,247],"obtained":[26,179,264],"an":[28,145,191,236],"experiment.This":[29],"article":[30],"proposes":[31],"application":[33,143],"enrichment":[35,146,189,192,214,241,297,316],"as":[37,130,133,259],"first":[39,135],"step":[40],"disease":[43,124,149],"prognosis":[44,301,337],"methodology,":[45],"particular":[47],"diseases":[49],"with":[50,72,88,180,229,318],"strong":[52],"genetic":[53,181,324],"component.":[54],"With":[55],"this":[56,121,153],"objective":[59],"clinical":[63,319],"and":[64,76,102,171,183,211,225],"groups":[69,84,156],"patients":[71,86,111,158,162,172,200,224,228],"common":[74],"disease,":[75],"can":[78,94,303],"be":[79,96,287,304,334],"distinguish":[82],"between":[83,220],"associated":[87],"disease-related":[89,205],"events.":[90],"Data":[91],"mining":[92],"methodologies":[93],"then":[95],"exploit":[99],"those":[100],"features,":[101],"assist":[103],"medical":[104],"doctors":[105],"evaluation":[108],"respect":[113],"their":[115,209,280],"predisposition":[116],"for":[117,252,336],"specific":[119],"event.In":[120],"work":[122],"hypertrophic":[125],"cardiomyopathy":[126],"(HCM)":[127],"case-study,":[132],"test":[136,314],"assess":[138],"feasibility":[140],"prognosis.":[150],"To":[151],"perform":[152],"assessment,":[154],"two":[155,188],"have":[159,164,174],"been":[160],"considered:":[161],"suffered":[165,203],"sudden":[167],"cardiac":[168],"death":[169],"episode":[170],"not.The":[175],"results":[176,256],"presented":[177],"were":[178],"data":[182,330],"Gene":[185],"Ontology,":[186],"analyses:":[190],"profiling":[193],"aiming":[194,215],"at":[195,216],"characterizing":[196],"group":[198],"(e.g.":[201],"event)":[206],"based":[207],"on":[208],"mutations;":[210],"differential":[213],"identifying":[217],"differentiating":[218],"sub-group":[222],"all":[226],"disease.":[231],"These":[232],"analyses":[233],"correspond":[234],"adaptation":[237],"standard":[240],"analysis,":[242],"since":[243,326],"multiple":[244],"sets":[245,261],"are":[248,257,331],"being":[249],"considered,":[250],"one":[251],"each":[253],"patient.The":[254],"preliminary":[255],"promising,":[258],"terms":[263],"reflect":[265],"current":[267],"knowledge":[268],"about":[269],"gene":[271],"functions":[272],"commonly":[273],"altered":[274],"HCM":[276],"patients,":[277],"thus":[278],"allowing":[279],"characterization.":[281],"Nevertheless,":[282],"some":[283],"factors":[284,309],"need":[285,312],"taken":[288],"into":[289],"consideration":[290],"before":[291],"full":[293],"potential":[294],"methodology":[302],"evaluated.":[305],"One":[306],"such":[308],"data,":[320,325],"addition":[322],"both":[327],"types":[328],"expected":[332],"necessary":[335],"purposes.":[338]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
