{"id":"https://openalex.org/W2061062750","doi":"https://doi.org/10.1186/2041-1480-4-2","title":"OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows","display_name":"OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2061062750","doi":"https://doi.org/10.1186/2041-1480-4-2","mag":"2061062750","pmid":"https://pubmed.ncbi.nlm.nih.gov/23286517"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-4-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-2","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-2","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090216571","display_name":"Mikel Ega\u00f1a Aranguren","orcid":"https://orcid.org/0000-0001-8081-1839"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Mikel Ega\u00f1a Aranguren","raw_affiliation_strings":["Ontology Engineering Group, School of Computer Science, Technical University of Madrid (UPM), Boadilla del Monte, 28660, Spain. mikel.egana.aranguren@upm.es","Ontology Engineering Group, School of Computer Science, Technical University of Madrid (UPM), Boadilla del Monte, 28660, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ontology Engineering Group, School of Computer Science, Technical University of Madrid (UPM), Boadilla del Monte, 28660, Spain. mikel.egana.aranguren@upm.es","institution_ids":[]},{"raw_affiliation_string":"Ontology Engineering Group, School of Computer Science, Technical University of Madrid (UPM), Boadilla del Monte, 28660, Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086790858","display_name":"Jesualdo Tom\u00e1s Fern\u00e1ndez\u2010Breis","orcid":"https://orcid.org/0000-0002-7558-2880"},"institutions":[{"id":"https://openalex.org/I80180929","display_name":"Universidad de Murcia","ror":"https://ror.org/03p3aeb86","country_code":"ES","type":"education","lineage":["https://openalex.org/I80180929"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jesualdo Tom\u00e1s Fern\u00e1ndez-Breis","raw_affiliation_strings":["School of Computer Science, University of Murcia (UM), Murcia, 30100, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Murcia (UM), Murcia, 30100, Spain","institution_ids":["https://openalex.org/I80180929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Mungall","raw_affiliation_strings":["Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, US"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, US","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059590876","display_name":"Erick Antezana","orcid":"https://orcid.org/0000-0002-2497-8236"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Erick Antezana","raw_affiliation_strings":["Department of Biology, Norwegian University of Science and Technology (NTNU), H\u00f8gskoleringen 5, Trondheim, N-7491, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Norwegian University of Science and Technology (NTNU), H\u00f8gskoleringen 5, Trondheim, N-7491, Norway","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013323586","display_name":"Alejandro Rodr\u00edguez\u2010Gonz\u00e1lez","orcid":"https://orcid.org/0000-0001-8801-4762"},"institutions":[{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I4210151575","display_name":"GPTech (Spain)","ror":"https://ror.org/03v94bt80","country_code":"ES","type":"company","lineage":["https://openalex.org/I4210151575"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alejandro Rodr\u00edguez Gonz\u00e1lez","raw_affiliation_strings":["Biological Informatics Group, Centre for Plant Biotechnology and Genomics (CBGP), Technical University of Madrid (UPM), Pozuelo de Alarc\u00f3n, 28223, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Informatics Group, Centre for Plant Biotechnology and Genomics (CBGP), Technical University of Madrid (UPM), Pozuelo de Alarc\u00f3n, 28223, Spain","institution_ids":["https://openalex.org/I4210162265","https://openalex.org/I88060688","https://openalex.org/I4210151575"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067974158","display_name":"Mark D. Wilkinson","orcid":"https://orcid.org/0000-0001-6960-357X"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]},{"id":"https://openalex.org/I4210162265","display_name":"Centre for Plant Biotechnology and Genomics","ror":"https://ror.org/04mfzb702","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210162265"]},{"id":"https://openalex.org/I4210151575","display_name":"GPTech (Spain)","ror":"https://ror.org/03v94bt80","country_code":"ES","type":"company","lineage":["https://openalex.org/I4210151575"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mark D Wilkinson","raw_affiliation_strings":["Biological Informatics Group, Centre for Plant Biotechnology and Genomics (CBGP), Technical University of Madrid (UPM), Pozuelo de Alarc\u00f3n, 28223, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Informatics Group, Centre for Plant Biotechnology and Genomics (CBGP), Technical University of Madrid (UPM), Pozuelo de Alarc\u00f3n, 28223, Spain","institution_ids":["https://openalex.org/I4210162265","https://openalex.org/I88060688","https://openalex.org/I4210151575"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5090216571"],"corresponding_institution_ids":["https://openalex.org/I88060688"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.7479,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.71661106,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"4","issue":"1","first_page":"2","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8213000297546387,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8213000297546387,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.15209999680519104,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.00419999985024333,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7940715551376343},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6680566072463989},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5998322367668152},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5882531404495239},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.5297879576683044},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.4470512270927429},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42990636825561523},{"id":"https://openalex.org/keywords/galaxy","display_name":"Galaxy","score":0.4291132688522339},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.38566112518310547},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.22263410687446594},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.12510231137275696},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09082275629043579},{"id":"https://openalex.org/keywords/astronomy","display_name":"Astronomy","score":0.07450026273727417}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7940715551376343},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6680566072463989},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5998322367668152},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5882531404495239},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.5297879576683044},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.4470512270927429},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42990636825561523},{"id":"https://openalex.org/C98444146","wikidata":"https://www.wikidata.org/wiki/Q318","display_name":"Galaxy","level":2,"score":0.4291132688522339},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.38566112518310547},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.22263410687446594},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12510231137275696},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09082275629043579},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.07450026273727417},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1186/2041-1480-4-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-2","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-2","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:23286517","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23286517","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:dnet:archivodigit::64e23f5dfedebfade3274f20d608aefe","is_oa":false,"landing_page_url":"http://oa.upm.es/15232/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, 2013-01-04","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:oa.upm.es:15232","is_oa":true,"landing_page_url":"https://oa.upm.es/15232/","pdf_url":"https://oa.upm.es/15232/1/OPPL-Galaxy.pdf","source":{"id":"https://openalex.org/S4306402421","display_name":"Archivo Digital UPM (Universidad Polit\u00e9cnica de Madrid)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I88060688","host_organization_name":"Universidad Polit\u00e9cnica de Madrid","host_organization_lineage":["https://openalex.org/I88060688"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, 2013-01-04","raw_type":"info:eu-repo/semantics/acceptedVersion"},{"id":"pmh:oai:addi.ehu.eus:10810/74958","is_oa":true,"landing_page_url":"http://hdl.handle.net/10810/74958","pdf_url":null,"source":{"id":"https://openalex.org/S4306401964","display_name":"Communities in ADDI (University of the Basque Country)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169108374","host_organization_name":"University of the Basque Country","host_organization_lineage":["https://openalex.org/I169108374"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2643939","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3643862","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:osti.gov:1626674","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1626674","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1186/2041-1480-4-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-4-2","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-4-2","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.46000000834465027}],"awards":[{"id":"https://openalex.org/G4766224013","display_name":null,"funder_award_id":"TIN2010-21388-C02-02","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2061062750.pdf","grobid_xml":"https://content.openalex.org/works/W2061062750.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W128665181","https://openalex.org/W132151164","https://openalex.org/W1498424588","https://openalex.org/W1529246548","https://openalex.org/W1564494788","https://openalex.org/W1566720158","https://openalex.org/W1568349464","https://openalex.org/W1838034317","https://openalex.org/W1972077901","https://openalex.org/W1993010157","https://openalex.org/W2004884668","https://openalex.org/W2007622742","https://openalex.org/W2016602738","https://openalex.org/W2061017626","https://openalex.org/W2062296737","https://openalex.org/W2095869976","https://openalex.org/W2096704019","https://openalex.org/W2103017472","https://openalex.org/W2103355425","https://openalex.org/W2107643858","https://openalex.org/W2108491719","https://openalex.org/W2111306015","https://openalex.org/W2112015698","https://openalex.org/W2113142309","https://openalex.org/W2124758832","https://openalex.org/W2136482257","https://openalex.org/W2136539307","https://openalex.org/W2137428218","https://openalex.org/W2140157849","https://openalex.org/W2150245022","https://openalex.org/W2155842211","https://openalex.org/W2166574880","https://openalex.org/W2395063670","https://openalex.org/W2396067683","https://openalex.org/W2404413498","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W72173000","https://openalex.org/W1506177826","https://openalex.org/W26549824","https://openalex.org/W991275336","https://openalex.org/W2102229151","https://openalex.org/W2021890938","https://openalex.org/W2127299687","https://openalex.org/W2138664789","https://openalex.org/W4298842574","https://openalex.org/W1618241471"],"abstract_inverted_index":{"BACKGROUND:":[0],"Biomedical":[1],"ontologies":[2,18],"are":[3,122],"key":[4],"elements":[5],"for":[6,30,45,69,87,130],"building":[7,16],"up":[8],"the":[9,47,57,105,111,145,156,177],"Life":[10],"Sciences":[11],"Semantic":[12],"Web.":[13],"Reusing":[14],"and":[15,21,65,107,133,168],"biomedical":[17,72,135,171],"requires":[19],"flexible":[20],"versatile":[22],"tools":[23,106,143],"to":[24,49,126],"manipulate":[25],"them":[26],"efficiently,":[27],"in":[28,52,115,124,149],"particular":[29],"enriching":[31,70],"their":[32],"axiomatic":[33],"content.":[34],"The":[35,92],"Ontology":[36],"Pre":[37],"Processor":[38],"Language":[39],"(OPPL)":[40],"is":[41,153],"an":[42,53,116],"OWL-based":[43],"language":[44],"automating":[46],"changes":[48],"be":[50,102],"performed":[51],"ontology.":[54],"OPPL":[55,89,96],"augments":[56],"ontologists'":[58],"toolbox":[59],"by":[60,77,95],"providing":[61],"a":[62,71,78,85,150,163],"more":[63,154],"efficient,":[64],"less":[66],"error-prone,":[67],"mechanism":[68],"ontology":[73,99],"than":[74,155],"that":[75,152],"obtained":[76],"manual":[79],"treatment.":[80],"RESULTS:":[81],"We":[82],"present":[83],"OPPL-Galaxy,":[84],"wrapper":[86],"using":[88],"within":[90,110],"Galaxy.":[91],"functionality":[93],"delivered":[94],"(i.e.":[97],"automated":[98,174],"manipulation)":[100],"can":[101],"combined":[103],"with":[104,140],"workflows":[108],"devised":[109],"Galaxy":[112,146],"framework,":[113],"resulting":[114],"enhancement":[117],"of":[118,144,158,166,170],"OPPL.":[119],"Use":[120],"cases":[121],"provided":[123],"order":[125],"demonstrate":[127],"OPPL-Galaxy's":[128],"capability":[129],"enriching,":[131],"modifying":[132],"querying":[134],"ontologies.":[136],"CONCLUSIONS:":[137],"Coupling":[138],"OPPL-Galaxy":[139,161],"other":[141],"bioinformatics":[142],"framework":[147],"results":[148],"system":[151],"sum":[157],"its":[159],"parts.":[160],"opens":[162],"new":[164],"dimension":[165],"analyses":[167],"exploitation":[169],"ontologies,":[172],"including":[173],"reasoning,":[175],"paving":[176],"way":[178],"towards":[179],"advanced":[180],"biological":[181],"data":[182],"analyses.":[183]},"counts_by_year":[{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2026-05-08T15:41:06.802602","created_date":"2016-06-24T00:00:00"}
